Ligand clusters for UniProt code P28720

Ligand clusters for P28720: Queuine tRNA-ribosyltransferase from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)

		Top 6 (of 32) ligand clusters Cluster 1. 90 ligand types 161 ligands Cluster 2. 3 ligand types 4 ligands Cluster 3. 6 ligand types 27 ligands Cluster 4. 6 ligand types 51 ligands Cluster 5. 3 ligand types 78 ligands Cluster 6. 3 ligand types 6 ligands
Representative protein: 1q2rA

Structures

PDB		Schematic diagram
1q2rA
2qzrA
3bl3A
2z1xA
4e2vA
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Cluster 1 contains 90 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: PRF × 6 7-Deaza-7-Aminomethyl-Guanine PDB codes: 1efz(A), 1ozq(A), 1p0e(A), 1pxg(A), 2nqz(A), 2z1x(A).
		2. Ligand: GUN × 1 Guanine PDB code: 2pot(A).
		3. Ligand: GOL × 17 glycerin Glycerol PDB codes: 2nqz(A), 2oko(A), 2pot(A), 2pwv(A), 2qii(A), 2z1w(A), 2z1x(A), 4gd0(A), 4h6e(A), 4ipp(A), 4q8m(A), 4q8n(A), 5i07(A), 5jsw(A), 5lpt(A), 6ygv(A).
		4. Ligand: AMH × 1 tranexamic acid Trans-4-Aminomethylcyclohexane-1-Carboxylic acid PDB code: 5v3c(A).
_Zn		5. Metal: _ZN × 1 PDB code: 4dy1(A).
		6. Ligand: PQ0 × 3 2-Amino-4-Oxo-4,7-Dihydro-3h-Pyrrolo[2,3-D]pyrimidine- 5-Carbonitrile PDB codes: 1p0b(A), 2pwv(A), 2qii(A).
		7. Ligand: 9DG × 1 9-Deazaguanine PDB code: 1q2r(A).
		8. Ligand: AQO × 1 2-Aminoquinazolin-4(3h)-One PDB code: 1s39(A).
		9. Ligand: DPZ × 1 3,5-Diaminophthalhydrazide PDB code: 1f3e(A).
		10. Ligand: APZ × 1 4-Aminophthalhydrazide PDB code: 1enu(A).
		11. Ligand: APQ × 1 2,6-Diamino-8-Propylsulfanylmethyl-3h-Quinazoline-4-One PDB code: 1k4h(A).
		12. Ligand: NE8 × 1 6-Amino-4-(2-Phenylethyl)-1,7-Dihydro-8h-Imidazo[4,5- G]quinazolin-8-One PDB code: 1y5v(A).
		13. Ligand: BDI × 2 2-Butyl-5,6-Dihydro-1h-Imidazo[4,5-D]pyridazine-4,7- Dione PDB codes: 1n2v(A), 2z1w(A).
		14. Ligand: MAQ × 1 2-Amino-8-Methylquinazolin-4(3h)-One PDB code: 1s38(A).
		15. Ligand: AIQ × 2 2,6-Diamino-8-(1h-Imidazol-2-Ylsulfanylmethyl)-3h- Quinazoline-4-One PDB codes: 1k4g(A), 1q63(A).
		16. Ligand: BHB × 1 2,6-Diamino-8-(2-Dimethylaminoethylsulfanylmethyl)-3h- Quinazolin-4-One PDB code: 1q65(A).
		17. Ligand: NEZ × 1 6-Amino-4-[2-(4-Methylphenyl)ethyl]-1,7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One PDB code: 1y5w(A).
		18. Ligand: E89 × 1 6-Amino-4-[2-(4-Methoxyphenyl)ethyl]-1,7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One PDB code: 1y5x(A).
		19. Ligand: KMB × 1 2-Amino-6-Aminomethyl-8-Phenylsulfanylmethyl-3h- Quinazolin-4-One PDB code: 1q66(A).
		20. Ligand: S79 × 1 6-Amino-2-[(1-Naphthylmethyl)amino]-3,7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One PDB code: 2qzr(A).
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Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3rr4(A), 5i07(A).
		2. Ligand: 726 × 1 6-Azanyl-2-(Methylamino)-4-[2-[(2~{r},3~{r},4~{s}, 5~{r},6~{s})-3,4,5,6-Tetramethoxyoxan-2- Yl]ethyl]-1,7- Dihydroimidazo[4,5-G]quinazolin-8-One PDB code: 5lpt(A).
		3. Ligand: 72C × 1 4-[2-[(3~{a}~{r},4~{r},6~{r},6~{a}~{r})-4-Methoxy-2,2- Dimethyl-3~{a},4,6,6~{a}-Tetrahydrofuro[3,4- D][1, 3]dioxol-6-Yl]ethyl]-6-Azanyl-2-(Methylamino)-1,7- Dihydroimidazo[4,5-G]quinazolin-8-One PDB code: 5lpq(A).

Cluster 3 contains 6 ligand types

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Ligand		Description
		1. Ligand: GOL × 19 glycerin Glycerol PDB codes: 4ipp(A), 4lbu(A), 4puj(A), 4q4r(A), 4q4s(A), 4q8o(A), 4q8t(A), 4q8u(A), 4q8w(A), 5egr(A), 5i00(A), 5j9n(A), 5jsv(A), 5jsw(A), 5jt5(A), 5jxq(A), 6ygk(A), 6ygo(A), 6ygv(A).
		2. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 6rkq(A).
		3. Ligand: PGE × 4 Triethylene glycol PDB codes: 5n6f(A), 5uti(A), 5v3c(A), 6fso(A).
		4. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5jgo(A).
		5. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 5utj(A).
		6. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 5sw3(A).

Cluster 4 contains 6 ligand types

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Ligand		Description
		1. Ligand: GOL × 39 glycerin Glycerol PDB codes: 1pxg(A), 2nqz(A), 2nso(A), 2oko(A), 2pot(A), 2pwv(A), 2z1v(A), 2z1w(A), 2z1x(A), 3bll(A), 3c2y(A), 3gc5(A), 3unt(A), 3uvi(A), 4e2v(A), 4gcx(A), 4gd0(A), 4h6e(A), 4hqv(A), 4hsh(A), 4hvx(A), 4puj(A), 4q4q(A), 4q8m(A), 4q8n(A), 4q8p(A), 4q8u(A), 5i03(A), 5jsw(A), 5lpo(A), 6h7c(A), 6yfx(A), 6ygp(A), 7apm(A).
		2. Ligand: DMS × 4 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 4htb(A), 4q4m(A), 5uti(A), 5v3c(A).
		3. Ligand: EDO × 5 1,2-Ethanediol PDB codes: 5egr(A), 5i00(A), 5i07(A), 5jsw(A), 5lps(A).
		4. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 6fso(A).
		5. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 5lpo(A).
		6. Ligand: PGE × 1 Triethylene glycol PDB code: 5i06(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 74 glycerin Glycerol PDB codes: 1pxg(A), 1y5v(A), 1y5w(A), 2oko(A), 2pot(A), 2pwv(A), 2qii(A), 2qzr(A), 2z1v(A), 2z1w(A), 3c2y(A), 3eos(A), 3eou(A), 3gc5(A), 3sm0(A), 3tll(A), 3unt(A), 4e2v(A), 4gcx(A), 4gd0(A), 4gg9(A), 4h6e(A), 4h7z(A), 4hqv(A), 4ipp(A), 4l56(A), 4lbu(A), 4leq(A), 4puj(A), 4puk(A), 4pum(A), 4q4o(A), 4q4q(A), 4q4r(A), 4q4s(A), 4q8m(A), 4q8n(A), 4q8o(A), 4q8p(A), 4q8t(A), 4q8u(A), 4q8w(A), 5egr(A), 5i00(A), 5i06(A), 5i07(A), 5i09(A), 5j9m(A), 5j9n(A), 5j9o(A), 5jgm(A), 5jgo(A), 5jsv(A), 5jsw(A), 5jt5(A), 5jt6(A), 5jt7(A), 5jxq(A), 6fmn(A), 6fpu(A), 6h7c(A), 6yfw(A), 6ygk(A), 6ygl(A), 6ygo(A), 6ygp(A), 6ygs(A), 6ygv(A), 6ygw(A), 6yh2(A), 6yhd(A), 6yry(A), 7apl(A), 7apm(A).
		2. Ligand: PEG × 2 Di(hydroxyethyl)ether PDB codes: 5sw3(A), 5v3c(A).
		3. Ligand: PG4 × 2 Tetraethylene glycol PDB codes: 5uti(A), 6fso(A).

Cluster 6 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 2oko(A), 2z1w(A), 3c2y(A).
		2. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 3uvi(A).
		3. Ligand: F63 × 1 N-Methyl-1-[5-(Pyridin-3-Yloxy)furan-2-Yl]methanamine PDB code: 6fso(A).