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We train scientists at all levels to get the most out of publicly available biological data.

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Training events

July 2016

27
Ensembl release 85 webinar
27th Jul

Ensembl is a genome browser, offering gene, variation, comparative genomics and regulation data integrated together onto vertebrate genomes. Ensembl is updated on a regular basis, integrating new data and interfaces. This webinar details the updates you will find in the newest release, Ensembl 85.

First come, first served

28
Ontology Lookup Service (OLS)
28th Jul

This webinar will introduce the OLS system and show how it can be used to find ontologies and ontology terms. We will also cover how you can use OLS services to map existing data to ontologies.

First come, first served

August 2016

8
EMBL-EBI Functional Genomics Resources
8th 9th Aug

This course will provide a quick overview of popular databases and services, as well as the training opportunities provided by EBI. Major focus will be on Functional Genomics resources through the presentation of the Expression Atlas and Array Express functionalities.

First come, first served

September 2016

5
Analysis of High-Throughput Sequencing Data
5th 10th Sep

The aim of this course is to familiarise the participants with advanced data analysis methodologies and provide hands-on training on the latest analytical approaches.

Open application with selection

20
Structural Bioinformatics 2016
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
20th 23rd Sep

This course will explore bioinformatics data resources and tools for the interpretation and exploitation of biomacromolecular structures, focusing on how best to use structural information to gain the most from it in specific research contexts. This will include investigating the impact of genetic variation on structure, predicting protein structure and function, and exploring interactions with other macromolecules as well as with low-MW compounds.

Open application with selection

21
Ensembl Bite sized – September 2016
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
21st Sep

Work with the Ensembl team to get to grips with the Ensembl browser and data.

28
Ensembl Browser Workshop- EMBL-EBI- 28th September 2016
European Bioinformatics Institute (EMBL-EBI) - Training Room 2 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
28th Sep

Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart.

First come, first served

October 2016

3
Introduction to Next Generation Sequencing (October)
European Bioinformatics Institute (EMBL-EBI) - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
3rd 6th Oct

This course will provide an introduction to the technology, data analysis, tools and resources for next generation sequencing (NGS) data.

Open application with selection

18
Metagenomics Bioinformatics
European Bioinformatics Institute (EMBL-EBI) - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
18th 20th Oct

This course will cover the use of publicly available resources to manage, share, analyse and interpret metagenomics data, including both marker gene and whole gene shotgun (WGS) approaches. Delegates will gain hands-on experience using a range of data resources and tools, interspersed with lectures. Additionally, there will be the opportunity to discuss the challenges facing researchers in the field.

Open application with selection

20
BioExcel: Workflow Training for Computational Biomolecular Research
Barcelona Supercomputing Center - Computer Architechture Dept at Universitat Politecnica de Catalunya, c/Jordi Girona, 29, 08034,  Barcelona,  Barcelona, Spain
20th 21st Oct

Complex scientific studies require elaborate software pipelines necessitating interconnection of different tools and sources of data. In some cases, the complexity of the pipeline forces the definition of process dependencies, especially when those processes can be launched asynchronously in High Performance Computing (HPC) systems. Workflow managers such as Galaxy, Apache Taverna, PyCOMPSs, KNIME or Copernicus can be used to tackle this particular issue.

Open application with selection

20
ASHG 2016- Ensembl: hands-on exploring variation data and the VEP
Vancouver Convention Centre - 999-1055, Canada Place, Vancouver, , BC,  V6C 0C3, Canada
20th Oct

Work with the Ensembl Outreach team to get hands-on experience accessing variation data with the Ensembl genome browser and using the Variant Effect Predictor (VEP)

Drop in

November 2016

1
Exploring biological sequence data
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
1st 3rd Nov

This workshop will introduce you to approaches used for finding, analysing and using biological sequences. It will explore how to conduct searches across biological databases using both metadata and sequence data approaches. The course will explain how sequence searching approaches function, and how to effectively find relevant results. Practical elements will develop skills in locating and aligning sequences, and provide guidance on where to go next to learn more about the biological context of the sequences.

First come, first served

28
Exploring genomic variation with high throughput sequencing data
European Bioinformatics Institute (EMBL-EBI) - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
28th Nov1st Dec

The aim of this course is to familiarise participants with the analysis and interpretation of human genome sequence variation data derived from high-throughput sequencing applications.

Open application with selection

30
Ensembl Bite sized – November 2016
European Bioinformatics Institute (EMBL-EBI) - Training Room 2 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
30th Nov

Work with the Ensembl team to get to grips with the Ensembl browser and data.

First come, first served

December 2016

4
Proteomics Bioinformatics
European Bioinformatics Institute (EMBL-EBI) - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
4th 9th Dec

Participants will be able to go from MS spectra, to identifying peptides and finally to lists of protein identifiers that can be analysed further using a wide range of resources.

Open application with selection

February 2017

13
EMBO Practical Course on Metabolomics Bioinformatics for Life Scientists
European Bioinformatics Institute (EMBL-EBI) - Training Room 2 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
13th 17th Feb

This course will provide an overview of key issues that affect metabolomics studies, handling datasets and procedures for the analysis of metabolomics data using bioinformatics tools.

Open application with selection

March 2017

6
Introduction to Integrative Omics
European Bioinformatics Institute (EMBL-EBI) - Training Room 2 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
6th 10th Mar

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

April 2017

3
Introduction to Next Generation Sequencing (April)
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
3rd 6th Apr

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

24
Advanced RNA-Seq and ChiP-Seq Data Analysis
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
24th 28th Apr

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

May 2017

8
Computational Molecular Evolution
European Bioinformatics Institute (EMBL-EBI) - Training Room 2 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
8th 19th May

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

22
Networks and Pathways
European Bioinformatics Institute (EMBL-EBI) - Training Room 2 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
22nd 26th May

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

June 2017

6
Bioinformatics for Principal Investigators
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
6th 8th Jun

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

12
Data resources and bioinformatics tools for Immunologists
European Bioinformatics Institute (EMBL-EBI) - Training Room 2 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
12th 16th Jun

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

19
Cancer Genomics
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
19th 23rd Jun

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

26
Summer School in Bioinformatics
European Bioinformatics Institute (EMBL-EBI) - Training Room 2 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
26th 30th Jun

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

July 2017

9
In Silico Systems Biology
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
9th 14th Jul

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

September 2017

12
Bioinformatics for Principal Investigators
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
12th 14th Sep

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

October 2017

2
Metagenomics Bioinformatics
European Bioinformatics Institute (EMBL-EBI) - Training Room 2 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
2nd 6th Oct

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

9
Introduction to Next Generation Sequencing (October)
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
9th 12th Oct

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

23
Structural Bioinformatics
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
23rd 27th Oct

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

November 2017

6
Analysis of High-Throughput Sequencing Data
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
6th 10th Nov

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

December 2017

3
Proteomics Bioinformatics
European Bioinformatics Institute (EMBL-EBI) - Training Room 1 - Wellcome Genome Campus, Hinxton, Cambridge,  CB10 1SD, United Kingdom
3rd 8th Dec

Full details of this course are yet to be confirmed. Please register your interest.

Open application with selection

Online courses

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ArrayExpress: Discover functional genomics data quickly and easily

Author: Anja Füllgrabe

ArrayExpress is a database of functional genomics data. This course will give you an overview of how these data are stored in ArrayExpress and will teach you how to effectively search and retrieve data from the ArrayExpress website.[...]

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ArrayExpress: Quick tour

Author: Melissa Burke

This quick tour provides an overview of EMBL-EBI’s functional genomics database ArrayExpress. [...]

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Biocuration: An introduction

Author:

Claire O'Donovan, leader of the Protein Function Content team at EMBL-EBI, gives an introduction into biocuration and talks about what it is like to work as a biocurator and the skill sets you need.[...]

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Bioinformatics for the terrified

Author: Cath Brooksbank

This course will give you a broad overview of how bioinformatics can enable bench-based research. It is aimed at experimental researchers in the molecular life sciences who have little or no previous experience of using bioinformatics databases or tools.[...]

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Biomacromolecular structures: An introduction to EMBL-EBI resources

Author: Joanna Argasinska

Introduction to structural biology and related resources at EMBL-EBI. 

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Biomedical data: Ethical, legal and social implications

Author: Sarah Morgan

This course explores the ethical, legal and social implications (ELSI) of biomedical data sharing. The material will introduce the reasons why we want to share data, the benefits it can bring, and the challenges of doing so. It will present ideas for best practice and cover resources that provide guidance and advice for sharing data.[...]

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BioModels Database: Quick tour

Author: Camille Laibe

This quick tour provides a brief introduction to BioModels Database, EMBL-EBI's repository of mathematical models of biological interest.

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BioSamples Database RDF: webinar

Author: Marco Brandizi

This webinar is presented by Marco Brandizi and covers the BioSamples database resource description framework (RDF).

This video is best viewed using Google Chrome and in full screen mode. 

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BioSamples: Quick tour

Author: Adam Faulconbridge

This quick tour provides a brief introduction to the EBI's BioSamples data resource. Undergraduate-level understanding of biology would be an advantage. 

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Cellular Microscopy Phenotype Ontology (CMPO): Quick tour

Author: Gabry Rustici

This quick tour provides a brief introduction to the Cellular Microscopy Phenotype Ontology (CMPO). It covers the scientific principles that led to the creation of this ontology and how it can be used.

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ChEBI: Quick tour

Author: Gareth Owen

This quick tour provides a brief introduction to ChEBI, the EBI's Chemical Entities of Biological Interest database, which focuses on 'small' chemical compounds. For a more detailed walthrough of ChEBI, have a look at our ChEBI: the online dictionary for small molecules tutorial. [...]

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ChEBI: The online chemical dictionary for small molecules

Author: Namrata Kale

Chemical Entities of Biological Interest (ChEBI) is a user-friendly online chemical dictionary that focuses on the nomenclature, structure, and biological properties of 'small' molecules that may be encountered by anyone working in (or merely with an interest in) molecular biology. This course will show you what kind of information is available in ChEBI and how to access and query the database.[...]

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ChEMBL walkthrough: webinar

Author: Louisa Bellis

Louisa Bellis presents this webinar on ChEMBL - a manually curated chemical database of bioactive molecules with drug-like properties. This webinar took place on 22nd May 2015.[...]

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ChEMBL: Exploring bioactive drug-like molecules

Author: Louisa Bellis

This course will show you the content and search facilities for the ChEMBL database. ChEMBL is a database of bioactive drug-like molecules, and contains 2D structures, calculated properties and associated bioactivities.[...]

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ChEMBL: Quick tour

Author: Louisa Bellis

This quick tour provides a brief introduction to ChEMBL, the EBI's chemogenomics resource. For a more detailed walthrough of ChEMBL, have a look at our ChEMBL: Exploring bioactive drug-like molecules tutorial. [...]

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Complex Portal: Quick tour

Author: Birgit Meldal

This quick tour provides a brief introduction to EMBL-EBI's Complex Portal: a manually curated, encyclopedic resource of macromolecular complexes from a number of key model organisms.

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Complex Portal: webinar

Author: Birgit Meldal

Birgit Meldal gives an introduction to the Complex Portal. The Complex Portal provides manually curated summaries about macromolecular complexes, including lists of participants, function and property information as well as cross-references.[...]

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Computational chemistry in drug discovery

Author:

Darren Green, Director of Computational Chemistry at GSK, presents a talk on using computational chemistry approaches for drug discovery. The talk explains how informatics can aid many steps in the discovery and development process, to elucidate useful information about the biological target and properties of the small molecule under investigation.[...]

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DGVa: Quick tour

Author: Lisa Skipper

This quick tour provides a brief introduction to the DGVa, the EBI's Database of Genomic Variants archive. 

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diXa data warehouse: Exploring data from toxicogenomics studies

Author: Vera Matser

The diXa data warehouse is a curated collection of toxicogenomics experiments, accessible through the diXa website. This course will show you how to use the diXa warehouse and what data is available.[...]

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Drug repurposing

Author: John Overington

John Overington, Director of Bioinformatics at Stratified Medical, and former group leader at EMBL-EBI, presents a talk on the repurposing of drugs for novel therapeutic applications. The talk explores how computational approaches can be used to examine the properties of existing pharmaceutical compounds and looks at their application in rare, orphan, and poorly researched diseases.[...]

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Druggability and the druggable genome

Author: Anna Gaulton

Anna Gaulton presents this webinar on the druggable genome and the concept of druggability. She discusses why druggability is so important in drug discovery and what methods and databases you can used to determine the druggability of your targets.[...]

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EBI Metagenomics portal: Quick tour

Author: Hubert Denise

This quick tour provides a brief introduction to EBI Metagenomics - a free resource for archiving, analysing, visualising, discovering and comparing metagenomic and metatranscriptomic datasets.[...]

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EBI Metagenomics portal: Submitting metagenomics data to the European Nucleotide Archive

Author: Hubert Denise

This tutorial provides you with a step-by-step guide for submitting metagenomics data to the European Nucleotide Archive (ENA) in order for it to be analysed by the EBI Metagenomics resource.

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EBI: Next Generation Sequencing Practical Course

Author: Emily Perry

Here you will find a collection of video lectures from the 'Hands on training in Next-Generation Sequencing' course that took place at EMBL-EBI on 12-14 March 2012, available for you to watch in your own time.[...]

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EGA: Quick tour

Author: Gary Saunders

This Quick tour provides a brief introduction to the European Genome-phenome archive (EGA).

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EMBL-EBI resources: An introduction

Author: Tom Hancocks

This 30 minute webinar provides you with an introduction to the core data resources at EMBL-EBI (recorded 2nd February 2016).[...]

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EMBO Practical Course on Analysis of High-Throughput Sequencing Data

Author: Gabry Rustici

Here you will find a collection of materials including videos of lectures from the 'EMBO Practical Course on Analysis of High-Throughput Sequencing Data' that took place at EMBL-EBI on 23-29 October 2011.[...]

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Ensembl browser webinar series (2016)

Author: Emily Perry

Between the 24th March and 5th May 2016, we held series of live Ensembl webinars which came together to provide a complete browser course.[...]

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Ensembl Genomes (non-chordates): Quick tour

Author: Paul Kersey

This quick tour provides a brief introduction to Ensembl Genomes, the non-chordate genome browser.

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Ensembl tools: webinar

Author: Emily Perry

Emily Perry from the Ensembl Outreach Team presents this webinar on Ensembl tools, including the ever-popular Variant Effect Predictor (VEP), BLAST/BLAT and BioMart. This webinar took place on 22nd April 2015.[...]

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Ensembl Variant Effect Predictor (VEP): webinar

Author: Ben Moore

Want easy analysis of your own variant calls? The Ensembl Variant Effect Predictor (VEP) allows you to annotate variants with the genes and regulatory features they hit and what effect they have on them. It can also tell you if your variant is known or novel, and give you more information about known variants, such as population frequencies. You can use data from the VEP to prioritise variants from GWAS and whole variant calling studies, or from smaller scale single gene sequencing.[...]

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Ensembl: Browsing chordate genomes

Author: Giulietta M. Spudich

This course focuses on chordate (mostly vertebrate) genomes on the Ensembl website at www.ensembl.org.  It provides a quick beginner's guide to the overall structure of the Ensembl genome browser.

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Ensembl: Filmed API workshop

Author: Emily Perry

[...]

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Ensembl: Quick tour

Author: Emily Perry

[...]

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Enzyme Portal: Quick tour

Author: Sangya Pundir

This quick tour provides a brief introduction to the Enzyme Portal - a data resource that provides access to information from several enzyme-related databases, both at EMBL-EBI and the Swiss Institute of Bioinformatics (SIB).

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Europe PMC: Quick tour

Author: Philip Rossiter

This quick tour gives a brief introduction to Europe PMC, a free literature resource for biomedical and health researchers. 

Course updated in January 2016.

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European Nucleotide Archive (ENA): An introduction: webinar

Author: Marc Rossello

In this webinar, Marc Rossello gives an introduction the European Nucleotide Archive (ENA). This webinar took place on 8 April 2015.[...]

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European Nucleotide Archive: Quick tour

Author: Clara Amid

This quick tour provides a brief introduction to the European Nucleotide Archive, the EBI's repository for nucleotide sequence data. 

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European Nucleotide Archive: Using the primary nucleotide sequence resource

Author: Clara Amid

This course will show you how to search and retrieve nucleotide sequence data from the European Nucleotide Archive (ENA). The ENA provides sequence assembly details and biological annotation, and uses versioning to track sequence changes.

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Expression Atlas: Quick tour

Author: Maria Keays

This extended quick tour provides a brief introduction to the Expression Atlas (“Atlas”). Expression Atlas provides information on gene expression patterns under different biological conditions.[...]

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Functional genomics (I): Introduction and designing experiments

Author: Melissa Burke

This is the first part of our functional genomics course. This course will give you an introduction to functional genomics. We will introduce you to different types of functional genomics studies and discuss best practices when designing your own experiments.[...]

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Functional genomics (II): Common technologies and data analysis methods

Author: Laura Huerta

This is the second part of our functional genomics course. This course will introduce you to common technologies in functional genomics studies, including microarrays and next generation sequencing (NGS), with a special focus on RNA-sequencing (RNA-seq). We will look at important considerations when designing your experiments, data analysis methods, and discuss when to use one technology over another.[...]

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Functional genomics (III): Submitting your data and functional genomics databases

Author: Melissa Burke

This is the third and final part of our functional genomics course. In this course, we will look at why, when, where to submit your functional genomics data. [...]

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Functional genomics: An introduction to EMBL-EBI resources

Author: Amy Tang

This course will introduce the field of functional genomics and provide an overview of the major resources for this field at EMBL-EBI.[...]

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Genomics resources: webinar

Author: Laura Emery

This 25 minute webinar from Dr Laura Emery provides you with an introduction to EMBL-EBI and the data resources available (recorded on 25th February 2015).[...]

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Genomics: An introduction to EMBL-EBI resources

Author: Giulietta M. Spudich

This course will introduce the field of genomics and provide an overview of the different resources at the EBI which are related to this field. The course is aimed at graduates in the life sciences or related subjects, with an interest in using bioinformatics resources to solve problems related to genome biology.[...]

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GO: Quick tour

Author: Rebecca Foulger

This quick tour provides a brief introduction to the EBI's Gene Ontology resource. For information about gene ontology annotation, see the UniProt-GOA quick tour.[...]

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IMPC: Using the mouse phenotyping portal

Author: Terry Meehan

The International Mouse Phenotyping Consortium (IMPC) portal allows you to search for phenotypes, disease models and knockout mouse strains for your gene of interest. This course will show you how to use the IMPC portal and what data is available.[...]

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IntAct: Molecular interactions at EMBL-EBI

Author: Pablo Porras Millan

This course will show you what kind of information you can find in IntAct (one of the EBI's molecular interactions databases), how to access it, the different tools that can be used to access data and some practical examples on how to search and use the database.[...]

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IntAct: Quick tour

Author: Sandra Orchard

This quick tour provides a brief introduction to the EBI's molecular interactions database, IntAct.

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IntAct: The molecular interactions database at EMBL-EBI: webinar

Author: Pablo Porras Millan

This two-part webinar from Pablo Porras Millan provides you with an introduction to protein-protein interactions and the molecular interaction database IntAct (recorded on 30th September 2015). IntAct is a central, public repository where molecular interactions data can be stored and accessed. [...]

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InterPro: Functional and structural analysis of protein sequences

Author: Alex Mitchell

InterPro is a classification database that provides predictive information about protein sequences. This course will show you what kind of information is available in InterPro, how to access it, and how to search the database.

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InterPro: Quick tour

Author: Alex Mitchell

This quick tour provides a brief introduction to InterPro, the EBI's database of protein families, domains and functional sites. For a more detailed walkthrough of InterPro have a look at our InterPro tutorial.[...]

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Locus Reference Genomic (LRG) resource: webinar

Author: Joannella Morales

This webinar provides you with an overview and demo of the Locus Reference Genomic (LRG) resource - a manually curated reference resource for the reporting of clinically relevant variants.[...]

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MetaboLights: Quick tour

Author: Kenneth Haug

This quick tour provides a brief introduction to the EBI's metabolomics resource: MetaboLights.

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Metabolomics: An introduction

Author: Reza Salek

This course provides a basic introduction into the rapidly emerging field of metabolomics and its importance and applications.  

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myChEMBL: webinar

Author: George Papadatos

George Papadatos takes you through myChEMBL - the ChEMBL virtual machine. This video is best viewed in full screen, using Google Chrome.[...]

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PDBe: Exploring a Protein Data Bank (PDB) entry

Author: Sanchayita Sen

This course will show you how to explore the structural information in a PDB entry using the Protein Data Bank in Europe (PDBe) - EMBL-EBI's resource for the collection, organisation and dissemination of data on biological macromolecular structures.[...]

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PDBe: Quick tour

Author: Sameer Velankar

This quick tour provides a brief introduction to the Protein Data Bank in Europe (PDBe), EMBL-EBI's resource for the collection, organisation and dissemination of data on biological macromolecular structures.

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PDBe: Searching for biological macromolecular structures

Author: David Armstrong

The Protein Data Bank in Europe (PDBe) is a free and easily accessible resource for biological macromolecular structures. We collect, organise and disseminate data in both the Protein Data Bank (PDB) and the Electron Microscopy Data Bank (EMDB). This webinar will show you how access the data by searching the PDB and EMDB databases and how to use some of the tools and services that we also provide.[...]

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PDBe: Searching the Protein Data Bank

Author: Sanchayita Sen

This course will show you how to search the Protein Data Bank in Europe (PDBe) - EMBL-EBI's resource for the collection, organisation and dissemination of data on biological macromolecular structures. The course contains the following mini-tutorials, to help you navigate the resource: 'searching for all structures associated with a particular author' and 'finding PDB entries associated with a popular drug.' [...]

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PDBeChem: Searching for small molecules and small molecule fragments

Author: Gary Battle

PDBeChem allows you to search for chemical components (ligands, small molecules and monomers) that appear in PDB entries, and discover which protein structures bind a particular ligand. This course will show you how to use PDBeChem and what you can do with it.[...]

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PDBeFold: Searching for structural homologues of a protein

Author: Gary Battle

PDBeFold can be used to identify structural homologues in the PDB. PDBe's Secondary Structure Matching service (SSM) allows you to interactively compare, align and superimpose protein structures in 3D. This course will show you how to use PDBeFold and what you can do with it.[...]

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PDBePISA: Identifying and interpreting the likely biological assemblies of a protein structure

Author: Gary Battle

PDBePISA allows you to explore macromolecular (protein, DNA/RNA and ligand) interfaces and predict the quaternary structure of your protein. This course will show you how to use PDBePISA and what you can do with it.[...]

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Phylogenetics: An introduction

Author: Laura Emery

This course provides a basic introduction to the field of phylogenetics, with an emphasis on how to read and interpret phylogenetic trees.  [...]

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PRIDE and ProteomeXchange: webinar

Author: Juan Antonio Vizcaino

Juan Antonio Vizcaino presents this webinar on PRIDE and ProteomeXchange. PRIDE is a resource that stores mass spectrometry-based protein expression data (including e.g. mass spectra, peptide and protein identifications, among other data types) derived from user submissions.[...]

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PRIDE: Quick tour

Author: Juan Antonio Vizcaino

This quick tour provides a brief introduction to the EMBL-EBI's PRoteomics IDEntifications database, PRIDE.

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Protein classification: An introduction to EMBL-EBI resources

Author: Amaia Sangrador

This course will provide an introduction to protein classification and basic concepts, such as proteins families, domains and sequence features.

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Protein interactions and their importance

Author: Pablo Porras Millan

This course will provide an introduction to molecular interactions, their importance and the methodologies use to generate and capture interaction data.

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ProteomeXchange submissions via PRIDE

Author: Juan Antonio Vizcaino

How to submit MS/MS data to ProteomeXchange via PRIDE. This course is aimed at proteomics researchers with data that they want to make available through public-domain databases of proteomics experiments.

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Proteomics: An introduction to EMBL-EBI resources

Author: Sandra Orchard

This course will provide an overview of proteomics.  We will then introduce resources provided by the EBI related to proteomics.

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Reactome: Exploring and analysing biological pathways

Author: Steve Jupe

This course provides an overview to the Reactome pathway database web interface and the database content. For a short introduction to Reactome, please visit the Reactome quick tour. [...]

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Reactome: Exploring biological pathways: webinar

Author: Steve Jupe

This two-part webinar from Steve Jupe provides you with an introduction to Reactome and how you can use it to explore biological pathways (recorded on 6th May 2015).[...]

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Reactome: Quick tour

Author: Steve Jupe

This quick tour provides a brief introduction to Reactome, the biological pathway database.

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Rfam: Quick tour

Author: Sarah Burge

This quick tour provides a brief introduction to Rfam, the EBI's database of RNA families.

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RNAcentral: webinar

Author: Anton Petrov

This webinar provides you with an overview and demo of RNAcentral - an international database of non-coding RNA (ncRNA) sequences that aggregates data from multiple specialised ncRNA resources. This webinar took place on 28th October 2015. [...]

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Structural volume data

Author: Martyn Winn

This course provides a basic introduction of volume matching techniques in the field of structural bioinformatics. It explains the use of electron microscopy (EM) and electron tomography (ET) data in creating 3D volume maps of proteins, and the approaches that can be used to compare volumes. It describes how volume matching can be used to find similar structures, or to highlight specific differences between related structures.[...]

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SureChEMBL: Accessing chemical patent data: webinar

Author:

This two-part webinar from George Papadatos provides you with an introduction to the chemical patent database SureChEMBL (recorded on 11th March 2015).[...]

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Text mining: Key concepts and applications

Author: Jee-Hyub Kim

Jee-Hyub Kim and Senay Kafkas from the Literature Services team at EMBL-EBI present this talk on an introduction to text mining and its applications in service provision.[...]

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UniChem: EMBL-EBI’s mapping tool for small molecule database identifiers: webinar

Author: Jon Chambers

Jon Chambers presents this webinar on UniChem. UniChem is a very simple, large-scale non-redundant database of pointers between chemical structures and EMBL-EBI chemistry resources (recorded on 13th May 2015).[...]

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UniChem: Quick tour

Author: Jon Chambers

This quick tour provides a brief introduction to UniChem, a compound identifier mapping service. It covers the scientific principles behind the tool, and outlines the use of UniChem and UniChem 'Connectivity Search' to directly locate identical and related molecules in various sources.[...]

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UniProt-GOA: Quick tour

Author: Rachael Huntley

This quick tour provides a brief introduction to UniProt-GOA, the Gene Ontology Annotation resource. For information about the Gene Ontology, see the GO quick tour.[...]

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UniProt: Exploring protein sequence and functional information

Author: Michele Magrane

This course is a guide to the UniProt resource, including what kinds of information it provides and how to access the data using the UniProt website.[...]

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UniProt: Exploring protein sequence and functional information - webinar

Author: Sangya Pundir

In the first webinar, Sangya Pundir shows us how we can use UniProt to explore protein sequence and functional information.[...]

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UniProt: Programmatic access to UniProtKB: webinar

Author: Klemens Pichler

Klemens Pichler presents this webinar on accessing UniProtKB programmatically. This webinar was recorded on 3rd June 2015.[...]

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UniProt: Quick tour

Author: Michele Magrane

This quick tour provides a brief introduction to the Universal Protein Resource (UniProt). A full tutorial of UniProt can be found here.[...]

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User experience design

Author: Francis Rowland

This course introduces user experience design (UXD) in the context of bioinformatics tools and service development. It provides an overview of basic concepts and links to external resources on UXD where you can learn more.[...]

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Using sequence similarity searching tools at EMBL-EBI: webinar

Author: Andrew Cowley

This webinar focuses on how to use tools like BLAST and PSI-Search to find homologous sequences in EMBL-EBI databases, including tips on which tool and database to use, input formats, how to change parameters and how to interpret the results pages.[...]