Ligand clusters for UniProt code P04439

Ligand clusters for P04439: HLA class I histocompatibility antigen, A alpha chain from Homo sapiens

		Top 6 (of 25) ligand clusters Cluster 1. 270 ligand types 1103 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 5 ligand types 16 ligands Cluster 4. 3 ligand types 6 ligands Cluster 5. 3 ligand types 5 ligands Cluster 6. 3 ligand types 6 ligands
Representative protein: 2bckA

Structures

PDB		Schematic diagram
2bckA
5grgA
5d2lA
1w72A
6mppA
		more ...

Cluster 1 contains 270 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: GOL × 278 glycerin Glycerol PDB codes: 1tvb(A), 1tvh(A), 1x7q(A), 2av1(A), 2av7(A), 2bck(A), 2f53(A), 2git(A), 2gj6(A), 2gt9(A), 2gtw(A), 2gtz(A), 2guo(A), 2p5e(A), 2p5w(A), 2pye(A), 2x4n(A), 2x4o(A), 2x4p(A), 2x4q(A), 2x4r(A), 2x4s(A), 2x4t(A), 2x4u(A), 2x70(A), 3bo8(A), 3d3v(A), 3fqn(A), 3fqr(A), 3fqt(A), 3fqu(A), 3fqx(A), 3h7b(A), 3h9h(A), 3h9s(A), 3hpj(A), 3ixa(A), 3myj(A), 3o3a(A), 3o3b(A), 3o3d(A), 3o3e(A), 3pwj(A), 3pwl(A), 3pwn(A), 3pwp(A), 3qfd(A), 3qfj(A), 4ftv(A), 4gks(A), 4hx1(A), 4i4w(A), 4jfo(A), 4jfp(A), 4jfq(A), 4l29(A), 4l3c(A), 4mnq(A), 4nnx(A), 4nny(A), 4wj5(A), 5bs0(A), 5c08(A), 5c0a(A), 5c0b(A), 5c0c(A), 5c0e(A), 5c0f(A), 5c0i(A), 5d9s(A), 5ddh(A), 5enw(A), 5eu3(A), 5eu4(A), 5eu5(A), 5eu6(A), 5f7d(A), 5f9j(A), 5fa3(A), 5fa4(A), 5fdw(A), 5grd(A), 5grg(A), 5gsd(A), 5isz(A), 5men(A), 5meo(A), 5mer(A), 5n1y(A), 5nmf(A), 5nmg(A), 5nmh(A), 5nmk(A), 6joz(A), 6jp3(A), 6opd(A), 6ptb(A), 6pte(A), 6q3k(A), 6r2l(A), 6ss7(A), 6ss8(A), 6ss9(A), 6ssa(A).
		2. Ligand: IPA × 5 isopropyl alcohol Isopropyl alcohol PDB codes: 2p5e(A), 4uq3(A),
_Mg		3. Metal: _MG × 4 PDB codes: 3fqn(A), 3fqr(A), 3fqt(A), 6opd(A).
		4. Ligand: VAL × 3 valine PDB codes: 2x4n(A), 3mrm(A), 3o3d(A).
		5. Ligand: MET × 2 methionine PDB codes: 3mrd(A), 3mrj(A).
		6. Ligand: ACY × 1 acetic acid Acetic acid PDB code: 5c0f(A).
		7. Ligand: CIT × 1 citric acid Citric acid PDB code: 3mrg(A).
		8. Ligand: LYS × 1 l-lysine PDB code: 2x4u(A).
_Zn		9. Metal: _ZN × 1 PDB code: 1jf1(A).
		10. Ligand: EDO × 203 1,2-Ethanediol PDB codes: 3bgm(A), 3bh8(A), 3bh9(A), 3bhb(A), 3rew(A), 4gks(A), 4i4w(A), 4jfp(A), 4no2(A), 4no3(A), 4no5(A), 4qok(A), 5c07(A), 5c08(A), 5c0a(A), 5c0b(A), 5c0c(A), 5c0e(A), 5c0f(A), 5c0g(A), 5c0i(A), 5c0j(A), 5eu3(A), 5eu4(A), 5eu5(A), 5eu6(A), 5men(A), 5meo(A), 5mep(A), 5meq(A), 5mer(A), 5n1y(A), 5n6b(A), 5nme(A), 5nmf(A), 5nmg(A), 5nmh(A), 5nmk(A), 6ei2(A), 6o9b(A), 6r2l(A), 6rsy(A), 6ss7(A), 6ss8(A).
		11. Ligand: SO4 × 128 Sulfate ion PDB codes: 1s9w(A), 1s9x(A), 1s9y(A), 1x7q(A), 2bck(A), 2gj6(A), 2hn7(A), 2p5e(A), 2p5w(A), 2pye(A), 3gsn(H), 3uts(A), 4gkn(A), 4gks(A), 4i4w(A), 4jfd(A), 4jfe(A), 4jff(A), 4jfo(A), 4jfp(A), 5brz(A), 5bs0(A), 5c07(A), 5c08(A), 5c09(A), 5c0a(A), 5c0b(A), 5c0c(A), 5c0f(A), 5c0g(A), 5c0i(A), 5c0j(A), 5e00(A), 5eu4(A), 5eu5(A), 5eu6(A), 5men(A), 5meo(A), 5mep(A), 5mer(A), 5n6b(A), 5nme(A), 5nmf(A), 5nmg(A), 5nmk(A), 6eqa(A), 6eqb(A), 6o9c(A), 6pbh(A), 6r2l(A), 6ss7(A), 6ss8(A), 6ss9(A),
_Cd		12. Metal: _CD × 35 PDB codes: 3fqn(A), 3fqr(A), 3fqt(A), 3fqu(A), 3fqw(A), 3fqx(A), 4nnx(A), 4nny(A), 6ei2(A),
		13. Ligand: MES × 16 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 2x4o(A), 2x4p(A), 2x4q(A), 2x4s(A), 2x4t(A), 2x4u(A), 2x70(A), 4jfq(A), 5c0f(A), 5mer(A), 6o9b(A), 6o9c(A),
		14. Ligand: PEG × 15 Di(hydroxyethyl)ether PDB codes: 4u6x(A), 4u6y(A), 5n6b(A), 5wsh(A), 6o9b(A), 6r2l(A), 6ss9(A),
		15. Ligand: PG4 × 13 Tetraethylene glycol PDB codes: 5c0c(A), 5c0e(A), 6o9b(A),
		16. Ligand: GLY-ILE-LEU-GLY-PHE-VAL-PHE-THR-LEU × 12 PDB codes: 1hhi(A), 1oga(A), 2vlj(A), 2vlk(A), 2vll(A), 2vlr(A), 5e6i(I), 5euo(A), 5isz(A), 5jhd(A), 5tez(A).
		17. Ligand: LEU-LEU-PHE-GLY-TYR-PRO-VAL-TYR-VAL × 12 PDB codes: 1ao7(A), 1bd2(A), 1duz(A), 1hhk(A), 1im3(A), 2av1(A), 2av7(A), 3ixa(A), 4e5x(A), 4ftv(A), 5iro(A),
		18. Ligand: GLU-LEU-ALA-GLY-ILE-GLY-ILE-LEU-THR-VAL × 9 PDB codes: 1jf1(A), 3qdg(A), 3qdm(A), 4jff(A), 4l3e(A), 5e9d(A), 5nht(H), 5nqk(H), 6dkp(A).
		19. Ligand: SER-LEU-LEU-MET-TRP-ILE-THR-GLN-CYS × 7 PDB codes: 1s9w(A), 2bnr(A), 2f53(A), 2f54(A), 2p5e(A), 2p5w(A), 2pye(A).
		20. Ligand: ARG-TYR-PRO-LEU-THR-PHE-GLY-TRP-CYS-PHE × 6 PDB codes: 3nfn(A), 3qzw(A), 3vxn(A), 3vxr(A), 5hgh(A), 5xov(A).
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Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: THR-LEU-THR-SER-CYS-ASN-THR-SER-VAL × 1 PDB code: 1hhg(A).

Cluster 3 contains 5 ligand types

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Ligand		Description
		1. Ligand: GOL × 7 glycerin Glycerol PDB codes: 3h7b(A), 3hpj(A), 4jfq(A), 4wj5(A), 5gsd(A), 5isz(A), 5nmh(A).
		2. Ligand: EDO × 6 1,2-Ethanediol PDB codes: 4i4w(A), 5c0e(A), 5c0f(A), 5c0i(A), 5meo(A), 5nmk(A).
		3. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 6o9b(A).
		4. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 5c0e(A).
		5. Ligand: SO4 × 1 Sulfate ion PDB code: 6eqb(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 1tvh(A).
		2. Ligand: EDO × 4 1,2-Ethanediol PDB codes: 5c0e(A), 5c0i(A), 5n1y(A), 5nmh(A).
		3. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 2x4u(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5eu5(A).
		2. Ligand: EDO × 3 1,2-Ethanediol PDB codes: 4no0(A), 5mer(A), 6o9b(A).
		3. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 2x4p(A).

Cluster 6 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 1x7q(A), 5n1y(A).
		2. Ligand: EDO × 3 1,2-Ethanediol PDB codes: 3bgm(A), 4no3(A), 5c0f(A).
		3. Ligand: SO4 × 1 Sulfate ion PDB code: 2p5w(A).