EMDB Validation Analysis : EMD-23463

EMD-23463 › Validation analysis

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NorA in complex with Fab25

Validation summary

Resolution:
Method:
Map released:
Last modified:
Sample name:
3.74 Å (depositor provided) (FSC 0.143 CUT-OFF)
Single particle reconstruction
2022-04-20
2022-07-13
NorA:Fab25 complex
Organism:
Fitted atomic model:
Staphylococcus aureus
7lo7 (3 chains, 6043 atoms)

Model evaluation bars:

Model Metric Evaluation bar Average value
7lo7 Q-score
0.467
Atom Inclusion
0.657
CCC
0.794
SMOC
0.646

Additional validation information

Please find validation analyses used for peer review in the wwPDB validation reports for this entries map (EMD-23463) and model-map (7lo7 and EMD-23463). Validation analysis of this entry is available in the main page. Documentation for the outputs of EMDB Validation Analysis can be found on the help page.

Map parameters

Recommended contour level:
Number of grid points:
Voxel size:
Minimum value:
Maximum value:
Average value:
Standard deviation:
7.0
256 × 256 × 256
1.079 × 1.079 × 1.079 Å
-36.408
55.296
0.000
1.000
Image not available

Primary map visualisation

Projections
Volume graphs
Download: EMDB Mask Learn more EMDB Raw Map Learn more Depositor Half Map 1 Depositor Half Map 2

Map and 1 fitted model

Map with model 7lo7 (NorA in complex with Fab25)
Primary map with model views
Title
X projection

X

Y projection

Y

Z projection

Z

Map-model fit plots
Chain scores summary
Strudel Information
Chain:
Score range:
Symmetry Information
No rotational symmetry has been detected in this map.