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> Main
CHEBI:76792 - 5-(hydroxymethyl)cytosine
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ChEBI Name
5-(hydroxymethyl)cytosine
ChEBI ID
CHEBI:76792
Definition
A nucleobase analogue that is cytosine in which the hydrogen at position 5 is replaced by a hydroxymethyl group.
Stars
This entity has been manually annotated by the ChEBI Team.
Submitter
Bruce May
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Formula
C5H7N3O2
Net Charge
0
Average Mass
141.12800
Monoisotopic Mass
141.05383
InChI
InChI=1S/C5H7N3O2/c6-4-3(2-9)1-7-5(10)8-4/h1,9H,2H2,(H3,6,7,8,10)
InChIKey
RYVNIFSIEDRLSJ-UHFFFAOYSA-N
SMILES
Nc1nc(=O)[nH]cc1CO
Roles Classification
Chemical Role
(s):
Bronsted base
A molecular entity capable of accepting a hydron from a donor (Br
o
nsted acid).
(via
organic amino compound
)
Biological Role
(s):
mouse metabolite
Any mammalian metabolite produced during a metabolic reaction in a mouse (
Mus musculus
).
human metabolite
Any mammalian metabolite produced during a metabolic reaction in humans (
Homo sapiens
).
View more via ChEBI Ontology
ChEBI Ontology
Outgoing
5-(hydroxymethyl)cytosine (
CHEBI:76792
)
has functional parent
cytosine (
CHEBI:16040
)
5-(hydroxymethyl)cytosine (
CHEBI:76792
)
has role
human metabolite (
CHEBI:77746
)
5-(hydroxymethyl)cytosine (
CHEBI:76792
)
has role
mouse metabolite (
CHEBI:75771
)
5-(hydroxymethyl)cytosine (
CHEBI:76792
)
is a
aminopyrimidine (
CHEBI:38338
)
5-(hydroxymethyl)cytosine (
CHEBI:76792
)
is a
aromatic primary alcohol (
CHEBI:33857
)
5-(hydroxymethyl)cytosine (
CHEBI:76792
)
is a
nucleobase analogue (
CHEBI:67142
)
5-(hydroxymethyl)cytosine (
CHEBI:76792
)
is a
pyrimidone (
CHEBI:38337
)
Incoming
5-(β-
D
-glucosylmethyl)cytosine (
CHEBI:131616
)
has functional parent
5-(hydroxymethyl)cytosine (
CHEBI:76792
)
IUPAC Name
4-amino-5-(hydroxymethyl)pyrimidin-2(1
H
)-one
Synonyms
Sources
4-Amino-5-(hydroxymethyl)-2(1H)-pyrimidinone
ChemIDplus
5-hydroxymethylcytosine
ChEBI
Manual Xrefs
Databases
5-Hydroxymethylcytosine
Wikipedia
CPD-15531
MetaCyc
View more database links
Registry Numbers
Types
Sources
1123-95-1
CAS Registry Number
ChemIDplus
125478
Reaxys Registry Number
Reaxys
Citations
Types
Sources
19372391
PubMed citation
SUBMITTER
21151123
PubMed citation
Europe PMC
21778364
PubMed citation
SUBMITTER
24162071
PubMed citation
Europe PMC
24162993
PubMed citation
Europe PMC
24295785
PubMed citation
Europe PMC
24315686
PubMed citation
Europe PMC
24390216
PubMed citation
Europe PMC
24400731
PubMed citation
Europe PMC
26715454
PubMed citation
Europe PMC
26753520
PubMed citation
Europe PMC
26851753
PubMed citation
Europe PMC
27001475
PubMed citation
Europe PMC
Last Modified
30 March 2016