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Cryo-EM structure of the Photosystem II - LHCII supercomplex from Chlorella ohadi
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 8bd3
Q-score: 0.574
Fadeeva M, Klaiman D, Caspy I, Nelson N
Cells (2023) 12 [ DOI: doi:10.3390/cells12151971 Pubmed: 37566050 ]
- Photosystem ii reaction center protein h (7 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Chlorella ohadii)
- Chlorophyll a (893 Da, Ligand)
- Multifunctional fusion protein (23 kDa, Protein from Chlorella ohadii)
- Photosystem ii oxygen evolving enhancer 2 (20 kDa, Protein from Chlorella ohadii)
- Chlorophyll a-b binding of lhcii (23 kDa, Protein from Chlorella ohadii)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein l (4 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center w protein (6 kDa, Protein from Chlorella ohadii)
- Bicarbonate ion (61 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Cytochrome b559 subunit beta (4 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein z (6 kDa, Protein from Chlorella ohadii)
- Chlorophyll a b binding cp29 (25 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein j (3 kDa, Protein from Chlorella ohadii)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Chlorophyll a-b binding of lhcii (23 kDa, Protein from Chlorella ohadii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Photosystem ii reaction center protein m (5 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein t (3 kDa, Protein from Chlorella ohadii)
- Chloroplast psby (3 kDa, Protein from Chlorella ohadii)
- Photosystem ii protein d1 (37 kDa, Protein from Chlorella ohadii)
- Chloride ion (35 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Chlorella ohadii)
- Chloroplast oxygen-evolving enhancer protein 3 (15 kDa, Protein from Chlorella ohadii)
- Chloroplast photosystem ii 10 kda protein (11 kDa, Protein from Chlorella ohadii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Chlorella ohadii)
- Pheophytin a (871 Da, Ligand)
- Chlorella ohadii photosystem ii (1 MDa, Complex from Chlorella ohadii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Chlorella ohadii)
- Beta-carotene (536 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein i (3 kDa, Protein from Chlorella ohadii)
- Photosystem ii d2 protein (38 kDa, Protein from Chlorella ohadii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem ii reaction center protein x (3 kDa, Protein from Chlorella ohadii)
- Photosystem ii cp47 reaction center protein (55 kDa, Protein from Chlorella ohadii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chloroplast oxygen-evolving enhancer protein 1 (25 kDa, Protein from Chlorella ohadii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Water (18 Da, Ligand)
- Chlorophyll a b-binding cp26 (27 kDa, Protein from Chlorella ohadii)
Unstacked compact Dunaliella PSII
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 7pi0
Q-score: 0.623
Caspy I, Fadeeva M, Mazor Y, Nelson N
eLife (2023) 12 [ Pubmed: 36799903 DOI: doi:10.7554/eLife.81150 ]
- Photosystem ii protein d1 (37 kDa, Protein from Dunaliella salina)
- Chlorophyll a (893 Da, Ligand)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit alpha (8 kDa, Protein from Dunaliella salina)
- Photosystem ii cp47 reaction center protein (53 kDa, Protein from Dunaliella salina)
- Sphingosine (299 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Psbw (4 kDa, Protein from Dunaliella salina)
- Bicarbonate ion (61 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Photosystem ii reaction center protein j (3 kDa, Protein from Dunaliella salina)
- Psbx (2 kDa, Protein from Dunaliella salina)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Dunaliella salina)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Cp29 (21 kDa, Protein from Dunaliella salina)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Cp26 (26 kDa, Protein from Dunaliella salina)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein i (3 kDa, Protein from Dunaliella salina)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Dunaliella salina)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Lhcii m1 (23 kDa, Protein from Dunaliella salina)
- Psbp (20 kDa, Protein from Dunaliella salina)
- Psbu (3 kDa, Protein from Dunaliella salina)
- Pheophytin a (871 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii d2 protein (38 kDa, Protein from Dunaliella salina)
- Beta-carotene (536 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Dunaliella salina)
- Sodium ion (22 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Dunaliella salina)
- Psbm (3 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein t (3 kDa, Protein from Dunaliella salina)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Photosystem ii reaction center protein h (7 kDa, Protein from Dunaliella salina)
- Psbo (25 kDa, Protein from Dunaliella salina)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Cytochrome b559 subunit beta (3 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Dunaliella salina)
- Dunaliella salina photosystem ii complex (Complex from Dunaliella salina)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Water (18 Da, Ligand)
- Lhcii m3 (24 kDa, Protein from Dunaliella salina)
Unstacked stretched Dunaliella PSII
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 7pi5
Q-score: 0.542
Caspy I, Fadeeva M, Mazor Y, Nelson N
eLife (2023) 12 [ Pubmed: 36799903 DOI: doi:10.7554/eLife.81150 ]
- Photosystem ii protein d1 (37 kDa, Protein from Dunaliella salina)
- Chlorophyll a (893 Da, Ligand)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit alpha (8 kDa, Protein from Dunaliella salina)
- Psii 6.1 kda protein (4 kDa, Protein from Dunaliella salina)
- Sphingosine (299 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Glycerol (92 Da, Ligand)
- Photosystem ii reaction center protein j (3 kDa, Protein from Dunaliella salina)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Dunaliella salina)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Cp29 (21 kDa, Protein from Dunaliella salina)
- Cp26 (26 kDa, Protein from Dunaliella salina)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein i (3 kDa, Protein from Dunaliella salina)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Dunaliella salina)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem ii cp47 reaction center protein (53 kDa, Protein from Dunaliella salina)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Lhcii m1 (23 kDa, Protein from Dunaliella salina)
- Psbp (20 kDa, Protein from Dunaliella salina)
- Psbu (3 kDa, Protein from Dunaliella salina)
- Pheophytin a (871 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- Trimethyl-[(2~{r})-1-oxidanyl-1-oxidanylidene-4-[(2~{s})-2-[(1~{s})-1-oxidanyloctadecoxy]-3-[(1~{r})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium (773 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii d2 protein (38 kDa, Protein from Dunaliella salina)
- Beta-carotene (536 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Dunaliella salina)
- Sodium ion (22 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein t (3 kDa, Protein from Dunaliella salina)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Photosystem ii reaction center protein h (7 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein m (3 kDa, Protein from Dunaliella salina)
- Psbo (25 kDa, Protein from Dunaliella salina)
- Hypothetical protein (2 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit beta (3 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Dunaliella salina)
- Dunaliella salina photosystem ii complex (Complex from Dunaliella salina)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Water (18 Da, Ligand)
- Lhcii m3 (24 kDa, Protein from Dunaliella salina)
Stacked compact Dunaliella PSII
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7pin
Q-score: 0.328
Caspy I, Fadeeva M, Mazor Y, Nelson N
eLife (2023) 12 [ Pubmed: 36799903 DOI: doi:10.7554/eLife.81150 ]
- Photosystem ii protein d1 (37 kDa, Protein from Dunaliella salina)
- Psbj (3 kDa, Protein from Dunaliella salina)
- Chlorophyll a (893 Da, Ligand)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit alpha (8 kDa, Protein from Dunaliella salina)
- Sphingosine (299 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Psbw (4 kDa, Protein from Dunaliella salina)
- Bicarbonate ion (61 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Glycerol (92 Da, Ligand)
- Psbx (2 kDa, Protein from Dunaliella salina)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Dunaliella salina)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Cp29 (21 kDa, Protein from Dunaliella salina)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Cp26 (26 kDa, Protein from Dunaliella salina)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein i (3 kDa, Protein from Dunaliella salina)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Dunaliella salina)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem ii cp47 reaction center protein (53 kDa, Protein from Dunaliella salina)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Lhcii m1 (23 kDa, Protein from Dunaliella salina)
- Ergosterol (396 Da, Ligand)
- Psbp (20 kDa, Protein from Dunaliella salina)
- Psbu (3 kDa, Protein from Dunaliella salina)
- Pheophytin a (871 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- Tripalmitoylglycerol (807 Da, Ligand)
- Trimethyl-[(2~{r})-1-oxidanyl-1-oxidanylidene-4-[(2~{s})-2-[(1~{s})-1-oxidanyloctadecoxy]-3-[(1~{r})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium (773 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii d2 protein (38 kDa, Protein from Dunaliella salina)
- Beta-carotene (536 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Dunaliella salina)
- Sodium ion (22 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Dunaliella salina)
- Psbm (3 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein t (3 kDa, Protein from Dunaliella salina)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Photosystem ii reaction center protein h (7 kDa, Protein from Dunaliella salina)
- Psbo (25 kDa, Protein from Dunaliella salina)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Cytochrome b559 subunit beta (3 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Dunaliella salina)
- Dunaliella salina photosystem ii complex (Complex from Dunaliella salina)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Lhcii m3 (24 kDa, Protein from Dunaliella salina)
Stacked stretched Dunaliella PSII
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7piw
Q-score: 0.236
Caspy I, Fadeeva M, Mazor Y, Nelson N
eLife (2023) 12 [ Pubmed: 36799903 DOI: doi:10.7554/eLife.81150 ]
- Chlorophyll a (893 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Green alga, Protococcus salinus)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Sphingosine (299 Da, Ligand)
- Photosystem ii cp47 reaction center protein (53 kDa, Protein from Green alga, Protococcus salinus)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Psbw (4 kDa, Protein from Dunaliella salina)
- Bicarbonate ion (61 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Glycerol (92 Da, Ligand)
- Psbx (2 kDa, Protein from Dunaliella salina)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem ii reaction center protein h (7 kDa, Protein from Green alga, Protococcus salinus)
- Photosystem ii reaction center protein t (3 kDa, Protein from Green alga, Protococcus salinus)
- Phosphatidylethanolamine (734 Da, Ligand)
- Photosystem ii protein d1 (37 kDa, Protein from Green alga, Protococcus salinus)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Cp29 (21 kDa, Protein from Dunaliella salina)
- Cp26 (26 kDa, Protein from Dunaliella salina)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Green alga, Protococcus salinus)
- Psbz (6 kDa, Protein from Dunaliella salina)
- Chlorophyll b (907 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Cytochrome b559 subunit beta (3 kDa, Protein from Green alga, Protococcus salinus)
- Photosystem ii d2 protein (38 kDa, Protein from Green alga, Protococcus salinus)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Lhcii m1 (23 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein i (3 kDa, Protein from Green alga, Protococcus salinus)
- Ergosterol (396 Da, Ligand)
- Psbp (20 kDa, Protein from Dunaliella salina)
- Psbu (3 kDa, Protein from Dunaliella salina)
- Pheophytin a (871 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- Tripalmitoylglycerol (807 Da, Ligand)
- Trimethyl-[(2~{r})-1-oxidanyl-1-oxidanylidene-4-[(2~{s})-2-[(1~{s})-1-oxidanyloctadecoxy]-3-[(1~{r})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium (773 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Green alga, Protococcus salinus)
- Cp29 (21 kDa, Protein from Dunaliella salina)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Green alga, Protococcus salinus)
- Lhcii m2 (23 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein k (4 kDa, Protein from Green alga, Protococcus salinus)
- Psbo (25 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein j (3 kDa, Protein from Green alga, Protococcus salinus)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Cytochrome b559 subunit alpha (8 kDa, Protein from Green alga, Protococcus salinus)
- Dunaliella salina photosystem ii complex (Complex from Dunaliella salina)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Green alga, Protococcus salinus)
- Lhcii m3 (24 kDa, Protein from Dunaliella salina)
Unstacked compact Dunaliella PSII
Resolution: 3.61 Å
EM Method: Single-particle
Fitted PDBs: 7pnk
Q-score: 0.381
Caspy I, Fadeeva M, Mazor Y, Nelson N
eLife (2023) 12 [ Pubmed: 36799903 DOI: doi:10.7554/eLife.81150 ]
- Photosystem ii protein d1 (37 kDa, Protein from Dunaliella salina)
- Chlorophyll a (893 Da, Ligand)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Dunaliella salina)
- Cytochrome b559 subunit alpha (8 kDa, Protein from Dunaliella salina)
- Photosystem ii cp47 reaction center protein (53 kDa, Protein from Dunaliella salina)
- Sphingosine (299 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Dunaliella salina)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Glycerol (92 Da, Ligand)
- Photosystem ii reaction center protein j (3 kDa, Protein from Dunaliella salina)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Dunaliella salina)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein i (3 kDa, Protein from Dunaliella salina)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Psbp (20 kDa, Protein from Green alga, Protococcus salinus)
- Psbo (25 kDa, Protein from Green alga, Protococcus salinus)
- Chloride ion (35 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Dunaliella salina)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Psbu (3 kDa, Protein from Green alga, Protococcus salinus)
- Lhcii m1 (23 kDa, Protein from Green alga, Protococcus salinus)
- Pheophytin a (871 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- Cp26 (26 kDa, Protein from Green alga, Protococcus salinus)
- Trimethyl-[(2~{r})-1-oxidanyl-1-oxidanylidene-4-[(2~{s})-2-[(1~{s})-1-oxidanyloctadecoxy]-3-[(1~{r})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium (773 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Tripalmitoylglycerol (807 Da, Ligand)
- Photosystem ii d2 protein (38 kDa, Protein from Dunaliella salina)
- Beta-carotene (536 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Dunaliella salina)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein t (3 kDa, Protein from Dunaliella salina)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Photosystem ii reaction center protein h (7 kDa, Protein from Dunaliella salina)
- Chlorophyll a-b binding protein of lhcii type i, chloroplastic (24 kDa, Protein from Green alga, Protococcus salinus)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Cytochrome b559 subunit beta (3 kDa, Protein from Dunaliella salina)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Dunaliella salina)
- Dunaliella salina photosystem ii complex (Complex from Dunaliella salina)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Psbx (2 kDa, Protein from Green alga, Protococcus salinus)
- Psbw (4 kDa, Protein from Green alga, Protococcus salinus)
Red alga C.merolae Photosystem I
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7blz
Q-score: 0.547
Nelson N, Klaiman D, Hippler M
To Be Published
- Chlorophyll a (893 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Photosystem i reaction center subunit xi (14 kDa, Protein from Red alga)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Similar to chlorophyll a/b-binding protein, cp24 (19 kDa, Protein from Red alga)
- Psao (10 kDa, Protein from Red alga)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- (1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
- Photosystem i (Complex from Cyanidioschyzon merolae strain 10D)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Red alga)
- Phosphatidylethanolamine (734 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Red alga)
- Chlorophyll a isomer (893 Da, Ligand)
- Psi-k (5 kDa, Protein from Red alga)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (15 kDa, Protein from Red alga)
- Ergosterol (396 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Red alga)
- Photosystem i iron-sulfur center subunit vii (6 kDa, Protein from Red alga)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Similar to light harvesting protein (19 kDa, Protein from Red alga)
- Photosystem i iron-sulfur center (8 kDa, Protein from Red alga)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Red alga)
- Lhcr3 (19 kDa, Protein from Red alga)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Psi-f (17 kDa, Protein from Red alga)
- Phylloquinone (450 Da, Ligand)
- Water (18 Da, Ligand)
- Photosystem i reaction center subunit xii (2 kDa, Protein from Red alga)
- Phosphatidylinositol (887 Da, Ligand)
Structure of low-light grown Chlorella ohadii Photosystem I
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6zzx
Q-score: 0.621
Caspy I, Neumann E, Fadeeva M, Liveanu V, Savitsky A, Frank A, Kalisman YL, Shkolnisky Y, Murik O, Treves H, Hartmann V, Nowaczyk MM, Schuhmann W, Rogner M, Willner I, Kaplan A, Schuster G, Nelson N, Lubitz W, Nechushtai R
Nat Plants (2021) 7 pp. 1314-1322 [ Pubmed: 34462576 DOI: doi:10.1038/s41477-021-00983-1 ]
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Freshwater green alga)
- Chlorophyll a (893 Da, Ligand)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Freshwater green alga)
- Sphingosine (299 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Freshwater green alga)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Freshwater green alga)
- Photosystem i subunit o (9 kDa, Protein from Freshwater green alga)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Freshwater green alga)
- Photosystem i reaction center subunit chloroplastic (8 kDa, Protein from Freshwater green alga)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Freshwater green alga)
- Glutathione reductase (26 kDa, Protein from Freshwater green alga)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Lhca7 (24 kDa, Protein from Freshwater green alga)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Freshwater green alga)
- Lhca4 (23 kDa, Protein from Freshwater green alga)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- [2-((1-oxododecanoxy-(2-hydroxy-3-propanyl))-phosphonate-oxy)-ethyl]-trimethylammonium (440 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Freshwater green alga)
- Chlorophyll b (907 Da, Ligand)
- Oleic acid (282 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Freshwater green alga)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit chloroplastic (10 kDa, Protein from Freshwater green alga)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Freshwater green alga)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Freshwater green alga)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit vi-chloroplastic-like (10 kDa, Protein from Freshwater green alga)
- Beta,beta-caroten-4-one (550 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Freshwater green alga)
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Freshwater green alga)
- Diacyl glycerol (625 Da, Ligand)
- Tripalmitoylglycerol (807 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Benzene-1,3,5-triol (126 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Astaxanthin (596 Da, Ligand)
- Photosystem i (1 MDa, Complex from Chlorella ohadii)
- Phylloquinone (450 Da, Ligand)
- Psi-f (18 kDa, Protein from Freshwater green alga)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit chloroplastic (15 kDa, Protein from Freshwater green alga)
- (3~{e},5~{e},7~{e})-6-methyl-8-[(6~{r})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one (260 Da, Ligand)
- Water (18 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Freshwater green alga)
Structure of high-light grown Chlorella ohadii photosystem I
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 6zzy
Q-score: 0.561
Caspy I, Neumann E, Fadeeva M, Liveanu V, Savitsky A, Frank A, Kalisman YL, Shkolnisky Y, Murik O, Treves H, Hartmann V, Nowaczyk MM, Schuhmann W, Rogner M, Willner I, Kaplan A, Schuster G, Nelson N, Lubitz W, Nechushtai R
Nat Plants (2021) 7 pp. 1314-1322 [ Pubmed: 34462576 DOI: doi:10.1038/s41477-021-00983-1 ]
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Freshwater green alga)
- Chlorophyll a (893 Da, Ligand)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Freshwater green alga)
- Sphingosine (299 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Freshwater green alga)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Freshwater green alga)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Freshwater green alga)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Freshwater green alga)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Freshwater green alga)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Freshwater green alga)
- High light grown chlorella ohadii photosystem i (1 MDa, Complex from Chlorella ohadii)
- Glutathione reductase (26 kDa, Protein from Freshwater green alga)
- Phosphatidylethanolamine (734 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Freshwater green alga)
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Freshwater green alga)
- [2-((1-oxododecanoxy-(2-hydroxy-3-propanyl))-phosphonate-oxy)-ethyl]-trimethylammonium (440 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Oleic acid (282 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Freshwater green alga)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit chloroplastic (10 kDa, Protein from Freshwater green alga)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Freshwater green alga)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Freshwater green alga)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit vi-chloroplastic-like (10 kDa, Protein from Freshwater green alga)
- Ergosterol (396 Da, Ligand)
- Beta,beta-caroten-4-one (550 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- 2-(2-azanylethanoylamino)ethanoic acid (132 Da, Ligand)
- Psi subunit v (16 kDa, Protein from Freshwater green alga)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Freshwater green alga)
- Diacyl glycerol (625 Da, Ligand)
- Tripalmitoylglycerol (807 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Psi-k (8 kDa, Protein from Freshwater green alga)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- (2z,4e)-5-[(1s)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid (264 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Psi-f (18 kDa, Protein from Freshwater green alga)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit chloroplastic (15 kDa, Protein from Freshwater green alga)
- (3~{e},5~{e},7~{e})-6-methyl-8-[(6~{r})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one (260 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Freshwater green alga)
Structure of small high-light grown Chlorella ohadii photosystem I
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7a4p
Q-score: 0.278
Caspy I, Neumann E, Fadeeva M, Liveanu V, Savitsky A, Frank A, Kalisman YL, Shkolnisky Y, Murik O, Treves H, Hartmann V, Nowaczyk MM, Schuhmann W, Rogner M, Willner I, Kaplan A, Schuster G, Nelson N, Lubitz W, Nechushtai R
Nat Plants (2021) 7 pp. 1314-1322 [ Pubmed: 34462576 DOI: doi:10.1038/s41477-021-00983-1 ]
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
- Photosystem i reaction center subunit chloroplastic (10 kDa, Protein from Chlorella ohadii)
- Psi-k (8 kDa, Protein from Chlorella ohadii)
- Chlorophyll a (893 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Chlorella ohadii)
- Sphingosine (299 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Chlorella ohadii)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Chlorella ohadii)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Chlorella ohadii)
- Photosystem i reaction center subunit vi-chloroplastic-like (329 Da, Protein from Chlorella ohadii)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Glutathione reductase (26 kDa, Protein from Chlorella ohadii)
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Chlorella ohadii)
- Photosystem i reaction center subunit chloroplastic (15 kDa, Protein from Chlorella ohadii)
- Phosphatidylethanolamine (734 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlorella ohadii)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlorella ohadii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlorella ohadii)
- [2-((1-oxododecanoxy-(2-hydroxy-3-propanyl))-phosphonate-oxy)-ethyl]-trimethylammonium (440 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Oleic acid (282 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Chlorella ohadii)
- Chlorophyll a isomer (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
- Psi subunit v (16 kDa, Protein from Chlorella ohadii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Ergosterol (396 Da, Ligand)
- Beta,beta-caroten-4-one (550 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlorella ohadii)
- 2-(2-azanylethanoylamino)ethanoic acid (132 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- Tripalmitoylglycerol (807 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Psi-f (18 kDa, Protein from Chlorella ohadii)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- (3~{e},5~{e},7~{e})-6-methyl-8-[(6~{r})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one (260 Da, Ligand)
- Small high light grown chlorella ohadii photosystem i (900 kDa, Complex from Chlorella ohadii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Chlorella ohadii)