EMD-1001 › Validation analysis
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Real space refinement of acto-myosin structures from sectioned muscle.
Validation summary
!!! 68177 atoms outside the volume box. !!!
!!! 82874 atoms outside the volume box. !!!
!!! 81656 atoms outside the volume box. !!!
!!! 71559 atoms outside the volume box. !!!
!!! 79880 atoms outside the volume box. !!!
!!! 56785 atoms outside the volume box. !!!
!!! 69902 atoms outside the volume box. !!!
!!! 80152 atoms outside the volume box. !!!
!!! 77613 atoms outside the volume box. !!!
!!! 61847 atoms outside the volume box. !!!
!!! 78944 atoms outside the volume box. !!!
Model evaluation bars:
| Model | Metric | Evaluation bar | Average value |
|---|---|---|---|
| 1m8q | Q-score |
-0.0
|
|
| Atom Inclusion |
0.005
|
||
| CCC |
CCC bar not available
|
-
|
|
| SMOC |
SMOC bar not available
|
-
|
| Model | Metric | Evaluation bar | Average value |
|---|---|---|---|
| 1mvw | Q-score |
0.0
|
|
| Atom Inclusion |
0.002
|
||
| CCC |
CCC bar not available
|
-
|
|
| SMOC |
SMOC bar not available
|
-
|
| Model | Metric | Evaluation bar | Average value |
|---|---|---|---|
| 1o18 | Q-score |
-0.0
|
|
| Atom Inclusion |
0.003
|
||
| CCC |
CCC bar not available
|
-
|
|
| SMOC |
SMOC bar not available
|
-
|
| Model | Metric | Evaluation bar | Average value |
|---|---|---|---|
| 1o19 | Q-score |
0.001
|
|
| Atom Inclusion |
0.007
|
||
| CCC |
CCC bar not available
|
-
|
|
| SMOC |
SMOC bar not available
|
-
|
| Model | Metric | Evaluation bar | Average value |
|---|---|---|---|
| 1o1a | Q-score |
-0.001
|
|
| Atom Inclusion |
0.003
|
||
| CCC |
CCC bar not available
|
-
|
|
| SMOC |
SMOC bar not available
|
-
|
| Model | Metric | Evaluation bar | Average value |
|---|---|---|---|
| 1o1b | Q-score |
-0.001
|
|
| Atom Inclusion |
0.013
|
||
| CCC |
CCC bar not available
|
-
|
|
| SMOC |
SMOC bar not available
|
-
|
| Model | Metric | Evaluation bar | Average value |
|---|---|---|---|
| 1o1c | Q-score |
-0.0
|
|
| Atom Inclusion |
0.006
|
||
| CCC |
CCC bar not available
|
-
|
|
| SMOC |
SMOC bar not available
|
-
|
| Model | Metric | Evaluation bar | Average value |
|---|---|---|---|
| 1o1d | Q-score |
-0.0
|
|
| Atom Inclusion |
0.005
|
||
| CCC |
CCC bar not available
|
-
|
|
| SMOC |
SMOC bar not available
|
-
|
| Model | Metric | Evaluation bar | Average value |
|---|---|---|---|
| 1o1e | Q-score |
-0.001
|
|
| Atom Inclusion |
0.004
|
||
| CCC |
CCC bar not available
|
-
|
|
| SMOC |
SMOC bar not available
|
-
|
| Model | Metric | Evaluation bar | Average value |
|---|---|---|---|
| 1o1f | Q-score |
-0.0
|
|
| Atom Inclusion |
0.011
|
||
| CCC |
CCC bar not available
|
-
|
|
| SMOC |
SMOC bar not available
|
-
|
| Model | Metric | Evaluation bar | Average value |
|---|---|---|---|
| 1o1g | Q-score |
-0.002
|
|
| Atom Inclusion |
0.005
|
||
| CCC |
CCC bar not available
|
-
|
|
| SMOC |
SMOC bar not available
|
-
|
|
Additional validation information
Please find validation analyses used for peer review in the wwPDB validation reports for this entries map (EMD-1001) and model-map 1m8q and EMD-1001 , or 1m8q and EMD-1001 , or 1m8q and EMD-1001 , or 1m8q and EMD-1001 , or 1m8q and EMD-1001 , or 1m8q and EMD-1001 , or 1m8q and EMD-1001 , or 1m8q and EMD-1001 , or 1m8q and EMD-1001 , or 1m8q and EMD-1001 , or 1m8q and EMD-1001 . Validation analysis of this entry is available in the main page. Documentation for the outputs of EMDB Validation Analysis can be found on the help page.
Tomogram parameters
Tomogram map visualisation
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Orthogonal projection
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More projections
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Orthogonal projection (false-colour)
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Orthogonal minimum-value projections
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Orthogonal standard-deviation projections
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Orthogonal minimum-value projections
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Orthogonal median-value projections
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Central slices
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Largest variance slices
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X Index: 598
Y Index: 598
Z Index: 15
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Orthogonal projection (false-colour)
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Map and 11 fitted model
Map with model 1m8q (Real space refinement of acto-myosin structures from sectioned muscle.)
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Chain scores summary
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Residue fit view based on Q-score
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Map with model 1mvw (Real space refinement of acto-myosin structures from sectioned muscle.)
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Chain scores summary
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Residue fit view based on Q-score
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Title 
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Map with model 1o18 (Real space refinement of acto-myosin structures from sectioned muscle.)
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Chain scores summary
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Residue fit view based on Q-score
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Map with model 1o19 (Real space refinement of acto-myosin structures from sectioned muscle.)
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Chain scores summary
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Residue fit view based on Q-score
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Title 
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Map with model 1o1a (Real space refinement of acto-myosin structures from sectioned muscle.)
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Chain scores summary
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Residue fit view based on Q-score
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Title 
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Map with model 1o1b (Real space refinement of acto-myosin structures from sectioned muscle.)
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Chain scores summary
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Residue fit view based on Q-score
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Title 
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Map with model 1o1c (Real space refinement of acto-myosin structures from sectioned muscle.)
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Chain scores summary
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Residue fit view based on Q-score
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Title 
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Map with model 1o1d (Real space refinement of acto-myosin structures from sectioned muscle.)
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Chain scores summary
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Residue fit view based on Q-score
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Title 
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Map with model 1o1e (Real space refinement of acto-myosin structures from sectioned muscle.)
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Chain scores summary
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Residue fit view based on Q-score
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Title 
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Map with model 1o1f (Real space refinement of acto-myosin structures from sectioned muscle.)
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Z
Chain scores summary
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Residue fit view based on Q-score
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Title 
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Z
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Map with model 1o1g (Real space refinement of acto-myosin structures from sectioned muscle.)
X
Y
Z
Chain scores summary
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Residue fit view based on Q-score
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Title 
X
Y
Z
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Depositor mask(s)
Mask with primary map (msk_1)
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Mask with primary map (msk_2)
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Mask with primary map (msk_3)
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Mask with primary map (msk_4)
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Mask with primary map (msk_5)
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Mask with primary map (msk_6)
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Mask with primary map (msk_7)
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Mask with primary map (msk_8)
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Mask with primary map (msk_9)
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Mask with primary map (msk_10)
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Mask with primary map (msk_11)
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Mask with primary map (msk_12)
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Mask with primary map (msk_13)
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Mask with primary map (msk_14)
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Mask with primary map (msk_15)
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Mask with primary map (msk_16)
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Mask with primary map (msk_17)
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Mask with primary map (msk_18)
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Mask with primary map (msk_19)
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Mask with primary map (msk_20)
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Mask with primary map (msk_21)
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Mask with primary map (msk_22)
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Mask with primary map (msk_23)
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Mask with primary map (msk_24)
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Mask with primary map (msk_25)
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Mask with primary map (msk_26)
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