Ligand clusters for UniProt code P00558

Ligand clusters for P00558: Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3

		5 ligand clusters Cluster 1. 20 ligand types 65 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 2 ligand types 2 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand
Representative protein: 4o33A

Structures

PDB		Schematic diagram
4o33A
2y3iA
2x15A
2wzdA
3zozA
		more ...

Cluster 1 contains 20 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
_Mg		1. Metal: _MG × 16 PDB codes: 2wzb(A), 2wzc(A), 2wzd(A), 2x13(A), 2x14(A), 2x15(A), 2y3i(A), 2ybe(A), 3c3c(A), 3zoz(A), 4axx(A), 5m1r(A), 5m3u(A), 5m6z(A), 5mxm(A).
		2. Ligand: TZN × 1 terazosin [4-(4-Amino-6,7-Dimethoxyquinazolin-2-Yl)piperazin-1- Yl][(2r)-Tetrahydrofuran-2-Yl]methanone PDB code: 4o33(A).
		3. Ligand: 3PG × 15 3-Phosphoglyceric acid PDB codes: 2x13(A), 2x14(A), 2x15(A), 2xe6(A), 2xe7(A), 2xe8(A), 2y3i(A), 3c39(A), 3c3a(A), 3c3c(A), 4o33(A), 5m3u(A), 5m6z(A), 5mxm(A), 5np8(A).
		4. Ligand: ADP × 10 Adenosine-5'-Diphosphate PDB codes: 2x13(A), 2x15(A), 2xe7(A), 2zgv(A), 4axx(A), 5m1r(A), 5m3u(A), 5m6z(A), 5mxm(A), 5o7d(A).
_Cl		5. Metal: _CL × 6 PDB codes: 2wzb(A), 2wzc(A), 2wzd(A), 2y3i(A), 2ybe(A), 4axx(A).
		6. Ligand: ACP × 2 Phosphomethylphosphonic acid adenylate ester PDB codes: 2x14(A), 2xe8(A).
		7. Ligand: PO4 × 2 Phosphate ion PDB codes: 3c3b(A), 5m6z(A).
		8. Ligand: 3PG-BEF × 1 3PG=3-Phosphoglyceric acid, BEF=Beryllium trifluoride ion. PDB code: 4axx(A).
		9. Ligand: 93T × 1 3-[2-(4-Bromophenyl)-5,7-Dimethyl-Pyrazolo[1,5- A]pyrimidin-6-Yl]propanoic acid PDB code: 5np8(A).
		10. Ligand: ADP-3PG-MGF × 1 MGF=Trifluoromagnesate, ADP=Adenosine-5'-Diphosphate, 3PG=3-Phosphoglyceric acid. PDB code: 2wzb(A).
		11. Ligand: AF3-ADP-3PG × 1 AF3=Aluminum fluoride, ADP=Adenosine-5'-Diphosphate, 3PG=3-Phosphoglyceric acid. PDB code: 2wzd(A).
		12. Ligand: ALF × 1 Tetrafluoroaluminate ion PDB code: 2y3i(A).
		13. Ligand: ALF-ADP-3PG × 1 ADP=Adenosine-5'-Diphosphate, 3PG=3-Phosphoglyceric acid, ALF=Tetrafluoroaluminate ion. PDB code: 2wzc(A).
		14. Ligand: ATP × 1 Adenosine-5'-Triphosphate PDB code: 2x15(A).
		15. Ligand: CDP × 1 Cytidine-5'-Diphosphate PDB code: 3c3c(A).
		16. Ligand: LA8 × 1 L-Adenosine-5'-Diphosphate PDB code: 2y3i(A).
		17. Ligand: LA8-ALF-3PG × 1 LA8=L-Adenosine-5'-Diphosphate, ALF=Tetrafluoroaluminate ion, 3PG=3-Phosphoglyceric acid. PDB code: 2ybe(A).
		18. Ligand: MGF-3PG-ADP × 1 ADP=Adenosine-5'-Diphosphate, MGF=Trifluoromagnesate, 3PG=3-Phosphoglyceric acid. PDB code: 3zoz(A).
		19. Ligand: X15 × 1 1,3-Bisphosphoglyceric acid PDB code: 2x15(A).
_Br		20. Metal: _BR × 1 PDB code: 3zoz(A).
+ more. Press for full list

Cluster 2 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: BTB × 1 2-[Bis-(2-Hydroxy-Ethyl)-Amino]-2-Hydroxymethyl- Propane-1,3-Diol PDB code: 5mxm(A).

Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
_Mg		1. Metal: _MG × 1 PDB code: 5m3u(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5np8(A).

Cluster 4 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5np8(A).

Cluster 5 contains 1 ligand type

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5np8(A).