EMD-4112

Single-particle
4.2 Å
EMD-4112
3D View Gallery
Deposition: 15/09/2016
Map released: 14/12/2016
Last modified: 15/05/2024
Overview 3D View Sample Experiment Validation Additional data Links
Overview 3D View Sample Experiment Validation Additional data Links

EMD-4112
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3D volume (map.gz) Experimental metadata (xml) Experimental Metadata (cif.gz)
Map-only Validation report (pdf.gz) Map-only Validation report (cif.gz) Map-only Validation report (xml.gz)
Map and PDB model 5lvc summary report (pdf.gz) Map and 5lvc FULL report (pdf.gz)
EMICSS annotations (xml)

Aichi virus 1: empty particle

EMD-4112

Single-particle
4.2 Å
EMD-4112
3D View Gallery
Deposition: 15/09/2016
Map released: 14/12/2016
Last modified: 15/05/2024
Overview 3D View Sample Experiment Validation Additional data Links
Method: Single-particle
Aggregation State: Particle
Specimen preparation [1]
Concentration: 3 mg/mL
Buffer
pH: 7.5
Vitrification
Cryogen name: ETHANE
Microscopy [1]
Microscope: FEI TITAN KRIOS
Illumination mode: FLOOD BEAM
Imaging mode: BRIGHT FIELD
Electron source: FIELD EMISSION GUN
Acceleration voltage: 300 kV
C2 aperture diameter: 100.0 µm
Nominal CS: 2.7 mm
Image Recording [1]
Detector model: FEI FALCON II (4k x 4k)
Average electron dose per image: 20.0 e/Å2
Image processing [1]
Final reconstruction
Resolution: 4.2 Å ( BY AUTHOR)
Resolution method: FSC 0.143 CUT-OFF
Number of images used: 11606
Startup model [1]
Type: PDB ENTRY
PDB model: 5AOO
⦨ Initial angle assignment
Type: PROJECTION MATCHING
⦩ Final angle assignment
Type: PROJECTION MATCHING
Map
Format: CCP4
Data type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Annotation details: Archie Virus 1: Empty particle
⬡ Geometry
X Y Z
Origin -162 -162 -162
Dimensions (px) 324 324 324
Dimensions (Å) 560.52 560.52 560.52
Voxel size (Å) 1.73 1.73 1.73
Contour list
Primary Level Source
True 0.055 AUTHOR