Round 46

This round is Closed

Registration is closed Participant list

Announcement

Dear CAPRI participants,

We hereby announce the launch of CAPRI Round 46. This Round is the third common CASP-CAPRI Assembly prediction challenge, involving a close collaboration not only between the CASP team and the CAPRI Management Committee, but also between the two communities overall.

The 13th CASP session will take place between May 1 and July 30, 2018. CAPRI Round 45 will take place over the same period. Members of both the CASP and CAPRI communities will be invited to model the interfaces of protein hetero-complexes, homo-multimers and domain-domain interactions in appropriate CASP13 targets. Description of the CASP13 experiment can be found at: http://predictioncenter.org/casp13/index.cgi

As in previous CASP-CAPRI Rounds the number or type of targets that will be made available for this round are currently unknown, as targets are being submitted to CASP piecemeal during the entire duration of the CASP13 session. Decision on targets designated for CAPRI docking and scoring predictions (only a subset of the CASP13 targets prediction is expected to represent appropriate CAPRI targets), will be made by CAPRI MC members (Shoshana Wodak, Sameer Velankar, and Marc Lensink), and communicated to CASP.

Target information: Information on the different targets and submission deadlines (for servers, dockers and scorer) will be provided on the CAPRI website. Target information provided by CASP will be available on the CASP website. To ensure that the models submitted by predictor groups strictly adhere to the standard format and residue numbering, a template with the standard submission format will be available to predictor, uploader and scorer groups on the CAPRI website. All models will be checked for the format consistency prior to their acceptance!

Registration: CAPRI participants wishing to take part in this CAPRI prediction round are invited to register for the entire round in advance. CAPRI registration for Round 46 will be open starting May 6th, and the first targets will be announced on Monday, May 7th.
For pragmatic reasons, we require CAPRI participants to register also with the CASP13 session, which is already open. Only groups registered with both experiments will be part of the joint CASP/CAPRI experiment. In addition, you should include your CASP group ID into your submission, using a REMARK field.

When registering with CASP, participants should click the radio button "Do you want to receive an e-mail when a target is designated as CAPRI?" In this case they will be receiving an automatic message each time a new CAPRI target is designated.
Upon receiving this message participants should consult the CAPRI site for additional target information and for the timelines for submission of server models, docking models, and scoring submissions.

Model Submission: There will be exchange of models between CASP and CAPRI. 
As per usual CAPRI Rounds, CAPRI-only participants are invited to submit 100 models through the CAPRI gateway (http://pdbe.org/capri), with the first 10 models ranked in order of decreasing model quality. The CAPRI team will forward the top 5 models to CASP for evaluation.
Regular CASP participants should submit up to 5 models through the CASP submission interface. Only models submitted through the CAPRI gateway will be considered for the scoring experiment.

Model evaluation: All the submitted models (to CAPRI or CASP) of homo- and hetero-complexes on CAPRI-selected targets, will be evaluated by the CAPRI evaluation team as usual. 
The models (top 5 only) submitted by CAPRI participants will also be evaluated by the CASP independent evaluation team. The CASP and CAPRI assessor teams will meet to discuss how the evaluation results will be published in the CASP13 Special Issue.

Yours sincerely

The CAPRI Management Committee


Important notice: format conversion

Dear CAPRI participants,

We have now completed the conversion of your submissions to the stricter CASP format.
We managed to convert the majority of the submissions. The submission that we were unable to covert i.e. those that didn't pass the CASP validation procedure despite our various efforts, are listed in the provided Table.

CAPRI group ID CASP registration ID Failed targets & error message
P1 0265-7299-8583 T156_P1.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P3 1555-5613-9105 T137_P3.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
T147_P3.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits.
T149_P3.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. 
T152_P3.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
T155_P3.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P4 4311-6130-4507 T139_P4.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits.
T147_P4.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits.
T151_P4.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
T158_P4.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits.
P8 1515-6817-9670 T149_P8.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. 
T151_P8.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P9 1515-6817-9670 T148_P9.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. 
T149_P9.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. 
P12 5579-4535-6493 T150_P12.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
T151_P12.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P13 8018-2138-6885 T154_P13.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P14 4315-5351-6054 T137_P14.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits.
T143_P14.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits.
T144_P14.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
T147_P14.brk.1.org: # ERROR! B chain ID was used before
T152_P14.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P16 5700-9963-1781 T151_P16.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P21 1057-5659-8433 T146_P21.brk.1.org: # ERROR! Sequence of chain C in model doesn't match any sequence of subunits.
P23 9678-3033-248 T144_P23.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
T146_P23.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P24 1262-4451-3572 T137_P24.brk.1.org: # ERROR! There are several instances of ATOM O for residue H 0 chain A in the prediction.
T138_P24.brk.1.org: # ERROR! There are several instances of ATOM O for residue P 485 chain A in the prediction.
P27 3976-6090-8662 T142_P27.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P29 6444-5433-5686 T149_P29.brk.1.org: # ERROR! There are several instances of ATOM CA for residue R 975 chain A in the prediction.
P30 0021-5318-3444 T146_P30.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits.
T149_P30.brk.2.org: # ERROR! There are several instances of ATOM CA for residue R 975 chain A in the prediction.
P32 5421-0785-4056 T137_P32.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
T144_P32.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
T152_P32.brk.2.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P35 5421-0785-4056 T152_P35.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
T155_P35.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.


CAPRI - CASP Target ID:

CAPRI target CASP target
T137 T0965
T138 T0966
T139 T0961
T140 T0973
T141 T0976
T142 H0974
T143 T0983
T144 T0984
T145 T0988
T146 H0993
T147 T0995
T148 T0997
T149 T0999
T150 S0999
T151 X0999
T152 T1003
T153 T1006
T154 T1009
T155 H1015
T156 H1017
T157 H1019
T158 T1020
T159 H1021

Targets

Dates

Registration starts: May 1, 2018

Target Status Prediction Scoring
Start End (server) End (human) Start End
Target 137 Closed May 17, 2018 May 21, 2018 June 7, 2018 June 15, 2018 June 20, 2018
Target 138 Closed May 17, 2018 May 21, 2018 June 7, 2018 June 15, 2018 June 20, 2018
Target 139 Closed May 21, 2018 May 24, 2018 June 14, 2018 June 18, 2018 June 22, 2018
Target 140 Closed May 24, 2018 May 29, 2018 June 14, 2018 June 18, 2018 June 22, 2018
Target 141 Closed May 29, 2018 June 1, 2018 June 19, 2018 June 20, 2018 June 26, 2018
Target 142 Closed May 25, 2018 June 1, 2018 June 19, 2018 June 22, 2018 June 28, 2018
Target 143 Closed June 5, 2018 June 8, 2018 June 28, 2018 June 29, 2018 July 6, 2018
Target 144 Closed June 6, 2018 June 9, 2018 June 29, 2018 June 30, 2018 July 7, 2018
Target 145 Closed June 6, 2018 June 9, 2018 June 29, 2018 June 30, 2018 July 7, 2018
Target 146 Closed June 15, 2018 June 18, 2018 July 6, 2018 July 7, 2018 July 14, 2018
Target 147 Closed June 19, 2018 June 22, 2018 July 10, 2018 July 11, 2018 July 18, 2018
Target 148 Closed June 21, 2018 June 24, 2018 July 12, 2018 July 13, 2018 July 20, 2018
Target 149 Closed June 22, 2018 June 25, 2018 July 13, 2018 Aug. 24, 2018 Aug. 29, 2018
Target 150 Closed July 17, 2018 July 20, 2018 Aug. 5, 2018 Aug. 24, 2018 Aug. 29, 2018
Target 151 Closed Aug. 1, 2018 Aug. 5, 2018 Aug. 20, 2018 Aug. 24, 2018 Aug. 29, 2018
Target 152 Closed June 27, 2018 June 30, 2018 July 18, 2018 July 19, 2018 July 26, 2018
Target 153 Closed July 3, 2018 July 6, 2018 July 24, 2018 July 25, 2018 Aug. 2, 2018
Target 154 Closed July 4, 2018 July 7, 2018 July 25, 2018 July 26, 2018 Aug. 3, 2018
Target 155 Closed July 11, 2018 July 18, 2018 Aug. 1, 2018 Aug. 2, 2018 Aug. 9, 2018
Target 156 Closed July 12, 2018 July 19, 2018 Aug. 2, 2018 Aug. 3, 2018 Aug. 10, 2018
Target 157 Closed July 13, 2018 July 20, 2018 Aug. 3, 2018 Aug. 4, 2018 Aug. 11, 2018
Target 158 Closed July 13, 2018 July 20, 2018 Aug. 3, 2018 Aug. 10, 2018 Aug. 15, 2018
Target 159 Closed July 14, 2018 July 21, 2018 Aug. 4, 2018 Aug. 10, 2018 Jan. 17, 2019

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