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Head-to-tail double ring assembly from truncated PVY coat protein
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8oph
Q-score: 0.474
Kavcic L, Kezar A, Koritnik N, Znidaric MT, Klobucar T, Vicic Z, Merzel F, Holden E, Benesch JLP, Podobnik M
Commun Chem (2024) 7 pp. 14-14 [ DOI: doi:10.1038/s42004-024-01100-x Pubmed: 38233506 ]
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 7x47
Q-score: 0.474
Zheng Q, Zhu R, Yin Z, Xu L, Sun H, Yu H, Wu Y, Jiang Y, Huang Q, Huang Y, Zhang D, Liu L, Yang H, He M, Zhou Z, Jiang Y, Chen Z, Zhao H, Que Y, Kong Z, Zhou L, Li T, Zhang J, Luo W, Gu Y, Cheng T, Li S, Xia N
Cell Host Microbe (2022) 30 pp. 1279-1294.e6 [ DOI: doi:10.1016/j.chom.2022.08.001 Pubmed: 36002016 ]
- 2e6 heavy chain (13 kDa, Protein from Mus musculus)
- Vp2 (29 kDa, Protein from Coxsackievirus B1)
- Virion protein 1 (31 kDa, Protein from Coxsackievirus B1)
- 2e6 light chain (11 kDa, Protein from Mus musculus)
- Genome polyprotein (26 kDa, Protein from Coxsackievirus B1)
- Cryo-em structure of coxsackievirus b1 empty particle in complex with nab 2e6 (classified from cvb1 mature virion in complex with 8a10 and 2e6) (Complex from Coxsackievirus B1)
Resolution: 3.82 Å
EM Method: Single-particle
Fitted PDBs: 7x4k
Q-score: 0.465
Zheng Q, Zhu R, Yin Z, Xu L, Sun H, Yu H, Wu Y, Jiang Y, Huang Q, Huang Y, Zhang D, Liu L, Yang H, He M, Zhou Z, Jiang Y, Chen Z, Zhao H, Que Y, Kong Z, Zhou L, Li T, Zhang J, Luo W, Gu Y, Cheng T, Li S, Xia N
Cell Host Microbe (2022) 30 pp. 1279-1294.e6 [ DOI: doi:10.1016/j.chom.2022.08.001 Pubmed: 36002016 ]
- Cryo-em structure of coxsackievirus b1 empty particle in complex with nab 9a3 (classified from cvb1 mature virion in complex with 8a10 and 9a3) (Complex from Coxsackievirus B1)
- 9a3 light chain (11 kDa, Protein from Mus musculus)
- Vp3 (26 kDa, Protein from Coxsackievirus B1)
- Virion protein 1 (31 kDa, Protein from Coxsackievirus B1)
- Genome polyprotein (29 kDa, Protein from Coxsackievirus B1)
- 9a3 heavy chain (13 kDa, Protein from Mus musculus)
Coxsackievirus B3 (VP3-234Q) incubation with CD55 at pH7.4
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 7vy5
Q-score: 0.591
Wang Q, Yang Q, Liu C, Wang G, Song H, Shang G, Peng R, Qu X, Liu S, Cui Y, Wang P, Xu W, Zhao X, Qi J, Yang M, Gao GF
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2118590119 Pubmed: 35046043 ]
- Capsid protein vp1 (30 kDa, Protein from Coxsackievirus B3)
- Coxsackievirus b3 (Virus from Coxsackievirus B3)
- Capsid protein vp2 (28 kDa, Protein from Coxsackievirus B3)
- Complement decay-accelerating factor (13 kDa, Protein from Homo sapiens)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus B3)
- Genome polyprotein (7 kDa, Protein from Coxsackievirus B3)
- Palmitic acid (256 Da, Ligand)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7bg6
Q-score: 0.631
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ Pubmed: 33947819 DOI: doi:10.1073/pnas.2024251118 ]
- Rhinovirus b14 (8 MDa, Virus from Rhinovirus B14)
- Genome polyprotein (7 kDa, Protein from HRV-14)
- Genome polyprotein (28 kDa, Protein from HRV-14)
- Rna-octamer (5'-r(p*up*gp*up*up*up*up*up*a)-3') (2 kDa, RNA from Rhinovirus B14)
- Genome polyprotein (26 kDa, Protein from HRV-14)
- Water (18 Da, Ligand)
- Genome polyprotein (30 kDa, Protein from HRV-14)
HRV14 in complex with its receptor ICAM-1
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7bg7
Q-score: 0.696
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ Pubmed: 33947819 DOI: doi:10.1073/pnas.2024251118 ]
- Genome polyprotein (26 kDa, Protein from HRV-14)
- Genome polyprotein (7 kDa, Protein from HRV-14)
- Rhinovirus (Complex from Human rhinovirus 14)
- Genome polyprotein (28 kDa, Protein from HRV-14)
- Human rhinovirus 14 (10 MDa, Virus)
- Genome polyprotein (32 kDa, Protein from HRV-14)
- Intercellular adhesion molecule 1 (Complex from Homo sapiens)
- Water (18 Da, Ligand)
- Intercellular adhesion molecule 1 (49 kDa, Protein from Homo sapiens)
Rhinovirus-14 ICAM-1 activated particle at pH 6.2
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7nul
Q-score: 0.431
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ Pubmed: 33947819 DOI: doi:10.1073/pnas.2024251118 ]
- Genome polyprotein (28 kDa, Protein from HRV-14)
- Rhinovirus b14 (7 MDa, Virus from Rhinovirus B14)
- P1 (25 kDa, Protein from HRV-14)
- Genome polyprotein (32 kDa, Protein from HRV-14)
Rhinovirus-14 ICAM-1 empty particle at pH 6.2
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7num
Q-score: 0.487
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ Pubmed: 33947819 DOI: doi:10.1073/pnas.2024251118 ]
- Genome polyprotein (28 kDa, Protein from HRV-14)
- Rhinovirus b14 (7 MDa, Virus from Rhinovirus B14)
- P1 (25 kDa, Protein from HRV-14)
- Genome polyprotein (32 kDa, Protein from HRV-14)
Rhinovirus 14 ICAM-1 virion-like particle at pH 6.2
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7nun
Q-score: 0.472
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ Pubmed: 33947819 DOI: doi:10.1073/pnas.2024251118 ]
- Rhinovirus b14 (7 MDa, Virus from Rhinovirus B14)
- Octanucleotide (2 kDa, RNA from Rhinovirus B14)
- Genome polyprotein (7 kDa, Protein from HRV-14)
- Genome polyprotein (28 kDa, Protein from HRV-14)
- Genome polyprotein (32 kDa, Protein from HRV-14)
- Genome polyprotein (26 kDa, Protein from HRV-14)
Rhinovirus 14 empty particle at pH 6.2
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7nuo
Q-score: 0.395
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ Pubmed: 33947819 DOI: doi:10.1073/pnas.2024251118 ]
- Genome polyprotein (28 kDa, Protein from HRV-14)
- Rhinovirus b14 (7 MDa, Virus from Rhinovirus B14)
- P1 (25 kDa, Protein from HRV-14)
- Genome polyprotein (32 kDa, Protein from HRV-14)