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Synechocystis PCC 6803 Phycobilisome core from up-down rod conformation
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7sc7
Q-score: 0.454
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ DOI: doi:10.1038/s41586-022-05156-4 Pubmed: 36045294 ]
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Phycobilisome from synechocystis pcc 6803 (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Sll1873 protein (12 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
Synechocystis PCC 6803 Phycobilisome rod from PBS sample
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 7sc8
Q-score: 0.598
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ DOI: doi:10.1038/s41586-022-05156-4 Pubmed: 36045294 ]
- C-phycocyanin alpha subunit (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 8.9 kda linker polypeptide, phycocyanin-associated, rod (9 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 2 (30 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome from synechocystis pcc 6803 (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Water (18 Da, Ligand)
- C-phycocyanin beta subunit (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 1 (32 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
Synechocystis PCC 6803 Phycobilisome core, complex with OCP
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7sc9
Q-score: 0.449
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ DOI: doi:10.1038/s41586-022-05156-4 Pubmed: 36045294 ]
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Complex of phycobilisome from synechocystis pcc 6803 with ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Sll1873 protein (12 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
Synechocystis PCC 6803 Phycobilisome rod from OCP-PBS complex sample
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 7sca
Q-score: 0.712
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ DOI: doi:10.1038/s41586-022-05156-4 Pubmed: 36045294 ]
- C-phycocyanin alpha subunit (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 8.9 kda linker polypeptide, phycocyanin-associated, rod (9 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 2 (30 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Complex of phycobilisome from synechocystis pcc 6803 with ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Water (18 Da, Ligand)
- C-phycocyanin beta subunit (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 1 (32 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
B-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7scb
Q-score: 0.497
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ DOI: doi:10.1038/s41586-022-05156-4 Pubmed: 36045294 ]
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Complex of phycobilisome from synechocystis pcc 6803 with ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Sll1873 protein (12 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
T-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7scc
Q-score: 0.458
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ DOI: doi:10.1038/s41586-022-05156-4 Pubmed: 36045294 ]
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Complex of phycobilisome from synechocystis pcc 6803 with ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)