EMD-44696 Validation analysis

EMD-44696 › Validation analysis

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Motor domain from full-length human dynein-1 bound to microtubules in 5mM AMPPNP condition

Validation summary

Resolution:

Method:

Map released:

Last modified:

Sample name:

2.9 Å (depositor provided) (FSC 0.143 CUT-OFF)

Single particle reconstruction

2025-04-23

motor domain from full-length human dynein-1 bound to microtubules in 5mM AMPPNP condition

Organism:

Fitted atomic model:

Homo sapiens

9bmd (1 chains, 24085 atoms)

Model evaluation bars:

Model	Metric	Average value
9bmd	Q-score	0.526
	Atom Inclusion	0.533
	CCC	0.796
	SMOC	0.649

Additional validation information

Please find validation analyses used for peer review in the wwPDB validation reports for this entries map (EMD-44696) and model-map (9bmd and EMD-44696). Validation analysis of this entry is available in the main page. Documentation for the outputs of EMDB Validation Analysis can be found on the help page.

Map parameters

Recommended contour level:

Number of grid points:

Voxel size:

Minimum value:

Maximum value:

Average value:

Standard deviation:

0.3

384 × 384 × 384

0.825 × 0.825 × 0.825 Å

-0.841

1.441

-0.002

0.036

Primary map visualisation

Projections

Raw map visualisation (Raw map calculated from deposited two half-maps)

Volume graphs

Download: EMDB Mask Learn more EMDB Raw Map Learn more Depositor Half Map 1 Depositor Half Map 2

Map resolution (Å) measured by Fourier Shell Correlation (FSC)
	EMDB calculated FSC			Author FSC
Threshold	Unmasked	Masked	Corrected	Author
FSC 0.143	3.72	3.10	3.10	2.88
FSC 0.5	4.42	3.46	3.46	3.29
FSC half-bit	3.82	3.14	3.14	2.92