Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research. We appreciate your responses prior to closing of the survey on Monday 17th June.
Cryo-EM structure of the Photosystem II - LHCII supercomplex from Chlorella ohadi
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 8bd3
Q-score: 0.574
Fadeeva M, Klaiman D, Caspy I, Nelson N
Cells (2023) 12 [ DOI: doi:10.3390/cells12151971 Pubmed: 37566050 ]
- Photosystem ii protein d1 (37 kDa, Protein from Chlorella ohadii)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chlorophyll a-b binding of lhcii (23 kDa, Protein from Chlorella ohadii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chloroplast oxygen-evolving enhancer protein 1 (25 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein l (4 kDa, Protein from Chlorella ohadii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
- Photosystem ii d2 protein (38 kDa, Protein from Chlorella ohadii)
- Water (18 Da, Ligand)
- Photosystem ii reaction center protein i (3 kDa, Protein from Chlorella ohadii)
- Chlorophyll a b-binding cp26 (27 kDa, Protein from Chlorella ohadii)
- Chlorophyll a b binding cp29 (25 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein j (3 kDa, Protein from Chlorella ohadii)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Chlorella ohadii)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Chlorophyll a-b binding of lhcii (23 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein k (4 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein t (3 kDa, Protein from Chlorella ohadii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Chlorella ohadii)
- Chloride ion (35 Da, Ligand)
- Photosystem ii cp47 reaction center protein (55 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein m (5 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein x (3 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein z (6 kDa, Protein from Chlorella ohadii)
- Chloroplast psby (3 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center w protein (6 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein h (7 kDa, Protein from Chlorella ohadii)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
- Chlorella ohadii photosystem ii (1 MDa, Complex from Chlorella ohadii)
- Chloroplast photosystem ii 10 kda protein (11 kDa, Protein from Chlorella ohadii)
- Multifunctional fusion protein (23 kDa, Protein from Chlorella ohadii)
- Chlorophyll a (893 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Cytochrome b559 subunit beta (4 kDa, Protein from Chlorella ohadii)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chloroplast oxygen-evolving enhancer protein 3 (15 kDa, Protein from Chlorella ohadii)
- Photosystem ii oxygen evolving enhancer 2 (20 kDa, Protein from Chlorella ohadii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Chlorella ohadii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Unstacked compact Dunaliella PSII
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 7pi0
Q-score: 0.623
Caspy I, Fadeeva M, Mazor Y, Nelson N
eLife (2023) 12 [ Pubmed: 36799903 DOI: doi:10.7554/eLife.81150 ]
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Psbw (4 kDa, Protein from Dunaliella salina)
- Diacyl glycerol (625 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Dunaliella salina photosystem ii complex (Complex from Dunaliella salina)
- Cp29 (21 kDa, Protein from Dunaliella salina)
- Sodium ion (22 Da, Ligand)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Dunaliella salina)
- Water (18 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Dunaliella salina)
- Lhcii m3 (24 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein i (3 kDa, Protein from Dunaliella salina)
- Psbo (25 kDa, Protein from Dunaliella salina)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Dunaliella salina)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Psbp (20 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein k (4 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein j (3 kDa, Protein from Dunaliella salina)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Dunaliella salina)
- Chloride ion (35 Da, Ligand)
- Psbu (3 kDa, Protein from Dunaliella salina)
- Psbm (3 kDa, Protein from Dunaliella salina)
- Cp26 (26 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit alpha (8 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit beta (3 kDa, Protein from Dunaliella salina)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Psbx (2 kDa, Protein from Dunaliella salina)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Sphingosine (299 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein h (7 kDa, Protein from Dunaliella salina)
- Pheophytin a (871 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii protein d1 (37 kDa, Protein from Dunaliella salina)
- Photosystem ii d2 protein (38 kDa, Protein from Dunaliella salina)
- Photosystem ii cp47 reaction center protein (53 kDa, Protein from Dunaliella salina)
- Lhcii m1 (23 kDa, Protein from Dunaliella salina)
- Beta-carotene (536 Da, Ligand)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem ii reaction center protein t (3 kDa, Protein from Dunaliella salina)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Unstacked stretched Dunaliella PSII
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 7pi5
Q-score: 0.542
Caspy I, Fadeeva M, Mazor Y, Nelson N
eLife (2023) 12 [ Pubmed: 36799903 DOI: doi:10.7554/eLife.81150 ]
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Dunaliella salina photosystem ii complex (Complex from Dunaliella salina)
- Photosystem ii cp47 reaction center protein (53 kDa, Protein from Dunaliella salina)
- Cp29 (21 kDa, Protein from Dunaliella salina)
- Sodium ion (22 Da, Ligand)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Dunaliella salina)
- Water (18 Da, Ligand)
- Hypothetical protein (2 kDa, Protein from Dunaliella salina)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Dunaliella salina)
- Lhcii m3 (24 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein i (3 kDa, Protein from Dunaliella salina)
- Psbo (25 kDa, Protein from Dunaliella salina)
- Psii 6.1 kda protein (4 kDa, Protein from Dunaliella salina)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Dunaliella salina)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Psbp (20 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein k (4 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein j (3 kDa, Protein from Dunaliella salina)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein m (3 kDa, Protein from Dunaliella salina)
- Chloride ion (35 Da, Ligand)
- Psbu (3 kDa, Protein from Dunaliella salina)
- Glycerol (92 Da, Ligand)
- Cp26 (26 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit alpha (8 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit beta (3 kDa, Protein from Dunaliella salina)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Sphingosine (299 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein h (7 kDa, Protein from Dunaliella salina)
- Pheophytin a (871 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii protein d1 (37 kDa, Protein from Dunaliella salina)
- Photosystem ii d2 protein (38 kDa, Protein from Dunaliella salina)
- Lhcii m1 (23 kDa, Protein from Dunaliella salina)
- Trimethyl-[(2~{r})-1-oxidanyl-1-oxidanylidene-4-[(2~{s})-2-[(1~{s})-1-oxidanyloctadecoxy]-3-[(1~{r})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium (773 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem ii reaction center protein t (3 kDa, Protein from Dunaliella salina)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Stacked compact Dunaliella PSII
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7pin
Q-score: 0.328
Caspy I, Fadeeva M, Mazor Y, Nelson N
eLife (2023) 12 [ Pubmed: 36799903 DOI: doi:10.7554/eLife.81150 ]
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Psbw (4 kDa, Protein from Dunaliella salina)
- Diacyl glycerol (625 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Ergosterol (396 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Dunaliella salina photosystem ii complex (Complex from Dunaliella salina)
- Photosystem ii cp47 reaction center protein (53 kDa, Protein from Dunaliella salina)
- Cp29 (21 kDa, Protein from Dunaliella salina)
- Sodium ion (22 Da, Ligand)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Dunaliella salina)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Dunaliella salina)
- Lhcii m3 (24 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein i (3 kDa, Protein from Dunaliella salina)
- Psbo (25 kDa, Protein from Dunaliella salina)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Dunaliella salina)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Psbp (20 kDa, Protein from Dunaliella salina)
- Psbj (3 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein k (4 kDa, Protein from Dunaliella salina)
- Tripalmitoylglycerol (807 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Dunaliella salina)
- Chloride ion (35 Da, Ligand)
- Psbu (3 kDa, Protein from Dunaliella salina)
- Glycerol (92 Da, Ligand)
- Psbm (3 kDa, Protein from Dunaliella salina)
- Cp26 (26 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit alpha (8 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit beta (3 kDa, Protein from Dunaliella salina)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Psbx (2 kDa, Protein from Dunaliella salina)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Sphingosine (299 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein h (7 kDa, Protein from Dunaliella salina)
- Pheophytin a (871 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii protein d1 (37 kDa, Protein from Dunaliella salina)
- Photosystem ii d2 protein (38 kDa, Protein from Dunaliella salina)
- Lhcii m1 (23 kDa, Protein from Dunaliella salina)
- Trimethyl-[(2~{r})-1-oxidanyl-1-oxidanylidene-4-[(2~{s})-2-[(1~{s})-1-oxidanyloctadecoxy]-3-[(1~{r})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium (773 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem ii reaction center protein t (3 kDa, Protein from Dunaliella salina)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Stacked stretched Dunaliella PSII
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7piw
Q-score: 0.236
Caspy I, Fadeeva M, Mazor Y, Nelson N
eLife (2023) 12 [ Pubmed: 36799903 DOI: doi:10.7554/eLife.81150 ]
- Photosystem ii reaction center protein j (3 kDa, Protein from Green alga, Protococcus salinus)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Psbw (4 kDa, Protein from Dunaliella salina)
- Diacyl glycerol (625 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Ergosterol (396 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Dunaliella salina photosystem ii complex (Complex from Dunaliella salina)
- Cp29 (21 kDa, Protein from Dunaliella salina)
- Sodium ion (22 Da, Ligand)
- Lhcii m2 (23 kDa, Protein from Dunaliella salina)
- Lhcii m3 (24 kDa, Protein from Dunaliella salina)
- Photosystem ii protein d1 (37 kDa, Protein from Green alga, Protococcus salinus)
- Psbo (25 kDa, Protein from Dunaliella salina)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Green alga, Protococcus salinus)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Psbp (20 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein m (3 kDa, Protein from Green alga, Protococcus salinus)
- Photosystem ii reaction center protein l (4 kDa, Protein from Green alga, Protococcus salinus)
- Tripalmitoylglycerol (807 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Green alga, Protococcus salinus)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Psbu (3 kDa, Protein from Dunaliella salina)
- Glycerol (92 Da, Ligand)
- Cp29 (21 kDa, Protein from Dunaliella salina)
- Cp26 (26 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit alpha (8 kDa, Protein from Green alga, Protococcus salinus)
- Photosystem ii reaction center protein i (3 kDa, Protein from Green alga, Protococcus salinus)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem ii d2 protein (38 kDa, Protein from Green alga, Protococcus salinus)
- Psbx (2 kDa, Protein from Dunaliella salina)
- Chlorophyll a (893 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Green alga, Protococcus salinus)
- Sphingosine (299 Da, Ligand)
- Photosystem ii cp47 reaction center protein (53 kDa, Protein from Green alga, Protococcus salinus)
- Pheophytin a (871 Da, Ligand)
- Psbz (6 kDa, Protein from Dunaliella salina)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Lhcii m1 (23 kDa, Protein from Dunaliella salina)
- Trimethyl-[(2~{r})-1-oxidanyl-1-oxidanylidene-4-[(2~{s})-2-[(1~{s})-1-oxidanyloctadecoxy]-3-[(1~{r})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium (773 Da, Ligand)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem ii reaction center protein t (3 kDa, Protein from Green alga, Protococcus salinus)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Cytochrome b559 subunit beta (3 kDa, Protein from Green alga, Protococcus salinus)
- Photosystem ii reaction center protein h (7 kDa, Protein from Green alga, Protococcus salinus)
- Photosystem ii reaction center protein m (3 kDa, Protein from Green alga, Protococcus salinus)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Unstacked compact Dunaliella PSII
Resolution: 3.61 Å
EM Method: Single-particle
Fitted PDBs: 7pnk
Q-score: 0.381
Caspy I, Fadeeva M, Mazor Y, Nelson N
eLife (2023) 12 [ Pubmed: 36799903 DOI: doi:10.7554/eLife.81150 ]
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- Psbx (2 kDa, Protein from Green alga, Protococcus salinus)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Dunaliella salina photosystem ii complex (Complex from Dunaliella salina)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Dunaliella salina)
- Lhcii m1 (23 kDa, Protein from Green alga, Protococcus salinus)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein i (3 kDa, Protein from Dunaliella salina)
- Psbo (25 kDa, Protein from Green alga, Protococcus salinus)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Dunaliella salina)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein j (3 kDa, Protein from Dunaliella salina)
- Psbp (20 kDa, Protein from Green alga, Protococcus salinus)
- Tripalmitoylglycerol (807 Da, Ligand)
- Cp26 (26 kDa, Protein from Green alga, Protococcus salinus)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Dunaliella salina)
- Chloride ion (35 Da, Ligand)
- Glycerol (92 Da, Ligand)
- Chlorophyll a-b binding protein of lhcii type i, chloroplastic (24 kDa, Protein from Green alga, Protococcus salinus)
- Cytochrome b559 subunit alpha (8 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit beta (3 kDa, Protein from Dunaliella salina)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Dunaliella salina)
- Chlorophyll a (893 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Psbu (3 kDa, Protein from Green alga, Protococcus salinus)
- Chlorophyll b (907 Da, Ligand)
- Sphingosine (299 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein h (7 kDa, Protein from Dunaliella salina)
- Psbw (4 kDa, Protein from Green alga, Protococcus salinus)
- Pheophytin a (871 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii protein d1 (37 kDa, Protein from Dunaliella salina)
- Photosystem ii d2 protein (38 kDa, Protein from Dunaliella salina)
- Photosystem ii cp47 reaction center protein (53 kDa, Protein from Dunaliella salina)
- Trimethyl-[(2~{r})-1-oxidanyl-1-oxidanylidene-4-[(2~{s})-2-[(1~{s})-1-oxidanyloctadecoxy]-3-[(1~{r})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium (773 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem ii reaction center protein t (3 kDa, Protein from Dunaliella salina)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Red alga C.merolae Photosystem I
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7blz
Q-score: 0.547
Nelson N, Klaiman D, Hippler M
To Be Published
- Photosystem i p700 chlorophyll a apoprotein a2 (15 kDa, Protein from Red alga)
- Diacyl glycerol (625 Da, Ligand)
- Ergosterol (396 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Red alga)
- Water (18 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Red alga)
- Calcium ion (40 Da, Ligand)
- Similar to light harvesting protein (19 kDa, Protein from Red alga)
- Phosphatidylinositol (887 Da, Ligand)
- Psi-f (17 kDa, Protein from Red alga)
- Photosystem i reaction center subunit xii (2 kDa, Protein from Red alga)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Psi-k (5 kDa, Protein from Red alga)
- Phylloquinone (450 Da, Ligand)
- Photosystem i (Complex from Cyanidioschyzon merolae strain 10D)
- Photosystem i reaction center subunit xi (14 kDa, Protein from Red alga)
- Psao (10 kDa, Protein from Red alga)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Red alga)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Red alga)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Red alga)
- Lhcr3 (19 kDa, Protein from Red alga)
- Similar to chlorophyll a/b-binding protein, cp24 (19 kDa, Protein from Red alga)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i iron-sulfur center subunit vii (6 kDa, Protein from Red alga)
- Beta-carotene (536 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- (1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
Structure of low-light grown Chlorella ohadii Photosystem I
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6zzx
Q-score: 0.621
Caspy I, Neumann E, Fadeeva M, Liveanu V, Savitsky A, Frank A, Kalisman YL, Shkolnisky Y, Murik O, Treves H, Hartmann V, Nowaczyk MM, Schuhmann W, Rogner M, Willner I, Kaplan A, Schuster G, Nelson N, Lubitz W, Nechushtai R
Nat Plants (2021) 7 pp. 1314-1322 [ DOI: doi:10.1038/s41477-021-00983-1 Pubmed: 34462576 ]
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Freshwater green alga)
- Diacyl glycerol (625 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Photosystem i reaction center subunit chloroplastic (15 kDa, Protein from Freshwater green alga)
- (3~{e},5~{e},7~{e})-6-methyl-8-[(6~{r})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one (260 Da, Ligand)
- Photosystem i reaction center subunit chloroplastic (8 kDa, Protein from Freshwater green alga)
- Water (18 Da, Ligand)
- Oleic acid (282 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Freshwater green alga)
- Photosystem i reaction center subunit chloroplastic (10 kDa, Protein from Freshwater green alga)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Freshwater green alga)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Psi-f (18 kDa, Protein from Freshwater green alga)
- Palmitic acid (256 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Freshwater green alga)
- Lhca7 (24 kDa, Protein from Freshwater green alga)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Freshwater green alga)
- Tripalmitoylglycerol (807 Da, Ligand)
- Photosystem i subunit o (9 kDa, Protein from Freshwater green alga)
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- [2-((1-oxododecanoxy-(2-hydroxy-3-propanyl))-phosphonate-oxy)-ethyl]-trimethylammonium (440 Da, Ligand)
- Glutathione reductase (26 kDa, Protein from Freshwater green alga)
- Iron/sulfur cluster (351 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Benzene-1,3,5-triol (126 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Freshwater green alga)
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Freshwater green alga)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Freshwater green alga)
- Photosystem i (1 MDa, Complex from Chlorella ohadii)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Freshwater green alga)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Freshwater green alga)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit vi-chloroplastic-like (10 kDa, Protein from Freshwater green alga)
- Chlorophyll a (893 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Sphingosine (299 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Freshwater green alga)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Freshwater green alga)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Freshwater green alga)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Astaxanthin (596 Da, Ligand)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Beta,beta-caroten-4-one (550 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Lhca4 (23 kDa, Protein from Freshwater green alga)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Freshwater green alga)
Structure of high-light grown Chlorella ohadii photosystem I
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 6zzy
Q-score: 0.561
Caspy I, Neumann E, Fadeeva M, Liveanu V, Savitsky A, Frank A, Kalisman YL, Shkolnisky Y, Murik O, Treves H, Hartmann V, Nowaczyk MM, Schuhmann W, Rogner M, Willner I, Kaplan A, Schuster G, Nelson N, Lubitz W, Nechushtai R
Nat Plants (2021) 7 pp. 1314-1322 [ DOI: doi:10.1038/s41477-021-00983-1 Pubmed: 34462576 ]
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Freshwater green alga)
- Diacyl glycerol (625 Da, Ligand)
- Ergosterol (396 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Photosystem i reaction center subunit chloroplastic (15 kDa, Protein from Freshwater green alga)
- (3~{e},5~{e},7~{e})-6-methyl-8-[(6~{r})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one (260 Da, Ligand)
- Psi-k (8 kDa, Protein from Freshwater green alga)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Freshwater green alga)
- Oleic acid (282 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Freshwater green alga)
- (2z,4e)-5-[(1s)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid (264 Da, Ligand)
- Psi subunit v (16 kDa, Protein from Freshwater green alga)
- Photosystem i reaction center subunit chloroplastic (10 kDa, Protein from Freshwater green alga)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Freshwater green alga)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Psi-f (18 kDa, Protein from Freshwater green alga)
- Photosystem i iron-sulfur center (8 kDa, Protein from Freshwater green alga)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Freshwater green alga)
- Tripalmitoylglycerol (807 Da, Ligand)
- [2-((1-oxododecanoxy-(2-hydroxy-3-propanyl))-phosphonate-oxy)-ethyl]-trimethylammonium (440 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- Glutathione reductase (26 kDa, Protein from Freshwater green alga)
- Iron/sulfur cluster (351 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- High light grown chlorella ohadii photosystem i (1 MDa, Complex from Chlorella ohadii)
- 2-(2-azanylethanoylamino)ethanoic acid (132 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Freshwater green alga)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Freshwater green alga)
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Freshwater green alga)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Freshwater green alga)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Freshwater green alga)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit vi-chloroplastic-like (10 kDa, Protein from Freshwater green alga)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Freshwater green alga)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Sphingosine (299 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Freshwater green alga)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Freshwater green alga)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Beta,beta-caroten-4-one (550 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Freshwater green alga)
Structure of small high-light grown Chlorella ohadii photosystem I
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7a4p
Q-score: 0.278
Caspy I, Neumann E, Fadeeva M, Liveanu V, Savitsky A, Frank A, Kalisman YL, Shkolnisky Y, Murik O, Treves H, Hartmann V, Nowaczyk MM, Schuhmann W, Rogner M, Willner I, Kaplan A, Schuster G, Nelson N, Lubitz W, Nechushtai R
Nat Plants (2021) 7 pp. 1314-1322 [ DOI: doi:10.1038/s41477-021-00983-1 Pubmed: 34462576 ]
- Diacyl glycerol (625 Da, Ligand)
- Ergosterol (396 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlorella ohadii)
- Phosphatidylethanolamine (734 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Chlorella ohadii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlorella ohadii)
- (3~{e},5~{e},7~{e})-6-methyl-8-[(6~{r})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one (260 Da, Ligand)
- Oleic acid (282 Da, Ligand)
- Photosystem i reaction center subunit chloroplastic (10 kDa, Protein from Chlorella ohadii)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Chlorella ohadii)
- Small high light grown chlorella ohadii photosystem i (900 kDa, Complex from Chlorella ohadii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlorella ohadii)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlorella ohadii)
- Psi-f (18 kDa, Protein from Chlorella ohadii)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Photosystem i reaction center subunit vi-chloroplastic-like (329 Da, Protein from Chlorella ohadii)
- Phylloquinone (450 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Chlorella ohadii)
- Tripalmitoylglycerol (807 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
- [2-((1-oxododecanoxy-(2-hydroxy-3-propanyl))-phosphonate-oxy)-ethyl]-trimethylammonium (440 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- 2-(2-azanylethanoylamino)ethanoic acid (132 Da, Ligand)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Glutathione reductase (26 kDa, Protein from Chlorella ohadii)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Chlorella ohadii)
- Psi subunit v (16 kDa, Protein from Chlorella ohadii)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Chlorella ohadii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Psi-k (8 kDa, Protein from Chlorella ohadii)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Chlorella ohadii)
- Sphingosine (299 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Chlorella ohadii)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Beta,beta-caroten-4-one (550 Da, Ligand)
- Photosystem i reaction center subunit chloroplastic (15 kDa, Protein from Chlorella ohadii)
- Beta-carotene (536 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Palmitic acid (256 Da, Ligand)