Ligand clusters for UniProt code P16442

Ligand clusters for P16442: Histo-blood group ABO system transferase from Homo sapiens

		Top 6 (of 31) ligand clusters Cluster 1. 43 ligand types 300 ligands Cluster 2. 7 ligand types 26 ligands Cluster 3. 3 ligand types 20 ligands Cluster 4. 3 ligand types 17 ligands Cluster 5. 2 ligand types 4 ligands Cluster 6. 2 ligand types 2 ligands
Representative protein: 3v0qA

Structures

PDB		Schematic diagram
3v0qA
3u0yA
2rj7A
2y7aA
3sxaA
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Cluster 1 contains 43 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: UDP × 17 Uridine-5'-Diphosphate PDB codes: 1lzi(A), 1lzj(A), 1r7y(A), 1r80(A), 1wt1(A), 1wt2(A), 1wt3(A), 1zi5(A), 1zj2(A), 1zjo(A), 2a8u(A), 2a8w(A), 2rix(A), 2rj1(A), 2rj4(A), 2rj8(A), 2rj9(A).
		2. Ligand: GDU × 1 Galactose-Uridine-5'-Diphosphate PDB code: 1r82(A).
		3. Ligand: UD2 × 1 Uridine-Diphosphate-N-Acetylgalactosamine PDB code: 1r81(A).
_Mn		4. Metal: _MN × 81 PDB codes: 1lzi(A), 1lzj(A), 1r7y(A), 1r80(A), 1zi1(A), 1zj2(A), 1zjo(A), 1zjp(A), 2a8u(A), 2a8w(A), 2o1h(A), 2rix(A), 2rj0(A), 2rj1(A), 2rj4(A), 2rj5(A), 2rj7(A), 2rj8(A), 2rj9(A), 2y7a(A), 3i0g(A), 3ioi(A), 3ioj(A), 3sx3(A), 3sx5(A), 3sx7(A), 3sx8(A), 3sxa(A), 3sxb(A), 3sxc(A), 3sxd(A), 3sxe(A), 3sxg(A), 3u0y(A), 3v0l(A), 3v0m(A), 3v0n(A), 3v0o(A), 3v0p(A), 3v0q(A), 3zgf(A), 3zgg(A), 4c2s(A), 4frb(A), 4frd(A), 4frh(A), 4frl(A), 4fro(A), 4frp(A), 4frq(A), 4gbp(A), 4kc1(A), 4kc2(A), 4kc4(A), 4y63(A), 5bxc(A), 5c1g(A), 5c1h(A), 5c1l(A), 5c36(A), 5c38(A), 5c3a(A), 5c3b(A), 5c3d(A), 5c47(A), 5c48(A), 5c49(A), 5c4b(A), 5c4c(A), 5c4d(A), 5c4e(A), 5c4f(A), 5c8r(A), 5m79(A), 5m7a(A), 5m7b(A), 5m7c(A), 5m7d(A), 6gx0(A), 6gx1(A), 6gx2(A).
		5. Ligand: GOL × 29 glycerin Glycerol PDB codes: 2rit(A), 2rix(A), 2riz(A), 2rj0(A), 2rj1(A), 2rj5(A), 3ioh(A), 3ioj(A), 3sx3(A), 3sx7(A), 3sxa(A), 3u0x(A), 3u0y(A), 3v0n(A), 3v0q(A), 3zgg(A), 5m79(A), 5m7b(A), 5m7d(A), 6bji(A), 6bjk(A), 6bjl(A), 6bjm(A), 6gwy(A), 6gx2(A),
		6. Ligand: GAL × 26 galactose Beta-D-Galactopyranose PDB codes: 1zhj(A), 1ziz(A), 3sx3(A), 3sx5(A), 3sx7(A), 3sx8(A), 3sxa(A), 3sxb(A), 3sxc(A), 3sxd(A), 3sxe(A), 3sxg(A), 4fqw(A), 4fra(A), 4frb(A), 4frd(A), 4fre(A), 4frh(A), 4frl(A), 4frm(A), 4fro(A), 4frp(A), 4frq(A), 4gbp(A),
		7. Ligand: BHE × 4 Octyl 2-O-(6-Deoxy-Alpha-L-Galactopyranosyl)-Beta-D- Galactopyranoside PDB codes: 2riy(A), 2rj1(A), 2rj6(A), 2rj8(A).
		8. Ligand: AD7 × 2 Octyl 3-Amino-3-Deoxy-2-O-(2,6-Dideoxy-Alpha-L-Lyxo- Hexopyranosyl)-Beta-D-Galactopyranoside PDB codes: 2rj4(A), 2rj9(A).
		9. Ligand: DR4 × 1 Methyl 9-(Beta-D-Talopyranosyloxy)nonanoate PDB code: 1zjo(A).
		10. Ligand: UDP × 42 Uridine-5'-Diphosphate PDB codes: 1zjp(A), 2o1h(A), 2rj0(A), 2rj5(A), 2y7a(A), 3i0d(A), 3i0i(X), 3i0k(A), 3ioj(A), 3sx3(A), 3sx5(A), 3sx7(A), 3sx8(A), 3sxa(A), 3sxb(A), 3sxc(A), 3sxd(A), 3sxe(A), 3sxg(A), 3v0q(A), 3zgf(A), 4c2s(A), 4fqw(A), 4fra(A), 4frb(A), 4frd(A), 4fre(A), 4frh(A), 4frl(A), 4frm(A), 4fro(A), 4frp(A), 4frq(A), 4gbp(A), 5bxc(A), 5c36(A), 5c49(A), 5c4e(A), 5m7b(A), 5m7c(A), 6gx1(A), 6gx2(A).
		11. Ligand: DA8 × 15 Octyl 3-Deoxy-2-O-(6-Deoxy-Alpha-L-Galactopyranosyl)- Beta-D-Xylo-Hexopyranoside PDB codes: 2rj7(A), 5bxc(A), 5c1g(A), 5c1h(A), 5c1l(A), 5c36(A), 5c38(A), 5c3b(A), 5c47(A), 5c48(A), 5c4b(A), 5c4c(A), 5c4d(A), 5c4f(A), 5c8r(A).
		12. Ligand: BHE × 10 Octyl 2-O-(6-Deoxy-Alpha-L-Galactopyranosyl)-Beta-D- Galactopyranoside PDB codes: 3v0m(A), 3v0o(A), 3v0p(A), 3v0q(A), 4kc1(A), 4kc2(A), 4kc4(A), 4y62(A), 4y63(A), 4y64(A).
		13. Ligand: BHG-FUC × 9 BHG=Hexyl beta-D-Galactopyranoside, FUC=Alpha-L-Fucopyranose. PDB codes: 1lzi(A), 1lzj(A), 1wt1(A), 1wt3(A), 3i0e(A), 3i0g(A), 3i0j(A), 3i0k(A), 3i0l(A).
		14. Ligand: GDU × 6 Galactose-Uridine-5'-Diphosphate PDB codes: 2rj7(A), 5c1g(A), 5c1h(A), 5c1l(A), 5m7d(A), 6gx0(A).
		15. Ligand: URM × 6 (((2s,3r,4s,5r,6r)-3,4,5-Trihydroxy-6-(Hydroxymethyl) tetrahydro-2h-Pyran-2- Yl)methyl)phosphonic (((2r,3s, 4r,5r)-5-(2,4-Dioxo-3,4-Dihydropyrimidin-1(2h)-Yl)-3, 4- Dihydroxytetrahydrofuran-2-Yl)methyl phosphoric) anhydride PDB codes: 5c38(A), 5c3a(A), 5c3b(A), 5c3d(A), 5c47(A), 5c48(A).
		16. Ligand: AIG-FUC × 5 AIG=Hexyl 3-Amino-3-Deoxy-Beta-D-Galactopyranoside, FUC=Alpha-L-Fucopyranose. PDB codes: 1r7v(A), 1r7x(A), 1r7y(A), 1r80(A), 1r81(A).
		17. Ligand: UPG × 5 Uridine-5'-Diphosphate-Glucose PDB codes: 5c4b(A), 5c4c(A), 5c4d(A), 5c4f(A), 5c8r(A).
		18. Ligand: DLG-FUC × 4 DLG=Hexyl 3-Deoxy-Beta-D-Galactopyranoside, FUC=Alpha-L-Fucopyranose. PDB codes: 1r7t(A), 1r7u(A), 1wt2(A), 4c2s(A).
		19. Ligand: NAG-GAL-FUC × 4 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose, FUC=Alpha-L-Fucopyranose. PDB codes: 1zi4(A), 1zi5(A), 1zj2(A), 1zj3(A).
		20. Ligand: 4GW × 3 5-(5-Formylthiophen-2-Yl)uridine 5'-(Trihydrogen diphosphate) PDB codes: 3v0n(A), 3v0o(A), 3v0p(A).
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Cluster 2 contains 7 ligand types

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Ligand		Description
		1. Ligand: GLY × 1 glycine PDB code: 4fro(A).
		2. Ligand: PEG × 13 Di(hydroxyethyl)ether PDB codes: 3sx5(A), 3sx8(A), 3sxb(A), 3sxd(A), 3sxg(A), 4fra(A), 4fre(A), 4frh(A), 4frq(A), 5c8r(A), 5m7c(A), 6gx0(A), 6gx1(A).
		3. Ligand: PG0 × 6 2-(2-Methoxyethoxy)ethanol PDB codes: 5c1g(A), 5c3d(A), 5c47(A), 5c4c(A), 5c4d(A), 5c4e(A).
		4. Ligand: PGE × 3 Triethylene glycol PDB codes: 5c1h(A), 5c49(A), 5c4b(A).
		5. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6gwz(A).
		6. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 4fqw(A).
		7. Ligand: SO4 × 1 Sulfate ion PDB code: 3u0x(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
_Hg		1. Metal: _HG × 17 PDB codes: 1lz0(A), 1zi1(A), 1zjo(A), 1zjp(A), 2a8w(A), 2i7b(A), 2o1g(A), 2o1h(A), 2pgv(A), 5cmf(X), 5cmg(X), 5cmh(A), 5cmj(A), 5cql(X), 5cqm(X), 5cqo(A), 5cqp(A).
		2. Ligand: UDP × 2 Uridine-5'-Diphosphate PDB codes: 3i0g(A), 3i0l(A).
		3. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6gx2(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3u0x(A).
_Hg		2. Metal: _HG × 15 PDB codes: 1wsz(A), 1wt0(A), 1xz6(A), 1zi1(A), 1zjo(A), 1zjp(A), 2a8w(A), 2o1g(A), 2o1h(A), 2pgv(A), 5cmh(A), 5cql(X), 5cqm(X), 5cqo(A), 5cqp(A).
		3. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 3sxc(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6gwy(A).
		2. Ligand: PEG × 3 Di(hydroxyethyl)ether PDB codes: 3sx3(A), 3sx7(A), 3sxa(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3u0x(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 3u0x(A).