CHEBI:84482 - 5'-GUUUGGCGACGUCCCACAUGAGCC-3' RNA fragment

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ChEBI Name 5'-GUUUGGCGACGUCCCACAUGAGCC-3' RNA fragment
ChEBI ID CHEBI:84482
Definition An RNA fragment comprised of seven guanosine, five uridine, eight cytidine and four adenosine residues connected by 3'→5' phosphodiester linkages in the sequence G-U-U-U-G-G-C-G-A-C-G-U-C-C-C-A-C-A-U-G-A-G-C-C.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information
Download Molfile XML SDF
Formula C227H285N89O170P24
Net Charge 0
Average Mass 7723.55640
Monoisotopic Mass 7720.00949
InChI InChI=1S/C227H285N89O170P24/c228-90-1-14-293(215(354)266-90)184-115(324)139(463-487(367,368)369)67(440-184)28-416-489(372,373)465-140-71(444-185(116(140)325)294-15-2-91(229)267-216(294)355)35-425-504(402,403)481-157-88(461-203(133(157)342)312-61-261-109-172(312)281-210(242)288-179(109)349)49-437-507(408,409)480-155-83(456-200(131(155)340)309-58-258-106-165(239)250-54-254-169(106)309)44-432-509(412,413)485-160-86(459-206(136(160)345)315-64-264-112-175(315)284-213(245)291-182(112)352)47-435-500(394,395)476-151-78(451-196(127(151)336)305-26-13-102(322)278-227(305)366)39-427-503(400,401)479-153-81(454-198(129(153)338)307-56-256-104-163(237)248-52-252-167(104)307)42-430-496(386,387)469-144-72(445-189(120(144)329)298-19-6-95(233)271-220(298)359)33-423-501(396,397)477-152-80(453-197(128(152)337)306-55-255-103-162(236)247-51-251-166(103)306)41-429-495(384,385)468-143-70(443-188(119(143)328)297-18-5-94(232)270-219(297)358)31-419-491(376,377)466-141-68(441-186(117(141)326)295-16-3-92(230)268-217(295)356)30-418-490(374,375)467-142-69(442-187(118(142)327)296-17-4-93(231)269-218(296)357)32-420-492(378,379)473-149-79(452-194(125(149)334)303-24-11-100(320)276-225(303)364)40-428-506(406,407)483-156-84(457-202(132(156)341)311-60-260-108-171(311)280-209(241)287-178(108)348)45-433-497(388,389)470-145-73(446-190(121(145)330)299-20-7-96(234)272-221(299)360)34-424-502(398,399)478-154-82(455-199(130(154)339)308-57-257-105-164(238)249-53-253-168(105)308)43-431-508(410,411)484-159-85(458-205(135(159)344)314-63-263-111-174(314)283-212(244)290-181(111)351)46-434-498(390,391)471-146-74(447-191(122(146)331)300-21-8-97(235)273-222(300)361)36-426-505(404,405)482-158-89(462-204(134(158)343)313-62-262-110-173(313)282-211(243)289-180(110)350)50-438-510(414,415)486-161-87(460-207(137(161)346)316-65-265-113-176(316)285-214(246)292-183(113)353)48-436-499(392,393)475-150-77(450-195(126(150)335)304-25-12-101(321)277-226(304)365)38-422-494(382,383)474-148-76(449-193(124(148)333)302-23-10-99(319)275-224(302)363)37-421-493(380,381)472-147-75(448-192(123(147)332)301-22-9-98(318)274-223(301)362)29-417-488(370,371)464-138-66(27-317)439-201(114(138)323)310-59-259-107-170(310)279-208(240)286-177(107)347/h1-26,51-89,114-161,184-207,317,323-346H,27-50H2,(H,370,371)(H,372,373)(H,374,375)(H,376,377)(H,378,379)(H,380,381)(H,382,383)(H,384,385)(H,386,387)(H,388,389)(H,390,391)(H,392,393)(H,394,395)(H,396,397)(H,398,399)(H,400,401)(H,402,403)(H,404,405)(H,406,407)(H,408,409)(H,410,411)(H,412,413)(H,414,415)(H2,228,266,354)(H2,229,267,355)(H2,230,268,356)(H2,231,269,357)(H2,232,270,358)(H2,233,271,359)(H2,234,272,360)(H2,235,273,361)(H2,236,247,251)(H2,237,248,252)(H2,238,249,253)(H2,239,250,254)(H,274,318,362)(H,275,319,363)(H,276,320,364)(H,277,321,365)(H,278,322,366)(H2,367,368,369)(H3,240,279,286,347)(H3,241,280,287,348)(H3,242,281,288,349)(H3,243,282,289,350)(H3,244,283,290,351)(H3,245,284,291,352)(H3,246,285,292,353)/t66-,67-,68-,69-,70-,71-,72-,73-,74-,75-,76-,77-,78-,79-,80-,81-,82-,83-,84-,85-,86-,87-,88-,89-,114-,115-,116-,117-,118-,119-,120-,121-,122-,123-,124-,125-,126-,127-,128-,129-,130-,131-,132-,133-,134-,135-,136-,137-,138-,139-,140-,141-,142-,143-,144-,145-,146-,147-,148-,149-,150-,151-,152-,153-,154-,155-,156-,157-,158-,159-,160-,161-,184-,185-,186-,187-,188-,189-,190-,191-,192-,193-,194-,195-,196-,197-,198-,199-,200-,201-,202-,203-,204-,205-,206-,207-/m1/s1
InChIKey YLANHXFPZFAXCW-LRTNIACYSA-N
SMILES Nc1ccn([C@@H]2O[C@H](COP(O)(=O)O[C@@H]3[C@@H](COP(O)(=O)O[C@@H]4[C@@H](COP(O)(=O)O[C@@H]5[C@@H](COP(O)(=O)O[C@@H]6[C@@H](COP(O)(=O)O[C@@H]7[C@@H](COP(O)(=O)O[C@@H]8[C@@H](COP(O)(=O)O[C@@H]9[C@@H](COP(O)(=O)O[C@@H]%10[C@@H](COP(O)(=O)O[C@@H]%11[C@@H](COP(O)(=O)O[C@@H]%12[C@@H](COP(O)(=O)O[C@@H]%13[C@@H](COP(O)(=O)O[C@@H]%14[C@@H](COP(O)(=O)O[C@@H]%15[C@@H](COP(O)(=O)O[C@@H]%16[C@@H](COP(O)(=O)O[C@@H]%17[C@@H](COP(O)(=O)O[C@@H]%18[C@@H](COP(O)(=O)O[C@@H]%19[C@@H](COP(O)(=O)O[C@@H]%20[C@@H](COP(O)(=O)O[C@@H]%21[C@@H](COP(O)(=O)O[C@@H]%22[C@@H](COP(O)(=O)O[C@@H]%23[C@@H](COP(O)(=O)O[C@@H]%24[C@@H](COP(O)(=O)O[C@@H]%25[C@@H](CO)O[C@H]([C@@H]%25O)n%25cnc%26c%25nc(N)[nH]c%26=O)O[C@H]([C@@H]%24O)n%24ccc(=O)[nH]c%24=O)O[C@H]([C@@H]%23O)n%23ccc(=O)[nH]c%23=O)O[C@H]([C@@H]%22O)n%22ccc(=O)[nH]c%22=O)O[C@H]([C@@H]%21O)n%21cnc%22c%21nc(N)[nH]c%22=O)O[C@H]([C@@H]%20O)n%20cnc%21c%20nc(N)[nH]c%21=O)O[C@H]([C@@H]%19O)n%19ccc(N)nc%19=O)O[C@H]([C@@H]%18O)n%18cnc%19c%18nc(N)[nH]c%19=O)O[C@H]([C@@H]%17O)n%17cnc%18c(N)ncnc%17%18)O[C@H]([C@@H]%16O)n%16ccc(N)nc%16=O)O[C@H]([C@@H]%15O)n%15cnc%16c%15nc(N)[nH]c%16=O)O[C@H]([C@@H]%14O)n%14ccc(=O)[nH]c%14=O)O[C@H]([C@@H]%13O)n%13ccc(N)nc%13=O)O[C@H]([C@@H]%12O)n%12ccc(N)nc%12=O)O[C@H]([C@@H]%11O)n%11ccc(N)nc%11=O)O[C@H]([C@@H]%10O)n%10cnc%11c(N)ncnc%10%11)O[C@H]([C@@H]9O)n9ccc(N)nc9=O)O[C@H]([C@@H]8O)n8cnc9c(N)ncnc89)O[C@H]([C@@H]7O)n7ccc(=O)[nH]c7=O)O[C@H]([C@@H]6O)n6cnc7c6nc(N)[nH]c7=O)O[C@H]([C@@H]5O)n5cnc6c(N)ncnc56)O[C@H]([C@@H]4O)n4cnc5c4nc(N)[nH]c5=O)O[C@H]([C@@H]3O)n3ccc(N)nc3=O)[C@@H](OP(O)(O)=O)[C@H]2O)c(=O)n1
Roles Classification
Biological Role(s): epitope
The biological role played by a material entity when bound by a receptor of the adaptive immune system. Specific site on an antigen to which an antibody binds.
View more via ChEBI Ontology
ChEBI Ontology
Outgoing 5'-GUUUGGCGACGUCCCACAUGAGCC-3' RNA fragment (CHEBI:84482) has role epitope (CHEBI:53000)
5'-GUUUGGCGACGUCCCACAUGAGCC-3' RNA fragment (CHEBI:84482) is a RNA fragment (CHEBI:82726)
IUPAC Name
G-U-U-U-G-G-C-G-A-C-G-U-C-C-C-A-C-A-U-G-A-G-C-C
Synonym Source
GpUpUpUpGpGpCpGpApCpGpUpCpCpCpApCpApUpGpApGpCpC ChEBI
Citation Waiting for Citations Type Source
12022352 PubMed citation Europe PMC
Last Modified
07 April 2015