CHEBI:84463 - 5'-CGUUCGCG-3' RNA fragment

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ChEBI Name 5'-CGUUCGCG-3' RNA fragment
ChEBI ID CHEBI:84463
Definition An RNA fragment comprised of three cytidine, three guanosine and two uridine residues connected by 3'→5' phosphodiester linkages in the sequence C-G-U-U-C-G-C-G.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information
Download Molfile XML SDF
Formula C75H95N28O56P7
Net Charge 0
Average Mass 2501.52710
Monoisotopic Mass 2500.36100
InChI InChI=1S/C75H95N28O56P7/c76-30-1-6-96(71(119)85-30)61-40(109)47(22(11-104)145-61)153-161(126,127)139-17-28-52(45(114)66(151-28)102-20-83-36-55(102)91-69(80)94-58(36)117)158-166(136,137)143-16-27-51(44(113)65(150-27)100-10-5-34(106)89-75(100)123)157-163(130,131)141-15-26-50(43(112)64(149-26)99-9-4-33(105)88-74(99)122)156-162(128,129)140-14-25-49(42(111)63(148-25)98-8-3-32(78)87-73(98)121)155-164(132,133)144-18-29-53(46(115)67(152-29)103-21-84-37-56(103)92-70(81)95-59(37)118)159-165(134,135)142-13-24-48(41(110)62(147-24)97-7-2-31(77)86-72(97)120)154-160(124,125)138-12-23-38(107)39(108)60(146-23)101-19-82-35-54(101)90-68(79)93-57(35)116/h1-10,19-29,38-53,60-67,104,107-115H,11-18H2,(H,124,125)(H,126,127)(H,128,129)(H,130,131)(H,132,133)(H,134,135)(H,136,137)(H2,76,85,119)(H2,77,86,120)(H2,78,87,121)(H,88,105,122)(H,89,106,123)(H3,79,90,93,116)(H3,80,91,94,117)(H3,81,92,95,118)/t22-,23-,24-,25-,26-,27-,28-,29-,38-,39-,40-,41-,42-,43-,44-,45-,46-,47-,48-,49-,50-,51-,52-,53-,60-,61-,62-,63-,64-,65-,66-,67-/m1/s1
InChIKey QKIUNHXCXDWHGU-JCUJSXMQSA-N
SMILES Nc1ccn([C@@H]2O[C@H](CO)[C@@H](OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n3cnc4c3nc(N)[nH]c4=O)n3ccc(N)nc3=O)n3cnc4c3nc(N)[nH]c4=O)n3ccc(N)nc3=O)n3ccc(=O)[nH]c3=O)n3ccc(=O)[nH]c3=O)n3cnc4c3nc(N)[nH]c4=O)[C@H]2O)c(=O)n1
Roles Classification
Biological Role(s): epitope
The biological role played by a material entity when bound by a receptor of the adaptive immune system. Specific site on an antigen to which an antibody binds.
View more via ChEBI Ontology
ChEBI Ontology
Outgoing 5'-CGUUCGCG-3' RNA fragment (CHEBI:84463) has role epitope (CHEBI:53000)
5'-CGUUCGCG-3' RNA fragment (CHEBI:84463) is a RNA fragment (CHEBI:82726)
IUPAC Name
C-G-U-U-C-G-C-G
Synonym Source
CpGpUpUpCpGpCpG ChEBI
Citation Waiting for Citations Type Source
7678618 PubMed citation Europe PMC
Last Modified
07 April 2015