EMDB Validation Analysis : EMD-61082

Validation summary

Resolution:
Method:
Map released:
Last modified:
Sample name:
8.2 Å (depositor provided) (FSC 0.143 CUT-OFF)
Subtomogram averaging
2025-02-05
2025-02-05
Conformation of E1 with PSBD and LD in E2 components of pyruvate dehydrogenase complex
Organism:
Sus scrofa

Model evaluation bars:

Additional validation information

Please find validation analyses used for peer review in the wwPDB validation reports for this entries map (EMD-61082). More extensive validation analysis of this entry is available in the EMDB Validation Analysis resource pages. Documentation for the outputs of EMDB Validation Analysis can be found on the help page.

Map parameters

Recommended contour level:
Number of grid points:
Voxel size:
Minimum value:
Maximum value:
Average value:
Standard deviation:
0.0028
80 × 80 × 80
3.000 × 3.000 × 3.000 Å
-0.003
0.010
0.000
0.001

Content

Primary map visualisation

Projections

Raw map visualisation (Raw map calculated from deposited two half-maps)

Volume graphs
Download: EMDB Mask Learn more EMDB Raw Map Learn more Depositor Half Map 1 Depositor Half Map 2
Map resolution (Å) measured by Fourier Shell Correlation (FSC)
EMDB calculated FSC Author FSC
Threshold Unmasked Masked Corrected Author
FSC 0.143 9.01 8.03 8.31 -
FSC 0.5 11.72 9.39 9.54 -
FSC half-bit 9.29 8.26 8.50 -

EMDB generated mask(s)

FSC mask with raw map
Title
X projection

X

Y projection

Y

Z projection

Z

Symmetry Information
  • Symmetry table
    • Symmetry type Symmetry fold Directional vector of symmetry axis
      X, Y, Z      		 Angle (degrees) Peak height
      Symmetry axis #1 C 2 -0.003076, -0.05869, +0.9983 +180 +0.5939
  • Symmetry element table
    • Symmetry element type Symmetry element fold Directional vector of symmetry axis
      X, Y, Z      		 Angle (degrees)
      Symmetry element #1 E +1 +1, +0, +0 +0
      Symmetry element #2 C +2 -0.003076, -0.05869, +0.9983 +180