EMDB Validation Analysis : EMD-1216

EMD-1216 › Validation analysis

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Cryo-electron tomographic structure of an immunodeficiency virus envelope complex in situ.

Validation summary

Resolution:
Method:
Map released:
Last modified:
Sample name:
28.0 Å (depositor provided) (FSC 0.5 CUT-OFF)
Subtomogram averaging
2006-09-05
2013-12-11
Simian Immunodeficiency Virus mne Envelope Complex

Model evaluation bars:

Additional validation information

Please find validation analyses used for peer review in the wwPDB validation reports for this entries map (EMD-1216). Validation analysis of this entry is available in the main page. Documentation for the outputs of EMDB Validation Analysis can be found on the help page.

Map parameters

Recommended contour level:
Number of grid points:
Voxel size:
Minimum value:
Maximum value:
Average value:
Standard deviation:
8160.0
63 × 63 × 63
5.470 × 5.470 × 5.470 Å
-15307.000
20000.000
117.354
3616.260
Image not available

Primary map visualisation

Projections
Volume graphs
Download: EMDB Mask Learn more EMDB Raw Map Learn more Depositor Half Map 1 Depositor Half Map 2

Depositor mask(s)

Mask with primary map (msk_1)
Title
X projection

X

Y projection

Y

Z projection

Z

Mask with primary map (msk_2)
Title
X projection

X

Y projection

Y

Z projection

Z

Symmetry Information
  • Symmetry table
    • Symmetry type Symmetry fold Directional vector of symmetry axis
      X, Y, Z      		 Angle (degrees) Peak height
      Symmetry axis #1 C 3 +0.007119, +0.007792, +0.9999 +120 +0.8903
  • Symmetry element table
    • Symmetry element type Symmetry element fold Directional vector of symmetry axis
      X, Y, Z      		 Angle (degrees)
      Symmetry element #1 E +1 +1, +0, +0 +0
      Symmetry element #2 C +3 +0.007119, +0.007792, +0.9999 -120
      Symmetry element #3 C +3 +0.007119, +0.007792, +0.9999 +120