EMD-37121

Single-particle
3.2 Å
EMD-37121 Deposition: 08/08/2023
Map released: 12/03/2025
Last modified: 30/07/2025
Overview 3D View Sample Experiment Validation Additional data Links
Overview 3D View Sample Experiment Validation Additional data Links

EMD-37121

Archive Files (Depositor)

Primary 3D volume (map.gz) Half-map 1 Half-map 2 (map.gz) Experimental metadata (xml) Experimental metadata (cif.gz)

Validation (wwPDB)

Map-only validation report (pdf.gz) Map-8kd1 summary report (pdf.gz) Map-8kd1 FULL report (pdf.gz)

EMDB Annotations

EMICSS entry mapping (xml)

EMDB Files

VA raw map (map) VA resolution mask (mrc)

Structure of nucleosome complexed with one DEK molecule

EMD-37121

Single-particle
3.2 Å
EMD-37121 Deposition: 08/08/2023
Map released: 12/03/2025
Last modified: 30/07/2025
Overview 3D View Sample Experiment Validation Additional data Links
Sample Organism: Homo sapiens, synthetic construct
Sample: DEK monomer bound to the nucleosome
Fitted models: 8kd1

Deposition Authors: Kujirai T , Echigoya K , Takizawa Y , Kurumizaka H
Structural insights into how DEK nucleosome binding facilitates H3K27 trimethylation in chromatin.
Kujirai T , Echigoya K , Kishi Y , Saeki M, Ito T, Kato J, Negishi L , Kimura H , Masumoto H, Takizawa Y , Gotoh Y , Kurumizaka H
(2025) Nat Struct Mol Biol , 32 , 1183 - 1192
PUBMED: 39984731
DOI: doi:10.1038/s41594-025-01493-w
ISSN: 1545-9985