EMD-11042

Single-particle
4.5 Å
EMD-11042
3D View Gallery
Deposition: 16/05/2020
Map released: 08/07/2020
Last modified: 22/05/2024
Overview 3D View Sample Experiment Validation Additional data Links
Overview 3D View Sample Experiment Validation Additional data Links

EMD-11042
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3D volume (map.gz) Experimental metadata (xml) Experimental Metadata (cif.gz)
Map-only Validation report (pdf.gz) Map-only Validation report (cif.gz) Map-only Validation report (xml.gz)
Map and PDB model 6z2k summary report (pdf.gz) Map and 6z2k FULL report (pdf.gz)
EMICSS annotations (xml)

The structure of the tetrameric HDAC1/MIDEAS/DNTTIP1 MiDAC deacetylase complex

EMD-11042

Single-particle
4.5 Å
EMD-11042
3D View Gallery
Deposition: 16/05/2020
Map released: 08/07/2020
Last modified: 22/05/2024
Overview 3D View Sample Experiment Validation Additional data Links
Name: Tetrameric complex of the MiDAC deacetylase complex containing HDAC1, the ELM2-SANT domain of MIDEAS and the dimerisation domain of DNTTIP1
Complex [1]
Name: Tetrameric complex of the MiDAC deacetylase complex containing HDAC1, the ELM2-SANT domain of MIDEAS and the dimerisation domain of DNTTIP1
Natural source [1]
Organism: Homo sapiens
Molecular weight
Experimental Theoretical Method
- 357 kDa -
Complex Portal [1]
ID Name Overlap
CPX-2874 MiDAC histone deacetylase complex, HDAC1 variant 1.00
Protein [3]
LEVO
Name: Histone deacetylase 1
EC number: 3.5.1.98
Number of copies: 4
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Homo sapiens
Molecular weight
Experimental Theoretical Method
- 55 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Homo sapiens - - -
LEVO
Name: Deoxynucleotidyltransferase terminal-interacting protein 1
Number of copies: 4
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Homo sapiens
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Homo sapiens - - -
LEVO
Name: Mitotic deacetylase-associated SANT domain protein
Number of copies: 4
UniProtKB PDBe-KB AlphaFold DB
Domains
Natural source
Organism: Homo sapiens
Molecular weight
Experimental Theoretical Method
- 19 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Homo sapiens - - -
Ligand [3]
Name: ZINC ION
HET code: ZN
Number of copies: 4
ChEMBL ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 65 Da -
Name: POTASSIUM ION
HET code: K
Number of copies: 8
ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 39 Da -
Name: INOSITOL HEXAKISPHOSPHATE
HET code: IHP
Number of copies: 4
ChEMBL ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 660 Da -