Round 46

Registration is closed Participant list

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Announcement

Dear CAPRI participants,

We hereby announce the launch of CAPRI Round 46. This Round is the third common CASP-CAPRI Assembly prediction challenge, involving a close collaboration not only between the CASP team and the CAPRI Management Committee, but also between the two communities overall.

The 13th CASP session will take place between May 1 and July 30, 2018. CAPRI Round 45 will take place over the same period. Members of both the CASP and CAPRI communities will be invited to model the interfaces of protein hetero-complexes, homo-multimers and domain-domain interactions in appropriate CASP13 targets. Description of the CASP13 experiment can be found at: http://predictioncenter.org/casp13/index.cgi

As in previous CASP-CAPRI Rounds the number or type of targets that will be made available for this round are currently unknown, as targets are being submitted to CASP piecemeal during the entire duration of the CASP13 session. Decision on targets designated for CAPRI docking and scoring predictions (only a subset of the CASP13 targets prediction is expected to represent appropriate CAPRI targets), will be made by CAPRI MC members (Shoshana Wodak, Sameer Velankar, and Marc Lensink), and communicated to CASP.

Target information: Information on the different targets and submission deadlines (for servers, dockers and scorer) will be provided on the CAPRI website. Target information provided by CASP will be available on the CASP website. To ensure that the models submitted by predictor groups strictly adhere to the standard format and residue numbering, a template with the standard submission format will be available to predictor, uploader and scorer groups on the CAPRI website. All models will be checked for the format consistency prior to their acceptance!

Registration: CAPRI participants wishing to take part in this CAPRI prediction round are invited to register for the entire round in advance. CAPRI registration for Round 46 will be open starting May 6th, and the first targets will be announced on Monday, May 7th.
For pragmatic reasons, we require CAPRI participants to register also with the CASP13 session, which is already open. Only groups registered with both experiments will be part of the joint CASP/CAPRI experiment. In addition, you should include your CASP group ID into your submission, using a REMARK field.

When registering with CASP, participants should click the radio button "Do you want to receive an e-mail when a target is designated as CAPRI?" In this case they will be receiving an automatic message each time a new CAPRI target is designated.
Upon receiving this message participants should consult the CAPRI site for additional target information and for the timelines for submission of server models, docking models, and scoring submissions.

Model Submission: There will be exchange of models between CASP and CAPRI. 
As per usual CAPRI Rounds, CAPRI-only participants are invited to submit 100 models through the CAPRI gateway (http://pdbe.org/capri), with the first 10 models ranked in order of decreasing model quality. The CAPRI team will forward the top 5 models to CASP for evaluation.
Regular CASP participants should submit up to 5 models through the CASP submission interface. Only models submitted through the CAPRI gateway will be considered for the scoring experiment.

Model evaluation: All the submitted models (to CAPRI or CASP) of homo- and hetero-complexes on CAPRI-selected targets, will be evaluated by the CAPRI evaluation team as usual. 
The models (top 5 only) submitted by CAPRI participants will also be evaluated by the CASP independent evaluation team. The CASP and CAPRI assessor teams will meet to discuss how the evaluation results will be published in the CASP13 Special Issue.

Yours sincerely

The CAPRI Management Committee

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Important notice: format conversion

Dear CAPRI participants,

We have now completed the conversion of your submissions to the stricter CASP format.
We managed to convert the majority of the submissions. The submission that we were unable to covert i.e. those that didn't pass the CASP validation procedure despite our various efforts, are listed in the provided Table.

CAPRI group ID	CASP registration ID	Failed targets & error message
P1	0265-7299-8583	T156_P1.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P3	1555-5613-9105	T137_P3.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. T147_P3.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits. T149_P3.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.  T152_P3.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. T155_P3.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P4	4311-6130-4507	T139_P4.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits. T147_P4.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits. T151_P4.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. T158_P4.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits.
P8	1515-6817-9670	T149_P8.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.  T151_P8.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P9	1515-6817-9670	T148_P9.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.  T149_P9.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P12	5579-4535-6493	T150_P12.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. T151_P12.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P13	8018-2138-6885	T154_P13.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P14	4315-5351-6054	T137_P14.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits. T143_P14.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits. T144_P14.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. T147_P14.brk.1.org: # ERROR! B chain ID was used before T152_P14.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P16	5700-9963-1781	T151_P16.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P21	1057-5659-8433	T146_P21.brk.1.org: # ERROR! Sequence of chain C in model doesn't match any sequence of subunits.
P23	9678-3033-248	T144_P23.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. T146_P23.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P24	1262-4451-3572	T137_P24.brk.1.org: # ERROR! There are several instances of ATOM O for residue H 0 chain A in the prediction. T138_P24.brk.1.org: # ERROR! There are several instances of ATOM O for residue P 485 chain A in the prediction.
P27	3976-6090-8662	T142_P27.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P29	6444-5433-5686	T149_P29.brk.1.org: # ERROR! There are several instances of ATOM CA for residue R 975 chain A in the prediction.
P30	0021-5318-3444	T146_P30.brk.1.org: # ERROR! Sequence of chain B in model doesn't match any sequence of subunits. T149_P30.brk.2.org: # ERROR! There are several instances of ATOM CA for residue R 975 chain A in the prediction.
P32	5421-0785-4056	T137_P32.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. T144_P32.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. T152_P32.brk.2.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.
P35	5421-0785-4056	T152_P35.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits. T155_P35.brk.1.org: # ERROR! Sequence of chain A in model doesn't match any sequence of subunits.

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CAPRI - CASP Target ID:

CAPRI target	CASP target
T137	T0965
T138	T0966
T139	T0961
T140	T0973
T141	T0976
T142	H0974
T143	T0983
T144	T0984
T145	T0988
T146	H0993
T147	T0995
T148	T0997
T149	T0999
T150	S0999
T151	X0999
T152	T1003
T153	T1006
T154	T1009
T155	H1015
T156	H1017
T157	H1019
T158	T1020
T159	H1021

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Targets

Dates

Registration starts: May 1, 2018, midnight

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