Services

PDBe API - programmatic access to PDB data
Services

PDBe’s REST API is a programmatic way to obtain information from the PDB. You can access details about sample, experiment, models, compounds, cross-references, publications, quality, assemblies and more.

PDBe advanced search feature
Services

Advanced search facility to search PDBe resources, with over 100 data categories and sequence search (FASTA/ Phmmer).

Structure Integration with Function, Taxonomy and Sequence (SIFTS)
Services
Structure Integration with Function, Taxonomy and Sequence (SIFTS) is a project in the PDBe-KB resource for residue-level mapping between UniProt and PDB entries. SIFTS also provides annotation from the IntEnz, GO, InterPro, Pfam, CATH, SCOP, PubMed…
PDBeFold - identify structural homologues
Services

Identify structural homologues in the PDB. PDBe's Secondary Structure Matching service (SSM) allows you to interactively compare, align and superimpose protein structures in 3D.

PDBePISA interfaces image PDBe
Services

Explore macromolecular (protein, DNA/RNA and ligand) interfaces and predict the quarternary structure of your protein.

PDBeChem - find ligands, small molecules and monomers
Services

PDBeChem provides a comprehensive search facility for finding chemical components (ligands, small molecules and monomers) referred to in PDB entries and maintained by wwPDB.

wwPDB OneDep system for PDB and EMDB deposition services
Services

Access to the wwPDB OneDep system for PDB and EMDB deposition services

Assess the quality of models and maps using the wwPDB validation server
Services

Assess the quality of models and maps using the wwPDB validation server

PDBe download service
Services

Batch downloads for arbitrary subsets of the PDB data including structural and experimental data, their validations and annotations.

FTP access to PDB and EMDB entries, and other PDBe resources.
Services

FTP access to PDB and EMDB entries, and other PDBe resources.

The PDB Component Library
Software

The PDB Component Library is a collection of web components for visualization of PDB and related protein structural data.

Mol* (/'molstar/) is a modern web-based open-source toolkit for visualisation and analysis of large-scale molecular data
Software

Mol* (/'molstar/) is a modern web-based open-source toolkit for visualisation and analysis of large-scale molecular data

PDBe GitHub repository
Software

GitHub repository for PDBe, providing access to source code for a host of open-access PDBe software packages.

PDBeCIF mmCIF parser

PDBeCIF is a lightweight pure python package for manipulating mmCIF formatted files distributed by the wwPDB. The package contains objects and modules for accessing mmCIF data in different ways depending on the type and speed of task required.

PDBe chem v2 process
Software

FTP access to small molecule data referred in PDB entries. This includes extended mmCIF definitions, images, and chemical components in various file formats.

PDBe deprecated services
Services

PDBe has redesigned its webpage and services. As a result some of the old services have been retired but their functionality is available via newly designed services and web pages.