Structure for PPACK (S01.217 inhibitor)

Summary Structure Literature

 

PDB Organism Resolution Comment
1ABJ Homo sapiens 2.40 Å complex with D-Phe-Pro-Arg chloromethylketone
Catalytic residues are shown in ball-and-stick representation: His406 in purple, Asp462 in pink and Ser568 in orange. The N-terminal light chain is shown in yellow. D-Phe-Pro-Arg-chloromethane is shown in grey in ball-and-stick representation.
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TERTIARY STRUCTURE DATA
Comment Resolution PDB PDBe SCOP CATH PDBSum Proteopedia Reference
thrombin ( Homo sapiens)
complex with D-Phe-Pro-Arg chloromethylketone 2.40 Å 1ABJ 1ABJ 1ABJ 1ABJ 1ABJ 1ABJ Qiu et al., 1992
complex with hirugen and phenylmethylenecarboxy-(methyleneamino-formyl-diphenylmethyl)methy-pro-boroval 2.10 Å 1AIX 1AIX 1AIX 1AIX 1AIX 1AIX Bode et al., 1992
alpha-thrombin; complex with des-Asp55 hirudin and D-Phe-Pro-Arg-chloromethylketone 3.00 Å 1DWE 1DWE 1DWE 1DWE 1DWE 1DWE Banner & Hadvary, 1991
fast form mutant Arg77Ala; complex with PPACK 1.91 Å 1SFQ 1SFQ 1SFQ 1SFQ 1SFQ 1SFQ
slow form; complex with PPACK 1.55 Å 1SHH 1SHH 1SHH 1SHH 1SHH 1SHH
anticoagulant mutant Trp215Ala/Glu217Ala; complex with PPACK 2.40 Å 1TQ7 1TQ7 1TQ7 1TQ7 1TQ7 1TQ7
Gly193Ala mutant; complex with PPACK 2.00 Å 1Z8I 1Z8I 1Z8I 1Z8I 1Z8I 1Z8I
Cys191Ala-Cys220Ala mutant; complex with the inhibitor PPACK 1.80 Å 2PGQ 2PGQ 2PGQ 2PGQ 2PGQ 2PGQ
Ser195Thr mutant; complex with PPACK 1.84 Å 4RKO 4RKO 4RKO 4RKO 4RKO 4RKO
coagulation factor IXa ( Homo sapiens)
Lys98Thr variant; complex with PPACK 1.30 Å 5JB9 5JB9 5JB9 5JB9 5JB9 5JB9
Val16Ile/Lys98Thr/Tyr177Thr/Ile212Val variant; complex with PPACK 1.40 Å 5JBA 5JBA 5JBA 5JBA 5JBA 5JBA
Val16Ile/Lys98Thr/Tyr177Thr/Ile213val variant; complex with PPACK 1.90 Å 5JBC 5JBC 5JBC 5JBC 5JBC 5JBC
thrombin ( Homo sapiens)
Trp215Ala/Glu217Ala mutant fused to EGF456 of thrombomodulin via a 31-residue linker; complex with PPACK 2.34 Å 5TO3 5TO3 5TO3 5TO3 5TO3 5TO3