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CRISPR-Cas type III-D effector complex
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8s9t
Q-score: 0.623
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex bound to a self-target RNA in the pre-cleavage state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8s9v
Q-score: 0.561
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Magnesium ion (24 Da, Ligand)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Self-target rna (19 kDa, RNA from Synechocystis sp. PCC 6803)
- Water (18 Da, Ligand)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex bound to self-target RNA in a post-cleavage state
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8s9x
Q-score: 0.456
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Self-target rna (19 kDa, RNA from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex consensus map
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex local refinement map
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
- Crispr-cas type iii-d effector complex (351 kDa, Complex from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex bound to a target RNA local refinement map
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
CRISPR-Cas type III-D effector complex bound to a target RNA consensus map
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
Combined linker domain of N-DRC and associated proteins Tetrahymena
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8tid
Q-score: 0.072
Ghanaeian A, Majhi S, McCafferty CL, Nami B, Black CS, Yang SK, Legal T, Papoulas O, Janowska M, Valente-Paterno M, Marcotte EM, Wloga D, Bui KH
Nat Commun (2023) 14 pp. 5741-5741 [ Pubmed: 37714832 DOI: doi:10.1038/s41467-023-41480-7 ]
- Coiled-coil domain-containing protein 153 (22 kDa, Protein from Tetrahymena thermophila)
- L-shape (unknown-protein) (50 kDa, Protein from Tetrahymena thermophila)
- Dynein regulatory complex protein 10 (51 kDa, Protein from Tetrahymena thermophila)
- Flagella associated protein (114 kDa, Protein from Tetrahymena thermophila)
- Duf4201 domain-containing protein (94 kDa, Protein from Tetrahymena thermophila)
- Dynein regulatory complex protein 1/2 n-terminal domain-containing protein (98 kDa, Protein from Tetrahymena thermophila)
- Aaa family atpase cdc48 subfamily protein (101 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 91 (76 kDa, Protein from Tetrahymena thermophila)
- Lrrc48 protein (68 kDa, Protein from Tetrahymena thermophila)
- Wd40 domain protein (152 kDa, Protein from Tetrahymena thermophila)
- Kinase domain protein (39 kDa, Protein from Tetrahymena thermophila)
- Ef hand protein (124 kDa, Protein from Tetrahymena thermophila)
- Flagellar associated protein (42 kDa, Protein from Tetrahymena thermophila)
- Dynein regulatory complex protein 9 (44 kDa, Protein from Tetrahymena thermophila)
- Coiled-coil lobo-like protein, putative (101 kDa, Protein from Tetrahymena thermophila)
- Ef-hand calcium-binding domain protein (22 kDa, Protein from Tetrahymena thermophila)
- Calmodulin 7-2 (23 kDa, Protein from Tetrahymena thermophila)
- Coiled-coil protein, putative (60 kDa, Protein from Tetrahymena thermophila)
- Coiled-coil protein, putative (105 kDa, Protein from Tetrahymena thermophila)
- Growth-arrest-specific microtubule-binding protein (56 kDa, Protein from Tetrahymena thermophila)
- Combined linker domain of n-drc and associated proteins tetrahymena (Cell from Tetrahymena thermophila)
- Wd40 domain protein (151 kDa, Protein from Tetrahymena thermophila)
- Cfap20 (22 kDa, Protein from Tetrahymena thermophila)
- Growth-arrest-specific microtubule-binding protein (55 kDa, Protein from Tetrahymena thermophila)
- Flagellar associated protein (52 kDa, Protein from Tetrahymena thermophila)
Baseplate of Nexin-dynein regulatory complex from Tetrahymena thermophila
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8tek
Q-score: 0.273
Ghanaeian A, Majhi S, McCafferty CL, Nami B, Black CS, Yang SK, Legal T, Papoulas O, Janowska M, Valente-Paterno M, Marcotte EM, Wloga D, Bui KH
Nat Commun (2023) 14 pp. 5741-5741 [ Pubmed: 37714832 DOI: doi:10.1038/s41467-023-41480-7 ]
- Cilia- and flagella-associated protein 91 (76 kDa, Protein from Tetrahymena thermophila)
- Flagellar associated protein (42 kDa, Protein from Tetrahymena thermophila)
- Flagella associated protein (114 kDa, Protein from Tetrahymena thermophila)
- Coiled-coil protein, putative (60 kDa, Protein from Tetrahymena thermophila)
- Growth-arrest-specific microtubule-binding protein (55 kDa, Protein from Tetrahymena thermophila)
- Duf4201 domain-containing protein (94 kDa, Protein from Tetrahymena thermophila)
- Coiled-coil protein, putative (105 kDa, Protein from Tetrahymena thermophila)
- Cfap20 (22 kDa, Protein from Tetrahymena thermophila)
- Baseplate of nexin-dynein regulatory complex from tetrahymena thermophila (Cellular component from Tetrahymena thermophila)
- Growth-arrest-specific microtubule-binding protein (56 kDa, Protein from Tetrahymena thermophila)
- Dynein regulatory complex protein 1/2 n-terminal domain-containing protein (98 kDa, Protein from Tetrahymena thermophila)
Linker domain of Nexin-dynein regulatory complex from Tetrahymena thermophila
Resolution: 7.4 Å
EM Method: Single-particle
Fitted PDBs: 8th8
Q-score: 0.087
Ghanaeian A, Majhi S, McCafferty CL, Nami B, Black CS, Yang SK, Legal T, Papoulas O, Janowska M, Valente-Paterno M, Marcotte EM, Wloga D, Bui KH
Nat Commun (2023) 14 pp. 5741-5741 [ Pubmed: 37714832 DOI: doi:10.1038/s41467-023-41480-7 ]
- Kinase domain protein (39 kDa, Protein from Tetrahymena thermophila)
- Aaa family atpase cdc48 subfamily protein (101 kDa, Protein from Tetrahymena thermophila)
- Lrrc48 protein (68 kDa, Protein from Tetrahymena thermophila)
- Coiled-coil domain-containing protein 153 (22 kDa, Protein from Tetrahymena thermophila)
- Dynein regulatory complex protein 10 (51 kDa, Protein from Tetrahymena thermophila)
- Linker domain of nexin-dynein regulatory complex from tetrahymena thermophila (Cell from Tetrahymena thermophila)
- Duf4201 domain-containing protein (94 kDa, Protein from Tetrahymena thermophila)
- Dynein regulatory complex protein 9 (44 kDa, Protein from Tetrahymena thermophila)
- Coiled-coil lobo-like protein, putative (101 kDa, Protein from Tetrahymena thermophila)
- Ef-hand calcium-binding domain protein (22 kDa, Protein from Tetrahymena thermophila)
- Calmodulin 7-2 (23 kDa, Protein from Tetrahymena thermophila)
- Coiled-coil protein, putative (60 kDa, Protein from Tetrahymena thermophila)
- Growth-arrest-specific microtubule-binding protein (55 kDa, Protein from Tetrahymena thermophila)
- Flagellar associated protein (52 kDa, Protein from Tetrahymena thermophila)
- Growth-arrest-specific microtubule-binding protein (56 kDa, Protein from Tetrahymena thermophila)
- Dynein regulatory complex protein 1/2 n-terminal domain-containing protein (98 kDa, Protein from Tetrahymena thermophila)