CHEBI:52193 - NIR-820 dye

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ChEBI Name NIR-820 dye
ChEBI ID CHEBI:52193
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information
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Formula C40H47ClN2O10S2
Net Charge 0
Average Mass 815.39200
Monoisotopic Mass 814.23607
InChI InChI=1S/C40H47ClN2O10S2/c1-39(2)30-24-28(37(44)45)12-16-32(30)42(20-5-7-22-54(48,49)50)34(39)18-14-26-10-9-11-27(36(26)41)15-19-35-40(3,4)31-25-29(38(46)47)13-17-33(31)43(35)21-6-8-23-55(51,52)53/h12-19,24-25H,5-11,20-23H2,1-4H3,(H3-,44,45,46,47,48,49,50,51,52,53)
InChIKey HJEIDWZAADEXGG-UHFFFAOYSA-N
SMILES [H+].[H]C(=C([H])C1=[N+](CCCCS([O-])(=O)=O)c2ccc(cc2C1(C)C)C(O)=O)C1=C(Cl)C(CCC1)=C([H])C([H])=C1N(CCCCS([O-])(=O)=O)c2ccc(cc2C1(C)C)C(O)=O
Roles Classification
Application(s): fluorochrome
A fluorescent dye used to stain biological specimens.
dye

(via cyanine dye )
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ChEBI Ontology
Outgoing NIR-820 dye (CHEBI:52193) has role fluorochrome (CHEBI:51217)
NIR-820 dye (CHEBI:52193) is a cyanine dye (CHEBI:37960)
IUPAC Name
4-{5-carboxy-2-[2-(3-{2-[5-carboxy-3,3-dimethyl-1-(4-sulfobutyl)-1,3-dihydro-2H-indol-2-ylidene]ethylidene}-2-chlorocyclohex-1-en-1-yl)ethenyl]-3,3-dimethyl-3H-indolium-1-yl}butane-1-sulfonate
Synonym Source
NIR820 ChEBI
Last Modified
19 March 2009