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Human RAD52 open ring - ssDNA complex
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8rjw
Q-score: 0.512
Liang CC, Greenhough LA, Masino L, Maslen S, Bajrami I, Tuppi M, Skehel M, Taylor IA, West SC
Nature (2024) 629 pp. 697-703 [ DOI: doi:10.1038/s41586-024-07347-7 Pubmed: 38658755 ]
- Open ring conformation of human rad52 in complex with ssdna (Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Ssdna (6 kDa, DNA from Homo sapiens)
- Dna repair protein rad52 homolog (46 kDa, Protein from Homo sapiens)
Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) complex, 3.4 A resolution
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ouy
Q-score: 0.523
Greenhough LA, Liang CC, Belan O, Kunzelmann S, Maslen S, Rodrigo-Brenni MC, Anand R, Skehel M, Boulton SJ, West SC
Nature (2023) 619 pp. 650-657 [ DOI: doi:10.1038/s41586-023-06179-1 Pubmed: 37344587 ]
- Rad51b-rad51c-rad51d-xrcc2 (bcdx2) (Complex from Homo sapiens)
- Dna repair protein rad51 homolog 2 (38 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dna repair protein xrcc2 (31 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna repair protein rad51 homolog 3 (42 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Dna repair protein rad51 homolog 4 (35 kDa, Protein from Homo sapiens)
Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) complex, 2.2 A resolution
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8ouz
Q-score: 0.625
Greenhough LA, Liang CC, Belan O, Kunzelmann S, Maslen S, Rodrigo-Brenni MC, Anand R, Skehel M, Boulton SJ, West SC
Nature (2023) 619 pp. 650-657 [ DOI: doi:10.1038/s41586-023-06179-1 Pubmed: 37344587 ]
- Dna repair protein xrcc2 (31 kDa, Protein from Homo sapiens)
- Rad51b-rad51c-rad51d-xrcc2 (bcdx2) (Complex from Homo sapiens)
- Dna repair protein rad51 homolog 2 (38 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna repair protein rad51 homolog 3 (42 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Dna repair protein rad51 homolog 4 (35 kDa, Protein from Homo sapiens)
Polymerase module of CPF in complex with Mpe1 and a pre-cleaved CYC1 RNA
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7zgp
Q-score: 0.624
Rodriguez-Molina JB, O'Reilly FJ, Fagarasan H, Sheekey E, Maslen S, Skehel JM, Rappsilber J, Passmore LA
Mol Cell (2022) 82 pp. 2490- [ DOI: doi:10.1016/j.molcel.2022.04.021 Pubmed: 35584695 ]
- Pre-cleaved cyc1 (13 kDa, RNA from Saccharomyces cerevisiae)
- Mpe1 isoform 1 (49 kDa, Protein from Saccharomyces cerevisiae)
- Protein cft1 (153 kDa, Protein from Saccharomyces cerevisiae)
- Polymerase module-mpe1-rna (Complex from Saccharomyces cerevisiae)
- Polyadenylation factor subunit 2 (53 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Mrna 3'-end-processing protein yth1 (24 kDa, Protein from Saccharomyces cerevisiae)
Polymerase module of yeast CPF in complex with Mpe1, the yPIM of Cft2 and the pre-cleaved CYC1 RNA
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7zgr
Q-score: 0.61
Rodriguez-Molina JB, O'Reilly FJ, Fagarasan H, Sheekey E, Maslen S, Skehel JM, Rappsilber J, Passmore LA
Mol Cell (2022) 82 pp. 2490- [ DOI: doi:10.1016/j.molcel.2022.04.021 Pubmed: 35584695 ]
- Cleavage factor two protein 2 (80 kDa, Protein from Saccharomyces cerevisiae)
- Pre-cleaved cyc1 (13 kDa, RNA from Saccharomyces cerevisiae)
- Mpe1 isoform 1 (49 kDa, Protein from Saccharomyces cerevisiae)
- Protein cft1 (153 kDa, Protein from Saccharomyces cerevisiae)
- Polyadenylation factor subunit 2 (53 kDa, Protein from Saccharomyces cerevisiae)
- Polymerase module-mpe1-ypim-rna (Complex from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Mrna 3'-end-processing protein yth1 (24 kDa, Protein from Saccharomyces cerevisiae)
Volume 1 for truncated dimeric Cytohesin-3 (Grp1; amino acids 14-399)
Resolution: 53.0 Å
EM Method: Single-particle
Fitted PDBs: 6u3e
Q-score: 0.043
Das S, Malaby AW, Nawrotek A, Zhang W, Zeghouf M, Maslen S, Skehel M, Chakravarthy S, Irving TC, Bilsel O, Cherfils J, Lambright DG
Structure (2019) 27 pp. 1782- [ Pubmed: 31601460 DOI: doi:10.1016/j.str.2019.09.007 ]
Resolution: 53.0 Å
EM Method: Single-particle
Fitted PDBs: 6u3g
Q-score: 0.048
Das S, Malaby AW, Nawrotek A, Zhang W, Zeghouf M, Maslen S, Skehel M, Chakravarthy S, Irving TC, Bilsel O, Cherfils J, Lambright DG
Structure (2019) 27 pp. 1782- [ Pubmed: 31601460 DOI: doi:10.1016/j.str.2019.09.007 ]