EMD-44598 Validation analysis

EMD-44598 › Validation analysis

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BRD-9327 bound EFPA transporter of Mycobacterium tuberculosis

Validation summary

Resolution:

Method:

Map released:

Last modified:

Sample name:

3.0 Å (depositor provided) (FSC 0.143 CUT-OFF)

Single particle reconstruction

2025-02-05

EfpA

Organism:

Fitted atomic model:

Mycobacterium tuberculosis

9biq (2 chains, 3584 atoms)

Model evaluation bars:

Model	Metric	Evaluation bar	Average value
9biq	Q-score		0.544
	Atom Inclusion		0.765
	CCC	CCC bar not available	-
	SMOC		0.585

Additional validation information

Please find validation analyses used for peer review in the wwPDB validation reports for this entries map (EMD-44598) and model-map (9biq and EMD-44598). Validation analysis of this entry is available in the main page. Documentation for the outputs of EMDB Validation Analysis can be found on the help page.

Map parameters

Recommended contour level:

Number of grid points:

Voxel size:

Minimum value:

Maximum value:

Average value:

Standard deviation:

0.6

440 × 440 × 440

0.834 × 0.834 × 0.834 Å

-2.536

3.849

0.001

0.067

Primary map visualisation

Projections

Raw map visualisation (Raw map calculated from deposited two half-maps)

Volume graphs

Download: EMDB Mask Learn more EMDB Raw Map Learn more Depositor Half Map 1 Depositor Half Map 2

Map resolution (Å) measured by Fourier Shell Correlation (FSC)
	EMDB calculated FSC			Author FSC
Threshold	Unmasked	Masked	Corrected	Author
FSC 0.143	4.02	3.22	3.21	3.00
FSC 0.5	7.31	3.70	3.69	3.53
FSC half-bit	4.11	3.29	3.25	3.06