Ligand clusters for UniProt code P01889

Ligand clusters for P01889: HLA class I histocompatibility antigen, B alpha chain from Homo sapiens

		Top 6 (of 41) ligand clusters Cluster 1. 168 ligand types 312 ligands Cluster 2. 17 ligand types 103 ligands Cluster 3. 6 ligand types 32 ligands Cluster 4. 5 ligand types 9 ligands Cluster 5. 5 ligand types 6 ligands Cluster 6. 4 ligand types 9 ligands
Representative protein: 6uj7A

Structures

PDB		Schematic diagram
6uj7A
4g8gA
6pylA
5wmqA
3x14A
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Cluster 1 contains 168 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: GOL × 28 glycerin Glycerol PDB codes: 1of2(A), 1ogt(A), 1uxs(A), 1uxw(A), 1xr8(A), 2a83(A), 3b3i(A), 3d18(A), 3l3d(A), 3l3i(A), 3lv3(A), 4u1h(A), 4u1k(A), 4u1l(A), 4u1m(A), 5def(A), 5ib2(A), 5t6y(A), 6bj8(A),
		2. Ligand: 1KX × 4 abacavir {(1s,4r)-4-[2-Amino-6-(Cyclopropylamino)-9h-Purin-9- Yl]cyclopent-2-En-1-Yl}methanol PDB codes: 3upr(A), 3vri(A), 3vrj(A), 5u98(A).
		3. Ligand: MET × 4 methionine PDB codes: 4qru(A), 4u1h(A), 4u1j(A), 4u1m(A).
		4. Ligand: LYS × 2 l-lysine PDB codes: 3spv(A), 4qru(A).
		5. Ligand: ACY × 1 acetic acid Acetic acid PDB code: 1n2r(A).
		6. Ligand: GLN × 1 l-glutamine PDB code: 3spv(A).
		7. Ligand: VAL × 1 valine PDB code: 3dx6(A).
		8. Ligand: EDO × 21 1,2-Ethanediol PDB codes: 4u1h(A), 4u1j(A), 4u1l(A), 4u1m(A), 4u1n(A), 4u1s(A), 6bj3(A), 6vmx(A).
		9. Ligand: LEU × 10 PDB codes: 2a83(A), 3czf(A), 3d18(A), 3kpm(A), 3spv(A), 4qrs(A), 4u1h(A), 4u1j(A), 5deg(A).
		10. Ligand: LEU-SER-SER-PRO-VAL-THR-LYS-SER-PHE × 7 PDB codes: 2rfx(A), 3vh8(A), 3wuw(A), 3x11(A), 3x12(A), 5b38(A), 5b39(A).
		11. Ligand: ACT × 5 Acetate ion PDB codes: 3dx6(A), 3dx7(A), 5t6y(A), 6mtl(A).
		12. Ligand: ARG-ARG-LYS-TRP-ARG-ARG-TRP-HIS-LEU × 5 PDB codes: 1of2(A), 5def(A), 5ib1(A), 5ib2(A), 5ib5(A).
		13. Ligand: PEG × 5 Di(hydroxyethyl)ether PDB codes: 3kww(A), 6uj8(A), 6uj9(A),
		14. Ligand: PHE-LEU-ARG-GLY-ARG-ALA-TYR-GLY-LEU × 5 PDB codes: 1m05(A), 1mi5(A), 3ffc(A), 3sjv(A), 3x14(A).
		15. Ligand: ALA-ALA-ALA-LYS-LYS-LYS-TYR-CYS-LEU × 4 PDB codes: 6p23(A), 6p27(A), 6p2c(A), 6p2s(A).
		16. Ligand: GLU-GLU-TYR-LEU-GLN-ALA-PHE-THR-TYR × 4 PDB codes: 3kpl(A), 3kpn(A), 3kpp(A), 3kps(A).
		17. Ligand: ILE-PRO-LEU-THR-GLU-GLU-ALA-GLU-LEU × 4 PDB codes: 5xos(A), 5xot(A), 6bj2(A), 6bj3(A).
		18. Ligand: PHE-GLU-ASP-LEU-ARG-VAL-LEU-SER-PHE × 4 PDB codes: 6mt3(A), 6mt6(A), 6mtl(A), 6mtm(A).
		19. Ligand: ARG × 3 PDB codes: 3skm(A), 3sko(A), 4qru(A).
		20. Ligand: ARG-ARG × 3 PDB codes: 1ogt(A), 5deg(A), 5ib3(A).
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Cluster 2 contains 17 ligand types

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Ligand		Description
		1. Ligand: GOL × 43 glycerin Glycerol PDB codes: 1k5n(A), 1of2(A), 1ogt(A), 1uxs(A), 1uxw(A), 1w0v(A), 1w0w(A), 1xr8(A), 1xr9(A), 2a83(A), 3bp4(A), 3bp7(A), 3czf(A), 3dx7(A), 3l3i(A), 3l3k(A), 3lv3(A), 3vcl(A), 4g9d(A), 4jqx(A), 4u1m(A), 4u1n(A), 5def(A), 5deg(A), 5ib2(A), 5ib3(A), 5ib4(A), 5t6w(A), 5t6x(A), 5t6y(A), 5vz5(A), 5xot(A), 6bj8(A),
		2. Ligand: ACY × 4 acetic acid Acetic acid PDB codes: 2axf(A), 2axg(A), 3kww(A),
		3. Ligand: TRS × 2 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB codes: 3d18(A), 4g8i(A).
_Zn		4. Metal: _ZN × 1 PDB code: 7lgt(A).
		5. Ligand: EDO × 24 1,2-Ethanediol PDB codes: 4u1h(A), 4u1i(A), 4u1j(A), 4u1k(A), 4u1l(A), 4u1m(A), 4u1n(A), 4u1s(A),
		6. Ligand: PEG × 7 Di(hydroxyethyl)ether PDB codes: 3kpp(A), 3kww(A), 6uj8(A), 6uj9(A).
		7. Ligand: ACT × 6 Acetate ion PDB codes: 3dx6(A), 3dx7(A), 3l3g(A).
		8. Ligand: SO4 × 5 Sulfate ion PDB codes: 4g9f(A), 4u1i(A), 4u1l(A), 5vz5(A), 6uj9(A).
_Cu		9. Metal: _CU × 2 PDB codes: 5ib3(A), 5ib5(A).
_Ni		10. Metal: _NI × 2 PDB codes: 3vcl(A), 5ib4(A).
		11. Ligand: 1PE × 1 Pentaethylene glycol PDB code: 6uj8(A).
		12. Ligand: EPE × 1 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB code: 3c9n(A).
		13. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 3d18(A).
		14. Ligand: NHE × 1 2-[N-Cyclohexylamino]ethane sulfonic acid PDB code: 6uj9(A).
		15. Ligand: PGE × 1 Triethylene glycol PDB code: 6uj8(A).
_Cd		16. Metal: _CD × 1 PDB code: 3ffc(A).
_Na		17. Metal: _NA × 1 PDB code: 3ffc(A).

Cluster 3 contains 6 ligand types

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Ligand		Description
		1. Ligand: GOL × 13 glycerin Glycerol PDB codes: 2a83(A), 3b3i(A), 3bp4(A), 3d18(A), 3dx6(A), 3l3i(A), 3vcl(A), 5def(A), 5ib2(A), 5t6y(A), 5vz5(A), 5xot(A), 6bj8(A).
		2. Ligand: ACY × 3 acetic acid Acetic acid PDB codes: 2axf(A), 2axg(A), 3kww(A).
		3. Ligand: URE × 2 urea Urea PDB codes: 1xr8(A), 1xr9(A).
		4. Ligand: EDO × 7 1,2-Ethanediol PDB codes: 4u1h(A), 4u1i(A), 4u1j(A), 4u1m(A), 4u1n(A), 4u1s(A), 5ieh(A).
		5. Ligand: ACT × 6 Acetate ion PDB codes: 3dx7(A), 3l3g(A), 3l3j(A), 4jqv(A), 4jqx(A), 4qrs(A).
		6. Ligand: PO4 × 1 Phosphate ion PDB code: 6bj8(A).

Cluster 4 contains 5 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3b3i(A), 6bj8(A).
		2. Ligand: EDO × 3 1,2-Ethanediol PDB codes: 4u1m(A), 4u1s(A).
		3. Ligand: SO4 × 2 Sulfate ion PDB codes: 4g9f(A), 5vz5(A).
		4. Ligand: ACT × 1 Acetate ion PDB code: 3dx6(A).
		5. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 3kpp(A).

Cluster 5 contains 5 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3b3i(A).
		2. Ligand: SO4 × 2 Sulfate ion PDB codes: 5vz5(A), 6uj9(A).
		3. Ligand: ACT × 1 Acetate ion PDB code: 4jqx(A).
		4. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4u1h(A).
_Cd		5. Metal: _CD × 1 PDB code: 3ffc(A).

Cluster 6 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 1uxw(A), 3dx7(A), 3l3g(A), 3l3i(A).
		2. Ligand: ACY × 1 acetic acid Acetic acid PDB code: 1n2r(A).
		3. Ligand: ACT × 2 Acetate ion PDB codes: 3ln4(A), 4xxc(A).
		4. Ligand: SO4 × 2 Sulfate ion PDB codes: 5vz5(A), 6uj8(A).