EMD-61358

Single-particle
3.34 Å
EMD-61358
3D View Gallery
Deposition: 28/08/2024
Map released: 03/09/2025
Last modified: 24/09/2025
Overview 3D View Sample Experiment Validation Additional data Links
Overview 3D View Sample Experiment Validation Additional data Links

EMD-61358

Archive Files (Depositor)

Primary 3D volume (map.gz) Half-map 1 Half-map 2 (map.gz) Experimental metadata (xml) Experimental metadata (cif.gz)

Validation (wwPDB)

Map-only validation report (pdf.gz) Map-9jc6 summary report (pdf.gz) Map-9jc6 FULL report (pdf.gz)

EMDB Annotations

EMICSS entry mapping (xml)

EMDB Files

VA raw map (map) VA resolution mask (mrc)

Human H2BW2 nucleosome

EMD-61358

Single-particle
3.34 Å
EMD-61358
3D View Gallery
Deposition: 28/08/2024
Map released: 03/09/2025
Last modified: 24/09/2025
Overview 3D View Sample Experiment Validation Additional data Links
Sample Organism: Homo sapiens, synthetic construct
Sample: Human H2BW2 nucleosome with 601 DNA sequence
Fitted models: 9jc6

Deposition Authors: Ding DB, Ishibashi T , Nguyen TT
H2B.W2, a spermatocyte-specific histone variant, disrupts nucleosome stability, and reduces chromatin compaction.
Nguyen ATT, Ding D , Bai X, Pang MYH , Deng M, Liu Y, Jin T, Xu Z, Zhang Y, Zhai Y , Yan Y, Ishibashi T
(2025) Nucleic Acids Res , 53
PUBMED: 40874595
DOI: doi:10.1093/nar/gkaf825
ISSN: 1362-4962
ASTM: NARHAD