EMD-11145 Validation analysis

EMD-11145 › Validation analysis

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SARS CoV-2 Spike protein, Closed conformation, C3 symmetry

Validation summary

Resolution:

Method:

Map released:

Last modified:

Sample name:

2.85 Å (depositor provided) (FSC 0.143 CUT-OFF)

Single particle reconstruction

2020-09-30

2023-03-15

SARS CoV-2 Spike protein, Closed conformation, C3 symmetry

Organism:

Fitted atomic model:

Severe acute respiratory syndrome coronavirus 2

6zb5 (6 chains, 24127 atoms)

Model evaluation bars:

Model	Metric	Average value
6zb5	Q-score	0.619
	Atom Inclusion	0.992
	CCC	0.845
	SMOC	0.668

Additional validation information

Please find validation analyses used for peer review in the wwPDB validation reports for this entries map (EMD-11145) and model-map (6zb5 and EMD-11145). Validation analysis of this entry is available in the main page. Documentation for the outputs of EMDB Validation Analysis can be found on the help page.

Map parameters

Recommended contour level:

Number of grid points:

Voxel size:

Minimum value:

Maximum value:

Average value:

Standard deviation:

0.006

220 × 220 × 220

1.050 × 1.050 × 1.050 Å

-0.197

0.316

0.001

0.012

Primary map visualisation

Projections

Raw map visualisation (Raw map calculated from deposited two half-maps)

Volume graphs

Download: EMDB Mask Learn more EMDB Raw Map Learn more Depositor Half Map 1 Depositor Half Map 2

Map resolution (Å) measured by Fourier Shell Correlation (FSC)
	EMDB calculated FSC			Author FSC
Threshold	Unmasked	Masked	Corrected	Author
FSC 0.143	3.08	2.90	2.90	2.84
FSC 0.5	3.53	3.23	3.23	3.11
FSC half-bit	3.13	2.94	2.94	2.87