EMD-33672 › Validation analysis
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Cryo-EM structure of human GABA transporter GAT1 bound with GABA in NaCl solution in an inward-occluded state at 2.4 angstrom
Validation summary
Model evaluation bars:
| Model | Metric | Evaluation bar | Average value |
|---|---|---|---|
| 7y7w | Q-score |
0.652
|
|
| Atom Inclusion |
0.913
|
||
| CCC |
0.854
|
||
| SMOC |
0.65
|
||
Additional validation information
Please find validation analyses used for peer review in the wwPDB validation reports for this entries map (EMD-33672) and model-map (7y7w and EMD-33672). Validation analysis of this entry is available in the main page. Documentation for the outputs of EMDB Validation Analysis can be found on the help page.
Map parameters
Primary map visualisation
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Orthogonal projection
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Orthogonal surface
views (at contour level: 0.6)
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More projections
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Orthogonal projection (false-colour)
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Orthogonal maximum-value projections
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Orthogonal standard-deviation projections
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Orthogonal minimum-value projections
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Orthogonal median-value projections
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Central slices
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Largest variance slices
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X Index: 99
Y Index: 96
Z Index: 105
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Orthogonal projection (false-colour)
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Raw map visualisation (Raw map calculated from deposited two half-maps)
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Orthogonal projections of raw map
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More projections
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Orthogonal projections of raw map
(false-colour)
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Title 
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Z
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Orthogonal maximum-value projections of raw
map
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Y
Z
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Orthogonal minimum-value projections of
raw map
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Y
Z
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Orthogonal median-value projections of
raw map
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Central slices of raw map
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Largest variance slices of raw map
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Orthogonal projections of raw map
(false-colour)
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| Map resolution (Å) measured by Fourier Shell Correlation (FSC) | ||||
|---|---|---|---|---|
| EMDB calculated FSC | Author FSC | |||
| Threshold | Unmasked | Masked | Corrected | Author |
| FSC 0.143 | 2.96 | 2.62 | 2.61 | - |
| FSC 0.5 | 3.45 | 2.98 | 2.98 | - |
| FSC half-bit | 3.03 | 2.64 | 2.64 | - |
Map and 1 fitted model
Map with model 7y7w (Cryo-EM structure of human GABA transporter GAT1 bound with GABA in NaCl solution in an inward-occluded state at 2.4 angstrom)
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Chain scores summary
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Atom inclusion at 0.6 contour level
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Residue fit view based on Q-score
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EMDB generated mask(s)
FSC mask with raw map
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