EMDB Validation Analysis : EMD-20420

EMD-20420 › Validation analysis

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ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 3

Validation summary

Resolution:
Method:
Map released:
Last modified:
Sample name:
4.28 Å (depositor provided) (FSC 0.143 CUT-OFF)
Single particle reconstruction
2020-03-11
2020-03-11
ClpX-ClpP-substrate-ATPrS
Organism:
Fitted atomic model:
Escherichia coli
6pp6 (7 chains, 7815 atoms)

Model evaluation bars:

Model Metric Evaluation bar Average value
6pp6 Q-score
0.312
Atom Inclusion
0.796
CCC
0.805
SMOC
0.81

Additional validation information

Please find validation analyses used for peer review in the wwPDB validation reports for this entries map (EMD-20420) and model-map (6pp6 and EMD-20420). Validation analysis of this entry is available in the main page. Documentation for the outputs of EMDB Validation Analysis can be found on the help page.

Map parameters

Recommended contour level:
Number of grid points:
Voxel size:
Minimum value:
Maximum value:
Average value:
Standard deviation:
3.16
192 × 192 × 192
1.160 × 1.160 × 1.160 Å
-9.284
25.998
0.000
1.000
Image not available

Primary map visualisation

Projections
Volume graphs
Download: EMDB Mask Learn more EMDB Raw Map Learn more Depositor Half Map 1 Depositor Half Map 2
Provided FSC(Å)
FSC 0.143 4.00
FSC 0.5 4.39
FSC half-bit -

Map and 1 fitted model

Map with model 6pp6 (ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 3)
Primary map with model views
Title
X projection

X

Y projection

Y

Z projection

Z

Map-model fit plots
Chain scores summary
Symmetry Information
No rotational symmetry has been detected in this map.