› › Function and Biology

Crystal structure of the mCD1d/xxa (JJ239)/iNKTCR ternary complex

Source organisms:
Biochemical function: molecular_function
Biological process: response to bacterium
Cellular component: cellular_component

Quick links

GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF07654
Domain description: Immunoglobulin C1-set domain
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
  2. Beta-2-microglobulin
  3. Ig-like domain-containing protein; T cell receptor beta constant 2
The deposited structure of PDB entry 6miy contains 2 copies of Pfam domain PF07654 (Immunoglobulin C1-set domain) in Ig-like domain-containing protein. Showing 1 copy in chain B [auth D].
The deposited structure of PDB entry 6miy contains 2 copies of Pfam domain PF07654 (Immunoglobulin C1-set domain) in Antigen-presenting glycoprotein CD1d1. Showing 1 copy in chain E.
The deposited structure of PDB entry 6miy contains 2 copies of Pfam domain PF07654 (Immunoglobulin C1-set domain) in Beta-2-microglobulin. Showing 1 copy in chain D [auth B].

PF07686
Domain description: Immunoglobulin V-set domain
Occurring in:
  1. Ig-like domain-containing protein
  2. Ig-like domain-containing protein; T cell receptor beta constant 2
The deposited structure of PDB entry 6miy contains 2 copies of Pfam domain PF07686 (Immunoglobulin V-set domain) in Ig-like domain-containing protein. Showing 1 copy in chain A [auth C].
The deposited structure of PDB entry 6miy contains 2 copies of Pfam domain PF07686 (Immunoglobulin V-set domain) in Ig-like domain-containing protein. Showing 1 copy in chain B [auth D].

PF09291
Domain description: Domain of unknown function (DUF1968)
Occurring in:
  1. Ig-like domain-containing protein
The deposited structure of PDB entry 6miy contains 2 copies of Pfam domain PF09291 (Domain of unknown function (DUF1968)) in Ig-like domain-containing protein. Showing 1 copy in chain A [auth C].

PF16497
Domain description: MHC-I family domain
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
The deposited structure of PDB entry 6miy contains 2 copies of Pfam domain PF16497 (MHC-I family domain) in Antigen-presenting glycoprotein CD1d1. Showing 1 copy in chain E.

InterPro InterPro annotations
IPR003597
Domain description: Immunoglobulin C1-set
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
  2. Beta-2-microglobulin
  3. Ig-like domain-containing protein; T cell receptor beta constant 2
IPR036179
Domain description: Immunoglobulin-like domain superfamily
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
  2. Beta-2-microglobulin
  3. Ig-like domain-containing protein
  4. Ig-like domain-containing protein; T cell receptor beta constant 2
IPR013783
Domain description: Immunoglobulin-like fold
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
  2. Beta-2-microglobulin
  3. Ig-like domain-containing protein
  4. Ig-like domain-containing protein; T cell receptor beta constant 2
IPR007110
Domain description: Immunoglobulin-like domain
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
  2. Beta-2-microglobulin
  3. Ig-like domain-containing protein
  4. Ig-like domain-containing protein; T cell receptor beta constant 2
IPR013106
Domain description: Immunoglobulin V-set domain
Occurring in:
  1. Ig-like domain-containing protein
  2. Ig-like domain-containing protein; T cell receptor beta constant 2
IPR015370
Domain description: T-cell receptor alpha chain, constant domain
Occurring in:
  1. Ig-like domain-containing protein
IPR003599
Domain description: Immunoglobulin subtype
Occurring in:
  1. Ig-like domain-containing protein
  2. Ig-like domain-containing protein; T cell receptor beta constant 2
IPR015707
Domain description: Beta-2-Microglobulin
Occurring in:
  1. Beta-2-microglobulin
IPR003006
Domain description: Immunoglobulin/major histocompatibility complex, conserved site
Occurring in:
  1. Beta-2-microglobulin
IPR011162
Domain description: MHC classes I/II-like antigen recognition protein
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
IPR011161
Domain description: MHC class I-like antigen recognition-like
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
IPR037055
Domain description: MHC class I-like antigen recognition-like superfamily
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1

Structure domains

CATH CATH domains
2.60.40.10
Class: Mainly Beta
Architecture: Sandwich
Topology: Immunoglobulin-like
Homology: Immunoglobulins
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
  2. Beta-2-microglobulin
  3. Ig-like domain-containing protein
  4. Ig-like domain-containing protein; T cell receptor beta constant 2
The deposited structure of PDB entry 6miy contains 2 copies of CATH domain 2.60.40.10 (Immunoglobulin-like) in Ig-like domain-containing protein. Showing 1 copy in chain A [auth C].
The deposited structure of PDB entry 6miy contains 4 copies of CATH domain 2.60.40.10 (Immunoglobulin-like) in Ig-like domain-containing protein. Showing 2 copies in chain B [auth D].
The deposited structure of PDB entry 6miy contains 2 copies of CATH domain 2.60.40.10 (Immunoglobulin-like) in Antigen-presenting glycoprotein CD1d1. Showing 1 copy in chain E.
The deposited structure of PDB entry 6miy contains 2 copies of CATH domain 2.60.40.10 (Immunoglobulin-like) in Beta-2-microglobulin. Showing 1 copy in chain D [auth B].
3.30.500.10
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
Homology: MHC class I-like antigen recognition-like
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
The deposited structure of PDB entry 6miy contains 2 copies of CATH domain 3.30.500.10 (Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1) in Antigen-presenting glycoprotein CD1d1. Showing 1 copy in chain E.

Quick links