loyal-squid
3D UNet Mouse Embryo Fixed
Task: 3D nucleus segmentation
Tags: 3D, nuclei, mouse embryo, fixed tissue, confocal microscopy, semantic segmentation, torchscript, ilastik, U-Net, plantseg, deepimagej, pytorch
Model Evaluation Platform alpha
This is a collection of AI models from the BioImage Model Zoo that have been applied to several datasets from the BIA. Here you can visualise the prediction of the models for different images.
noisy-fish
3D UNet Arabidopsis Ovules Nuclei
Task: 3D nucleus segmentation
Tags: 3D, nuclei, arabidopsis ovule, confocal microscopy, semantic segmentation, plantseg, U-Net, pytorch
affable-shark
Nuclei Segmentation Boundary Model
Task: 2D nucleus segmentation
Tags: 2D, nuclei, fluorescence microscopy, instance segmentation, U-Net
emotional-cricket
UNet3D Arabidopsis Apical Stem Cells
Task: 3D cell segmentation
Tags: 3D, cell membrane, arabidopsis ovule, confocal microscopy, semantic segmentation, plantseg, U-Net, pytorch, plant, ilastik
powerful-fish
3D UNet Mouse Embryo Live
Task: 3D cell segmentation
Tags: 3D, cell membrane, mouse embryo, live tissue, light sheet microscopy, semantic segmentation, torchscript, ilastik, U-Net, plantseg, deepimagej, pytorch, animal
passionate-t-rex
3D UNet Arabidopsis Ovules
Task: 3D cell segmentation
Tags: 3D, cell membrane, arabidopsis ovule, tissue, fluorescence microscopy, semantic segmentation, torchscript, ilastik, U-Net, plantseg, deepimagej, pytorch, plant
thoughtful-turtle
3D UNet Lateral Root Primordia Cells
Task: 3D cell segmentation
Tags: 3D, cell membrane, arabidopsis lateral root, tissue, light sheet microscopy, semantic segmentation, ilastik, U-Net, plantseg, pytorch, plant
pioneering-rhino
2D UNet Arabidopsis Ovules
Task: 2D cell segmentation
Tags: 2D, cell membrane, arabidopsis ovule, tissue, fluorescence microscopy, semantic segmentation, ilastik, U-Net, plantseg, pytorch, plant
laid-back-lobster
2D UNet Arabidopsis Apical Stem Cells
Task: 2D cell segmentation
Tags: 2D, cell membrane, arabidopsis stem cells, fluorescence microscopy, semantic segmentation, plantseg, U-Net, pytorch, plant, ilastik, tissue
powerful-chipmunk
Covid IF Cell Segmentation Boundary Model
Task: 2D cell segmentation
Tags: 2D, cells, immunofluorescence, transmission light microscopy, instance segmentation, COVID-19, U-Net
hiding-tiger
Live Cell Segmentation Boundary Model
Task: 2D cell segmentation
Tags: 2D, cells, label free, transmission light microscopy, instance segmentation
noisy-hedgehog
2D UNet for label-free prediction of mCherry-H2B
Task: prediction of H2B localisation
Tags: 2D, cells, label free, transmission light microscopy, fluorescence, U-Net
dynamic-t-rex
CHO cells nuclei virtual staining - brightfield - Pix2Pix
Task: prediction of cell membrane localisation
Tags: 2D, cells, in silico labeling, transmission light microscopy, fluorescence, conditional gan, cyclegan, zerocostdl4mic, deepimagej, pytorch, actin, dapi, nuclei
charismatic-whale
DeepBacs Segmentation Boundary Model
Task: 2D cell segmentation
Tags: 2D, instance segmentation, U-Net, zerocostdl4mic, deepbacs, pytorch
frank-water-buffalo
UniFMIR Denoise On Planaria
Task: denoising
Tags: 2D, image restoration, fluorescence microscopy, pytorch