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sample_name:"Ubiquitin-like domain-containing protein"
Atomic structure of wheat ribosome reveals unique features of the plant ribosomes
Release date: March 27, 2024
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8jiv
Q-score: 0.649
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8jiv
Q-score: 0.649
Mishra RK, Sharma P, Khaja FT, Uday AB, Hussain T
Structure (2024) 32 pp. 562- [ Pubmed: 38458197 DOI: doi:10.1016/j.str.2024.02.006 ]
Sample:
- 5s rrna (38 kDa, RNA from Triticum aestivum)
- Ribosomal protein l18e/l15p domain-containing protein (21 kDa, Protein from Triticum aestivum)
- Ribosomal protein l3 (44 kDa, Protein from Triticum aestivum)
- Genome assembly, chromosome: ii (16 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l36 (12 kDa, Protein from Triticum aestivum)
- Ubiquitin-like domain-containing protein (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l37a, expressed (10 kDa, Protein from Triticum aestivum)
- Ribosomal protein l18e/l15p domain-containing protein (16 kDa, Protein from Triticum aestivum)
- Ribosomal l28e/mak16 domain-containing protein (16 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l13 (24 kDa, Protein from Triticum aestivum)
- Ribosomal protein l13a (23 kDa, Protein from Triticum aestivum)
- Ribosomal protein l6 alpha-beta domain-containing protein (21 kDa, Protein from Triticum aestivum)
- Genome assembly, chromosome: ii (12 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l21 (18 kDa, Protein from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- 60s ribosomal protein l7a (29 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l31 (14 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- The large subunit of wheat ribosome (Complex from Triticum aestivum)
- Ribosomal protein l7ae/l30e/s12e/gadd45 domain-containing protein (12 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l29 (6 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l27 (15 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul22 (19 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l38 (8 kDa, Protein from Triticum aestivum)
- 5.8s rrna (50 kDa, RNA from Triticum aestivum)
- 60s ribosomal protein l34 (13 kDa, Protein from Triticum aestivum)
- 25s rrna (1 MDa, RNA from Triticum aestivum)
- Ribosomal protein l5 eukaryotic c-terminal domain-containing protein (35 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l4 c-terminal domain-containing protein (44 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l35 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el32 (15 kDa, Protein from Triticum aestivum)
- Ribosomal protein l19 (24 kDa, Protein from Triticum aestivum)
- Kow domain-containing protein (14 kDa, Protein from Triticum aestivum)
- Ribosomal protein l37 (10 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l11 (20 kDa, Protein from Triticum aestivum)
- Ribosomal protein l14e domain-containing protein (15 kDa, Protein from Triticum aestivum)
- Genome assembly, chromosome: ii (14 kDa, Protein from Triticum aestivum)
- Ribosomal protein l17 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul30 (28 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l18a (21 kDa, Protein from Triticum aestivum)
- Trash domain-containing protein (18 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el33 (12 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l6 (25 kDa, Protein from Triticum aestivum)
- Ribosomal protein l15 (24 kDa, Protein from Triticum aestivum)
- Ribosomal protein l39 (6 kDa, Protein from Triticum aestivum)
- Ribosomal protein l10e/l16 domain-containing protein (24 kDa, Protein from Triticum aestivum)
- Ribosomal protein l2 c-terminal domain-containing protein (28 kDa, Protein from Triticum aestivum)
Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
Release date: Feb. 21, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8oo0
Q-score: 0.494
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8oo0
Q-score: 0.494
Klein MA, Wild K, Kisonaite M, Sinning I
Nat Commun (2024) 15 pp. 716-716 [ DOI: doi:10.1038/s41467-024-44862-7 Pubmed: 38267453 ]
Sample:
- 60s ribosomal protein l30-like protein (11 kDa, Protein from Thermochaetoides thermophila)
- 18s rrna (578 kDa, RNA from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s5-like protein (23 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Thermochaetoides thermophila)
- 5s rrna (38 kDa, RNA from Thermochaetoides thermophila DSM 1495)
- 28s rrna (1 MDa, RNA from Thermochaetoides thermophila)
- 40s ribosomal protein s19-like protein (17 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l29 (7 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l13 (24 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Thermochaetoides thermophila)
- Putative ribosomal protein (20 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s15-like protein (17 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Thermochaetoides thermophila)
- Putative guanine nucleotide-binding protein (35 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l41-a (3 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s23-like protein (15 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l5-like protein (35 kDa, Protein from Thermochaetoides thermophila)
- Map2 autoproteolysis product in complex with the 80s ribosome (Complex from Thermochaetoides thermophila)
- 40s ribosomal protein s11-like protein (18 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l10-like protein (25 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s30 (6 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s21-like protein (10 kDa, Protein from Thermochaetoides thermophila)
- Hyaluronan/mrna-binding protein domain-containing protein (32 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s22-like protein (14 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l44-like protein (12 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein l15 (24 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l2-like protein (27 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Thermochaetoides thermophila)
- Ubiquitin-like domain-containing protein (14 kDa, Protein from Thermochaetoides thermophila)
- Putative ribosomal protein (17 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s24 (15 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s2-like protein (28 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein l18-like protein (24 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l38 (9 kDa, Protein from Thermochaetoides thermophila)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (14 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s17-like protein (16 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s28-like protein (7 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l16-like protein (23 kDa, Protein from Thermochaetoides thermophila)
- Methionine aminopeptidase 2 (41 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l9-like protein (21 kDa, Protein from Thermochaetoides thermophila)
- Putative 60s ribosomal protein (15 kDa, Protein from Thermochaetoides thermophila)
- 5.8s rrna (50 kDa, RNA from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s8 (23 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s16-like protein (15 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l36 (12 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein s27-like protein (8 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l27 (15 kDa, Protein from Thermochaetoides thermophila)
- 60s acidic ribosomal protein p0 (33 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s10-like protein (18 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s4 (29 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l8 (29 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l20 (20 kDa, Protein from Thermochaetoides thermophila)
- Putative 60s ribosomal protein (13 kDa, Protein from Thermochaetoides thermophila)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s14-like protein (16 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s3-like protein (27 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s7 (23 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s12 (15 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l43-like protein (10 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l39 (6 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s27a-like protein (17 kDa, Protein from Thermochaetoides thermophila)
- Ribosome-associated molecular chaperone ssb1 (67 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s26 (13 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein l34-like protein (13 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s0 (31 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein l37 (10 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l22-like protein (14 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l6 (22 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l17-like protein (20 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s20-like protein (13 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s9-like protein (22 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s13-like protein (16 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s29 (6 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l24 (18 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein l19 (22 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s25 (10 kDa, Protein from Thermochaetoides thermophila)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s6 (27 kDa, Protein from Thermochaetoides thermophila)
- Ribosomal protein l18e/l15p domain-containing protein (16 kDa, Protein from Thermochaetoides thermophila)
- 40s ribosomal protein s1 (29 kDa, Protein from Thermochaetoides thermophila)
CryoEM structure of wheat 40S ribosomal subunit, head domain
Release date: Dec. 27, 2023
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 8r57
Q-score: 0.58
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 8r57
Q-score: 0.58
Kravchenko OV, Baymukhametov TN, Afonina ZA, Vassilenko KS
Int J Mol Sci (2023) 24 [ Pubmed: 38139282 DOI: doi:10.3390/ijms242417453 ]
Sample:
- 40s ribosomal protein s12 (15 kDa, Protein from Triticum aestivum)
- Ubiquitin-like domain-containing protein (17 kDa, Protein from Triticum aestivum)
- Water (18 Da, Ligand)
- Rna (458-mer) (584 kDa, RNA from Triticum aestivum)
- 40s ribosomal protein s25 (12 kDa, Protein from Triticum aestivum)
- Ribosomal protein rack1 subfamily. wd repeat g protein beta family (36 kDa, Protein from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s19 (17 kDa, Protein from Triticum aestivum)
- Ribosomal protein s20 (14 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us7c (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s3 (25 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s28 (7 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s16 (16 kDa, Protein from Triticum aestivum)
- Plectin/es10 n-terminal domain-containing protein (20 kDa, Protein from Triticum aestivum)
- Putative ribosomal protein s18 (17 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s15 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s17 (16 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit from triticum aestivum (common wheat) (Complex from Triticum aestivum)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
Release date: Sept. 6, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8bhf
Q-score: 0.492
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8bhf
Q-score: 0.492
Gangwar SP, Yen LY, Yelshanskaya MV, Korman A, Jones DR, Sobolevsky AI
Nat Struct Mol Biol (2023) 30 pp. 1481-1494 [ DOI: doi:10.1038/s41594-023-01080-x Pubmed: 37653241 ]
Sample:
- 60s ribosomal protein l8 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l28 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain (501 Da, Protein from Oryctolagus cuniculus)
- Ribosomal protein l36a like (12 kDa, Protein from Oryctolagus cuniculus)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l19 (21 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (547 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l18 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l12 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- 40s_sa_c domain-containing protein (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s26 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (12 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- Trash domain-containing protein (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- Mrna (896 Da, RNA from Oryctolagus cuniculus)
- Ubiquitin-like domain-containing protein (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l31 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s18 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10a (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s19 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (41 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (24 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (27 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l39-like (6 kDa, Protein from Oryctolagus cuniculus)
- Plectin/s10 n-terminal domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s14 (14 kDa, Protein from Oryctolagus cuniculus)
- Ubiquitin-40s ribosomal protein s27a (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (8 kDa, Protein from Oryctolagus cuniculus)
- Ccr4-not transcription complex subunit 3 (28 kDa, Protein from Homo sapiens)
- Ribosomal protein s20 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23/l25 n-terminal domain-containing protein (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s17 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s15 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosome complex (Complex from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l17 (17 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
96nm repeat of human respiratory doublet microtubule and associated axonemal complexes
Walton T, Gui M, Velkova S, Fassad MR, Hirst RA, Haarman E, O'Callaghan C, Bottier M, Burgoyne T, Mitchison HM, Brown A
Nature (2023) 618 pp. 625-633 [ DOI: doi:10.1038/s41586-023-06140-2 Pubmed: 37258679 ]
Sample:
- Coiled-coil domain-containing protein 40 (130 kDa, Protein from human)
- Dynein regulatory complex protein 9 (52 kDa, Protein from human)
- Dynein regulatory complex protein 11 (95 kDa, Protein from human)
- Dnaj homolog subfamily b member 13 (36 kDa, Protein from human)
- Protein flattop (19 kDa, Protein from human)
- Cilia- and flagella- associated protein 210 (66 kDa, Protein from human)
- Dynein regulatory complex protein 10 (52 kDa, Protein from human)
- Radial spoke head 1 homolog (35 kDa, Protein from human)
- Ef-hand domain-containing protein 1 (74 kDa, Protein from human)
- Dynein axonemal intermediate chain 1 (79 kDa, Protein from human)
- Cilia- and flagella-associated protein 43 (192 kDa, Protein from human)
- Rib43a-like with coiled-coils protein 1 (44 kDa, Protein from human)
- Sperm-associated antigen 8 (51 kDa, Protein from human)
- Uncharacterized protein cfap90 (17 kDa, Protein from human)
- Dynein regulatory complex subunit 3 (61 kDa, Protein from human)
- Radial spoke head protein 4 homolog a (80 kDa, Protein from human)
- Dynein axonemal heavy chain 5 (529 kDa, Protein from human)
- Tektin-2 (49 kDa, Protein from human)
- Dynein axonemal heavy chain 3 (471 kDa, Protein from human)
- Dynein axonemal intermediate chain 2 (68 kDa, Protein from human)
- Ef-hand domain-containing family member c2 (87 kDa, Protein from human)
- Coiled-coil domain-containing protein 96 (62 kDa, Protein from human)
- Cilia- and flagella-associated protein 61 (141 kDa, Protein from human)
- Ropporin-1-like protein (26 kDa, Protein from human)
- Axonemal complex (Complex from Homo sapiens)
- Outer dynein arm-docking complex subunit 1 (75 kDa, Protein from human)
- Nucleoside diphosphate kinase 7 (42 kDa, Protein from human)
- Dynein axonemal intermediate chain 7 (83 kDa, Protein from human)
- Piercer of microtubule wall 2 protein (13 kDa, Protein from human)
- Acta2 (42 kDa, Protein from human)
- Cilia- and flagella-associated protein 73 (35 kDa, Protein from human)
- Dynein regulatory complex subunit 2 (57 kDa, Protein from human)
- Centrin-2 (19 kDa, Protein from human)
- Sperm acrosome-associated protein 9 (25 kDa, Protein from human)
- Zinc finger mynd domain-containing protein 12 (41 kDa, Protein from human)
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Cilia- and flagella-associated protein 53 (61 kDa, Protein from human)
- Protein fam166b (30 kDa, Protein from human)
- Cilia- and flagella-associated protein 44 (214 kDa, Protein from human)
- Radial spoke head 14 homolog (38 kDa, Protein from human)
- Dynein light chain tctex-type 1 (12 kDa, Protein from human)
- Coiled-coil domain-containing protein 39 (110 kDa, Protein from human)
- Cytochrome b5 domain-containing protein 1 (26 kDa, Protein from human)
- Leucine-rich repeat-containing protein 34 (51 kDa, Protein from human)
- Sperm surface protein sp17 (17 kDa, Protein from human)
- Thioredoxin domain-containing protein 6 (36 kDa, Protein from human)
- Dynein light chain roadblock-type 2 (10 kDa, Protein from human)
- Dynein axonemal light chain 1 (21 kDa, Protein from human)
- Enkurin (29 kDa, Protein from human)
- Cilia- and flagella-associated protein 58 (103 kDa, Protein from human)
- Coiled-coil domain-containing protein 113 (44 kDa, Protein from human)
- Tubulin alpha-1a chain (50 kDa, Protein from human)
- Cilia- and flagella-associated protein 77 (33 kDa, Protein from human)
- Dynein axonemal intermediate chain 3 (103 kDa, Protein from human)
- Outer dynein arm-docking complex subunit 2 (115 kDa, Protein from human)
- Dynein axonemal heavy chain 2 (508 kDa, Protein from human)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Dynein axonemal heavy chain 1 (488 kDa, Protein from human)
- Axonemal dynein light intermediate polypeptide 1 (29 kDa, Protein from human)
- Dynein light chain tctex-type protein 2b (16 kDa, Protein from human)
- Cilia- and flagella-associated protein 251 (130 kDa, Protein from human)
- Tubulin beta-4b chain (49 kDa, Protein from human)
- Ef-hand domain-containing family member b (93 kDa, Protein from human)
- Dynein axonemal heavy chain 12 (454 kDa, Protein from human)
- Cilia- and flagella-associated protein 161 (34 kDa, Protein from human)
- Calmodulin-1 (16 kDa, Protein from human)
- Dynein regulatory complex protein 8 (29 kDa, Protein from human)
- Cilia- and flagella-associated protein 107 (23 kDa, Protein from human)
- Dynll1 (10 kDa, Protein from human)
- Dynein regulatory complex subunit 4 (56 kDa, Protein from human)
- Uncharacterized protein cfap68 (17 kDa, Protein from human)
- Dynein regulatory complex subunit 7 (103 kDa, Protein from human)
- Iq and ubiquitin-like domain-containing protein (92 kDa, Protein from human)
- Dynein regulatory complex protein 1 (87 kDa, Protein from human)
- Piercer of microtubule wall 1 protein (15 kDa, Protein from human)
- Probable inactive peptidyl-prolyl cis-trans isomerase-like 6 (35 kDa, Protein from human)
- Dpy30 domain-containing protein 2 (20 kDa, Protein from human)
- Rib43a-like with coiled-coils protein 2 (45 kDa, Protein from human)
- Cilia- and flagella-associated protein 144 (16 kDa, Protein from human)
- Radial spoke head protein 3 homolog (63 kDa, Protein from human)
- Cilia- and flagella-associated protein 95 (26 kDa, Protein from human)
- Cilia- and flagella-associated protein 141 (12 kDa, Protein from human)
- Parkin coregulated gene protein (29 kDa, Protein from human)
- Dynein regulatory complex subunit 5 (55 kDa, Protein from human)
- Cilia- and flagella-associated protein 52 (68 kDa, Protein from human)
- Radial spoke head protein 9 homolog (31 kDa, Protein from human)
- Dynein axonemal heavy chain 6 (476 kDa, Protein from human)
- Cilia- and flagella-associated protein 100 (71 kDa, Protein from human)
- Dynein light chain roadblock-type 1 (10 kDa, Protein from human)
- Outer dynein arm-docking complex subunit 4 (76 kDa, Protein from human)
- Dynein axonemal intermediate chain 4 (94 kDa, Protein from human)
- Dynein axonemal heavy chain 7 (461 kDa, Protein from human)
- Nucleoside diphosphate kinase homolog 5 (24 kDa, Protein from human)
- Cilia- and flagella-associated protein 45 (65 kDa, Protein from human)
- Tektin-1 (48 kDa, Protein from human)
- Calaxin (24 kDa, Protein from human)
- Cilia- and flagella-associated protein 91 (90 kDa, Protein from human)
- Cilia- and flagella-associated protein 57 (145 kDa, Protein from human)
- Unknown (6 kDa, Protein from human)
- Dynein axonemal heavy chain 9 (512 kDa, Protein from human)
- Cilia- and flagella-associated protein 299 (26 kDa, Protein from human)
- Protein fam166c (23 kDa, Protein from human)
- Cilia- and flagella-associated protein 276 (19 kDa, Protein from human)
- Morn repeat-containing protein 3 (27 kDa, Protein from human)
- Outer dynein arm-docking complex subunit 3 (69 kDa, Protein from human)
- Meiosis-specific nuclear structural protein 1 (60 kDa, Protein from human)
- Cilia- and flagella-associated protein 20 (22 kDa, Protein from human)
- Tetratricopeptide repeat protein 29 (55 kDa, Protein from human)
- Dynein axonemal heavy chain 10 (529 kDa, Protein from human)
Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state
Release date: Oct. 26, 2022
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 7qgg
Q-score: 0.5
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 7qgg
Q-score: 0.5
J Mol Biol (2022) 434 pp. 167801-167801 [ DOI: doi:10.1016/j.jmb.2022.167801 Pubmed: 36038000 ]
Sample:
- 40s ribosomal protein s7 (22 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s5 (22 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s21 (9 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l35a (12 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l28 (15 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s12 (14 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l10 (24 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l36 (12 kDa, Protein from Rattus norvegicus)
- Rna (121-mer) (38 kDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l34 (13 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s2 (31 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l27 (15 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s11 (18 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l9 (21 kDa, Protein from Rattus norvegicus)
- Ribosomal protein l15 (24 kDa, Protein from Rattus norvegicus)
- Water (18 Da, Ligand)
- 40s ribosomal protein s27 (9 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l35 (14 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l18a (20 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s15a (14 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s17 (15 kDa, Protein from Rattus norvegicus)
- Ubiquitin-like domain-containing protein (6 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein sa (32 kDa, Protein from Rattus norvegicus)
- Ribosomal protein l36a (12 kDa, Protein from Rattus norvegicus)
- Rna (76-mer) (24 kDa, RNA from Rattus norvegicus)
- Rna (4803-mer) (1 MDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l39 (6 kDa, Protein from Rattus norvegicus)
- Rps16 protein (16 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s23 (15 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s25 (13 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l32 (15 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s9 (22 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l10a (24 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s19 (16 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s24 (15 kDa, Protein from Rattus norvegicus)
- Rna (157-mer) (50 kDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l3 (46 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l21 (18 kDa, Protein from Rattus norvegicus)
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l41 (3 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l27a (16 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l23a (17 kDa, Protein from Rattus norvegicus)
- Rna (1872-mer) (604 kDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l8 (28 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l24 (17 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l5 (34 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s26 (13 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l29 (17 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l13a (23 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l26 (17 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l7 (30 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s13 (17 kDa, Protein from Rattus norvegicus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s20 (13 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l6 (33 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l4 (47 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s18 (17 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s15 (17 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l37a (10 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s14 (16 kDa, Protein from Rattus norvegicus)
- Ribosomal protein l37 (11 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s8 (24 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l14 (23 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l17 (21 kDa, Protein from Rattus norvegicus)
- Ala-ala-lys-ala (360 Da, Protein from Rattus norvegicus)
- 60s ribosomal protein l11 (20 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l31 (14 kDa, Protein from Rattus norvegicus)
- Rna (5'-d(p*()p*()p*()p*())-r(p*up*up*ap*cp*gp*gp*cp*gp*gp*up*()p*()p*()p*()p*()p*())-3') (6 kDa, RNA from Rattus norvegicus)
- 40s ribosomal protein s29 (6 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s6 (28 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l23 (14 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l7a (30 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s3 (26 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s10 (18 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s28 (7 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l38 (8 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l30 (12 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l13 (24 kDa, Protein from Rattus norvegicus)
- Ribosomal protein l19 (23 kDa, Protein from Rattus norvegicus)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s3a (30 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l18 (21 kDa, Protein from Rattus norvegicus)
- Rna (76-mer) (24 kDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l22 (14 kDa, Protein from Rattus norvegicus)
- Magnesium ion (24 Da, Ligand)
- Ribosome structure in the rat cortex-hippocampus derived neuronal rna granules. (Complex from Rattus norvegicus)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Rattus norvegicus)
Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
Release date: July 13, 2022
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 7qiw
Q-score: 0.686
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 7qiw
Q-score: 0.686
Cottilli P, Itoh Y, Nobe Y, Petrov AS, Lison P, Taoka M, Amunts A
Plant Commun. (2022) 3 pp. 100342-100342 [ Pubmed: 35643637 DOI: doi:10.1016/j.xplc.2022.100342 ]
Sample:
- 60s ribosomal protein el31 (13 kDa, Protein from Solanum lycopersicum)
- Ribos_l4_asso_c domain-containing protein (44 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el22 (13 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l27 (15 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l36 (12 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l18e/l15p domain-containing protein (20 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el43 (10 kDa, Protein from Solanum lycopersicum)
- 5s rrna (38 kDa, RNA from Solanum lycopersicum)
- Spermidine (145 Da, Ligand)
- 60s ribosomal protein ul13 (23 kDa, Protein from Solanum lycopersicum)
- Spermine (202 Da, Ligand)
- Similar to 60s ribosomal protein l35 (14 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l7ae domain-containing protein (12 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el42 (12 kDa, Protein from Solanum lycopersicum)
- Water (18 Da, Ligand)
- Ribosomal_l6e_n domain-containing protein (25 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l7ae domain-containing protein (29 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l10 (24 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el34 (13 kDa, Protein from Solanum lycopersicum)
- Thaliana 60s ribosomal protein l7 (28 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal subunit (Complex from Solanum lycopersicum)
- Potassium ion (39 Da, Ligand)
- Putative 60s ribosomal protein l27a-3-like (16 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l3 (44 kDa, Protein from Solanum lycopersicum)
- 5.8s rrna (53 kDa, RNA from Solanum lycopersicum)
- Kow domain-containing protein (16 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l38 (8 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el33 (12 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein ul6 (22 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l18a (21 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l19 (24 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el32 (15 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l37 (10 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el21 (18 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein ul14 (15 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l14e domain-containing protein (15 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el39 (6 kDa, Protein from Solanum lycopersicum)
- 25s rrna (1 MDa, RNA from Solanum lycopersicum)
- 60s ribosomal protein l13 (23 kDa, Protein from Solanum lycopersicum)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l29 (6 kDa, Protein from Solanum lycopersicum)
- 50s ribosomal protein l22, chloroplastic (19 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l15 (24 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein ul5 (20 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l28e domain-containing protein (16 kDa, Protein from Solanum lycopersicum)
- Trna (589 Da, RNA from Solanum lycopersicum)
- Magnesium ion (24 Da, Ligand)
- Trash domain-containing protein (18 kDa, Protein from Solanum lycopersicum)
- Ubiquitin-like domain-containing protein (14 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l8 (28 kDa, Protein from Solanum lycopersicum)
Late assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
Release date: May 4, 2022
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7pub
Q-score: 0.436
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7pub
Q-score: 0.436
Lenarcic T, Niemann M, Ramrath DJF, Calderaro S, Flugel T, Saurer M, Leibundgut M, Boehringer D, Prange C, Horn EK, Schneider A, Ban N
PNAS (2022) 119 [ Pubmed: 35042777 DOI: doi:10.1073/pnas.2114710118 ]
Sample:
- Mt-saf38 (69 kDa, Protein from Trypanosoma brucei brucei)
- Ms50 (131 kDa, Protein from Trypanosoma brucei brucei)
- Ms26 (51 kDa, Protein from Trypanosoma brucei brucei)
- Dna photolyase, putative (95 kDa, Protein from Trypanosoma brucei brucei)
- Ms59 (35 kDa, Protein from Trypanosoma brucei brucei)
- Unkg (1 kDa, Protein from Trypanosoma brucei brucei)
- Us15m (50 kDa, Protein from Trypanosoma brucei brucei)
- Bs6m (18 kDa, Protein from Trypanosoma brucei brucei)
- Ms72 (19 kDa, Protein from Trypanosoma brucei brucei)
- Us14m (19 kDa, Protein from Trypanosoma brucei brucei)
- Bs16m (22 kDa, Protein from Trypanosoma brucei brucei)
- Ms74 (8 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- 30s ribosomal protein s8, putative (32 kDa, Protein from Trypanosoma brucei brucei)
- Ms70 (21 kDa, Protein from Trypanosoma brucei brucei)
- Protein fyv4, mitochondrial (22 kDa, Protein from Trypanosoma brucei brucei)
- Ms37 (24 kDa, Protein from Trypanosoma brucei brucei)
- Phosphate ion (94 Da, Ligand)
- Ms35 (98 kDa, Protein from Trypanosoma brucei brucei)
- Ech_2 domain-containing protein (137 kDa, Protein from Trypanosoma brucei brucei)
- Ms53 (75 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Ms48 (201 kDa, Protein from Trypanosoma brucei brucei)
- 30s ribosomal protein s17, putative (35 kDa, Protein from Trypanosoma brucei brucei)
- Translation initiation factor if-2, putative (87 kDa, Protein from Trypanosoma brucei brucei)
- Ms62 (32 kDa, Protein from Trypanosoma brucei brucei)
- Ms55 (66 kDa, Protein from Trypanosoma brucei brucei)
- Ms52 (84 kDa, Protein from Trypanosoma brucei brucei)
- Unkl (1 kDa, Protein from Trypanosoma brucei brucei)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ms23 (36 kDa, Protein from Trypanosoma brucei brucei)
- Ms38 (28 kDa, Protein from Trypanosoma brucei brucei)
- Ms57 (45 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf7 (76 kDa, Protein from Trypanosoma brucei brucei)
- Us19m (28 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf6 (76 kDa, Protein from Trypanosoma brucei brucei)
- Unk (1 kDa, Protein from Trypanosoma brucei brucei)
- Ms22 (73 kDa, Protein from Trypanosoma brucei brucei)
- Rhodanese domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Ms71 (20 kDa, Protein from Trypanosoma brucei brucei)
- Us11m (37 kDa, Protein from Trypanosoma brucei brucei)
- Sod_fe_c domain-containing protein (48 kDa, Protein from Trypanosoma brucei brucei)
- Unkk (273 Da, Protein from Trypanosoma brucei brucei)
- Unke (4 kDa, Protein from Trypanosoma brucei brucei)
- Superoxide dismutase, putative (29 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf37 (37 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf39 (89 kDa, Protein from Trypanosoma brucei brucei)
- Late assembly intermediate of the trypanosoma brucei mitoribosomal small subunit (Complex from Trypanosoma brucei brucei)
- Ms58 (35 kDa, Protein from Trypanosoma brucei brucei)
- Ms49 (137 kDa, Protein from Trypanosoma brucei brucei)
- Ms54 (72 kDa, Protein from Trypanosoma brucei brucei)
- 9s rrna (198 kDa, RNA from Trypanosoma brucei brucei)
- Ms51 (95 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf22 (39 kDa, Protein from Trypanosoma brucei brucei)
- Us9m (50 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Ribosomal_s5_c domain-containing protein (50 kDa, Protein from Trypanosoma brucei brucei)
- Ms33 (21 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ms60 (34 kDa, Protein from Trypanosoma brucei brucei)
- Ms63 (31 kDa, Protein from Trypanosoma brucei brucei)
- Unkf (3 kDa, Protein from Trypanosoma brucei brucei)
- Ms56 (47 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf3 (106 kDa, Protein from Trypanosoma brucei brucei)
- Unk7 (3 kDa, Protein from Trypanosoma brucei brucei)
- Bs21m (23 kDa, Protein from Trypanosoma brucei brucei)
- Ms34 (28 kDa, Protein from Trypanosoma brucei brucei)
- Us12m (10 kDa, Protein from Trypanosoma brucei brucei)
- Lysm domain-containing protein (94 kDa, Protein from Trypanosoma brucei brucei)
- Us3m (9 kDa, Protein from Trypanosoma brucei brucei)
- Ms66 (29 kDa, Protein from Trypanosoma brucei brucei)
- Acyl transferase-like protein (60 kDa, Protein from Trypanosoma brucei brucei)
- Akap7_nls domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Ubiquitin-like domain-containing protein (26 kDa, Protein from Trypanosoma brucei brucei)
- Ms29 (57 kDa, Protein from Trypanosoma brucei brucei)
- Ms65 (30 kDa, Protein from Trypanosoma brucei brucei)
- Ms69 (21 kDa, Protein from Trypanosoma brucei brucei)
- Ms73 (11 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf9 (69 kDa, Protein from Trypanosoma brucei brucei)
- Unki (869 Da, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Bs18m (36 kDa, Protein from Trypanosoma brucei brucei)
- Ms61 (33 kDa, Protein from Trypanosoma brucei brucei)
Middle assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
Release date: March 2, 2022
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7pua
Q-score: 0.436
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7pua
Q-score: 0.436
Lenarcic T, Niemann M, Ramrath DJF, Calderaro S, Flugel T, Saurer M, Leibundgut M, Boehringer D, Prange C, Horn EK, Schneider A, Ban N
PNAS (2022) 119 [ Pubmed: 35042777 DOI: doi:10.1073/pnas.2114710118 ]
Sample:
- Mt-saf38 (69 kDa, Protein from Trypanosoma brucei brucei)
- Ms50 (131 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf5 (86 kDa, Protein from Trypanosoma brucei brucei)
- Ms26 (51 kDa, Protein from Trypanosoma brucei brucei)
- Dna photolyase, putative (95 kDa, Protein from Trypanosoma brucei brucei)
- Ms59 (35 kDa, Protein from Trypanosoma brucei brucei)
- Lmwpc domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Unkg (1 kDa, Protein from Trypanosoma brucei brucei)
- Unka (869 Da, Protein from Trypanosoma brucei brucei)
- Us15m (50 kDa, Protein from Trypanosoma brucei brucei)
- Acyl transferase-like protein, putative (60 kDa, Protein from Trypanosoma brucei brucei)
- Bs6m (18 kDa, Protein from Trypanosoma brucei brucei)
- Ms72 (19 kDa, Protein from Trypanosoma brucei brucei)
- Us14m (19 kDa, Protein from Trypanosoma brucei brucei)
- Bs16m (22 kDa, Protein from Trypanosoma brucei brucei)
- Unki (528 Da, Protein from Trypanosoma brucei brucei)
- Ms74 (8 kDa, Protein from Trypanosoma brucei brucei)
- 30s ribosomal protein s8, putative (32 kDa, Protein from Trypanosoma brucei brucei)
- Ms70 (21 kDa, Protein from Trypanosoma brucei brucei)
- Protein fyv4, mitochondrial (22 kDa, Protein from Trypanosoma brucei brucei)
- Ms37 (24 kDa, Protein from Trypanosoma brucei brucei)
- Phosphate ion (94 Da, Ligand)
- Ms35 (98 kDa, Protein from Trypanosoma brucei brucei)
- Unk (698 Da, Protein from Trypanosoma brucei brucei)
- Ms53 (75 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- 30s ribosomal protein s17, putative (35 kDa, Protein from Trypanosoma brucei brucei)
- Translation initiation factor if-2, putative (87 kDa, Protein from Trypanosoma brucei brucei)
- Ms62 (32 kDa, Protein from Trypanosoma brucei brucei)
- Ms55 (66 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf23 (38 kDa, Protein from Trypanosoma brucei brucei)
- Ms52 (84 kDa, Protein from Trypanosoma brucei brucei)
- Dihydroflavine-adenine dinucleotide (787 Da, Ligand)
- Ppr_long domain-containing protein (116 kDa, Protein from Trypanosoma brucei brucei)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ms23 (36 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf29 (20 kDa, Protein from Trypanosoma brucei brucei)
- Ms38 (28 kDa, Protein from Trypanosoma brucei brucei)
- 9s rrna (919 Da, RNA from Trypanosoma brucei brucei)
- Ms57 (45 kDa, Protein from Trypanosoma brucei brucei)
- S-(2-{[n-(2-hydroxy-4-{[hydroxy(oxido)phosphino]oxy}-3,3-dimethylbutanoyl)-beta-alanyl]amino}ethyl) decanethioate (496 Da, Ligand)
- Mt-saf7 (76 kDa, Protein from Trypanosoma brucei brucei)
- Us19m (28 kDa, Protein from Trypanosoma brucei brucei)
- Ms22 (73 kDa, Protein from Trypanosoma brucei brucei)
- Unkp (2 kDa, Protein from Trypanosoma brucei brucei)
- Rhodanese domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf27 (26 kDa, Protein from Trypanosoma brucei brucei)
- Ms71 (20 kDa, Protein from Trypanosoma brucei brucei)
- Us11m (37 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf37 (37 kDa, Protein from Trypanosoma brucei brucei)
- Acyl carrier protein (16 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf39 (89 kDa, Protein from Trypanosoma brucei brucei)
- Ms49 (137 kDa, Protein from Trypanosoma brucei brucei)
- Ms54 (72 kDa, Protein from Trypanosoma brucei brucei)
- 9s rrna (198 kDa, RNA from Trypanosoma brucei brucei)
- Mt-saf22 (39 kDa, Protein from Trypanosoma brucei brucei)
- Duf4379 domain-containing protein (16 kDa, Protein from Trypanosoma brucei brucei)
- Unkf (3 kDa, Protein from Trypanosoma brucei brucei)
- Us9m (50 kDa, Protein from Trypanosoma brucei brucei)
- Ms58 (35 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Ribosomal_s5_c domain-containing protein (50 kDa, Protein from Trypanosoma brucei brucei)
- Ms33 (21 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ms63 (31 kDa, Protein from Trypanosoma brucei brucei)
- Middle assembly intermediate of the trypanosoma brucei mitoribosomal small subunit (Complex from Trypanosoma brucei brucei)
- Ms56 (47 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf3 (106 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf31 (17 kDa, Protein from Trypanosoma brucei brucei)
- Bs21m (23 kDa, Protein from Trypanosoma brucei brucei)
- Ms34 (28 kDa, Protein from Trypanosoma brucei brucei)
- Unkd (1 kDa, Protein from Trypanosoma brucei brucei)
- Ms51 (93 kDa, Protein from Trypanosoma brucei brucei)
- Unkk (2 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf9 (69 kDa, Protein from Trypanosoma brucei brucei)
- Us12m (10 kDa, Protein from Trypanosoma brucei brucei)
- Lysm domain-containing protein (94 kDa, Protein from Trypanosoma brucei brucei)
- Us3m (9 kDa, Protein from Trypanosoma brucei brucei)
- Unkc (783 Da, Protein from Trypanosoma brucei brucei)
- Unkg (23 kDa, Protein from Trypanosoma brucei brucei)
- Unk8 (2 kDa, Protein from Trypanosoma brucei brucei)
- Ubiquitin-like domain-containing protein (26 kDa, Protein from Trypanosoma brucei brucei)
- Ms29 (57 kDa, Protein from Trypanosoma brucei brucei)
- Ms65 (30 kDa, Protein from Trypanosoma brucei brucei)
- Ms69 (21 kDa, Protein from Trypanosoma brucei brucei)
- Ms73 (11 kDa, Protein from Trypanosoma brucei brucei)
- Duf4460 domain-containing protein (76 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Bs18m (36 kDa, Protein from Trypanosoma brucei brucei)
- Mt-saf21 (39 kDa, Protein from Trypanosoma brucei brucei)
Leishmania Major mitochondrial ribosome
Release date: June 23, 2021
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7ane
Q-score: 0.321
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7ane
Q-score: 0.321
Soufari H, Waltz F, Parrot C, Durrieu-Gaillard S, Bochler A, Kuhn L, Sissler M, Hashem Y
PNAS (2020) 117 pp. 29851-29861 [ Pubmed: 33168716 DOI: doi:10.1073/pnas.2011301117 ]
Sample:
- Bl32m (9 kDa, Protein from Leishmania major)
- Us9m (39 kDa, Protein from Leishmania major)
- Bs18m (37 kDa, Protein from Leishmania major)
- Ms26 (49 kDa, Protein from Leishmania major)
- Us15m (50 kDa, Protein from Leishmania major)
- Bl19m (16 kDa, Protein from Leishmania major)
- Us14m (19 kDa, Protein from Leishmania major)
- Ms61 (33 kDa, Protein from Leishmania major)
- Ml73 (36 kDa, Protein from Leishmania major)
- Ml87 (22 kDa, Protein from Leishmania major)
- Ms69 (16 kDa, Protein from Leishmania major)
- Ms34 (29 kDa, Protein from Leishmania major)
- Ua (17 kDa, Protein from Leishmania major)
- Us19m (19 kDa, Protein from Leishmania major)
- Ml74 (39 kDa, Protein from Leishmania major)
- Ms51 (94 kDa, Protein from Leishmania major)
- Ms73 (11 kDa, Protein from Leishmania major)
- Mrp-l46 domain-containing protein (33 kDa, Protein from Leishmania major)
- Ms62 (27 kDa, Protein from Leishmania major)
- Us10m (92 kDa, Protein from Leishmania major)
- Bs6m (18 kDa, Protein from Leishmania major)
- Bl31m (21 kDa, Protein from Leishmania major)
- Ms23 (36 kDa, Protein from Leishmania major)
- Ml86 (21 kDa, Protein from Leishmania major)
- Ml84 (24 kDa, Protein from Leishmania major)
- Ms57 (45 kDa, Protein from Leishmania major)
- Ms52 (75 kDa, Protein from Leishmania major)
- Ul22m (32 kDa, Protein from Leishmania major)
- Ms33 (20 kDa, Protein from Leishmania major)
- Ml38 (57 kDa, Protein from Leishmania major)
- Ul30m (45 kDa, Protein from Leishmania major)
- Ribosomal_l18e/l15p domain-containing protein (43 kDa, Protein from Leishmania major)
- Ms50 (139 kDa, Protein from Leishmania major)
- Putative ribosomal protein l2 (43 kDa, Protein from Leishmania major)
- Us11m (40 kDa, Protein from Leishmania major)
- Ml49 (26 kDa, Protein from Leishmania major)
- 50s ribosomal protein l13-like protein (20 kDa, Protein from Leishmania major)
- C2h2-type domain-containing protein (20 kDa, Protein from Leishmania major)
- Ml97 (12 kDa, Protein from Leishmania major)
- Lim zinc-binding domain-containing protein (25 kDa, Protein from Leishmania major)
- Leishmania major mitochondrial riobosome (Complex from Leishmania major)
- Ribosomal_l16 domain-containing protein (18 kDa, Protein from Leishmania major)
- Putative superoxide dismutase (30 kDa, Protein from Leishmania major)
- Ml40 (33 kDa, Protein from Leishmania major)
- Putative 50s ribosomal protein l17 (35 kDa, Protein from Leishmania major)
- Us8m (35 kDa, Protein from Leishmania major)
- Ribosomal_l9 domain-containing protein (30 kDa, Protein from Leishmania major)
- Bl33m (13 kDa, Protein from Leishmania major)
- Ml99 (13 kDa, Protein from Leishmania major)
- Ms63 (33 kDa, Protein from Leishmania major)
- Ml88 (22 kDa, Protein from Leishmania major)
- Peptidyl-prolyl cis-trans isomerase (25 kDa, Protein from Leishmania major)
- Bs16m (22 kDa, Protein from Leishmania major)
- Bl27m (21 kDa, Protein from Leishmania major)
- Ml75 (39 kDa, Protein from Leishmania major)
- Protein fyv4, mitochondrial (22 kDa, Protein from Leishmania major)
- Ms22 (73 kDa, Protein from Leishmania major)
- Ml82 (37 kDa, Protein from Leishmania major)
- Ms60 (35 kDa, Protein from Leishmania major)
- Ml79 (33 kDa, Protein from Leishmania major)
- Ml53 (35 kDa, Protein from Leishmania major)
- Ms37 (24 kDa, Protein from Leishmania major)
- Ub (5 kDa, Protein from Leishmania major)
- Ul24m (53 kDa, Protein from Leishmania major)
- Large ribosomal rna (6 MDa, RNA from Leishmania major)
- Ms29 (54 kDa, Protein from Leishmania major)
- Bs21m (22 kDa, Protein from Leishmania major)
- Bl21m (20 kDa, Protein from Leishmania major)
- Ubiquitin-like domain-containing protein (27 kDa, Protein from Leishmania major)
- Ul10m (22 kDa, Protein from Leishmania major)
- Ml41 (22 kDa, Protein from Leishmania major)
- Putative ribosomal protein l11 (40 kDa, Protein from Leishmania major)
- L51_s25_ci-b8 domain-containing protein (31 kDa, Protein from Leishmania major)
- Ml94 (17 kDa, Protein from Leishmania major)
- Bl28m (27 kDa, Protein from Leishmania major)
- Ms72 (19 kDa, Protein from Leishmania major)
- Ms35 (99 kDa, Protein from Leishmania major)
- Ul29m (54 kDa, Protein from Leishmania major)
- Ml42 (22 kDa, Protein from Leishmania major)
- Ribosomal_s5_c domain-containing protein (49 kDa, Protein from Leishmania major)
- Ml100 (146 kDa, Protein from Leishmania major)
- Ms56 (43 kDa, Protein from Leishmania major)
- Ms43 (51 kDa, Protein from Leishmania major)
- Putative ribosomal protein l14 (21 kDa, Protein from Leishmania major)
- Ml89 (21 kDa, Protein from Leishmania major)
- Ml59/64 (28 kDa, Protein from Leishmania major)
- Zinc ion (65 Da, Ligand)
- Akap7_nls domain-containing protein (31 kDa, Protein from Leishmania major)
- Ms53 (72 kDa, Protein from Leishmania major)
- Excreted/secreted protein 15 (92 kDa, Protein from Leishmania major)
- Ul23m (28 kDa, Protein from Leishmania major)
- Ml95 (18 kDa, Protein from Leishmania major)
- Ms66 (44 kDa, Protein from Leishmania major)
- Ml96 (16 kDa, Protein from Leishmania major)
- Ml52 (29 kDa, Protein from Leishmania major)
- Ml63 (18 kDa, Protein from Leishmania major)
- Us3m (10 kDa, Protein from Leishmania major)
- Bl20m (22 kDa, Protein from Leishmania major)
- Bl36m (21 kDa, Protein from Leishmania major)
- Ul4m (49 kDa, Protein from Leishmania major)
- Ms48 (199 kDa, Protein from Leishmania major)
- Ml93 (18 kDa, Protein from Leishmania major)
- Ms59 (35 kDa, Protein from Leishmania major)
- Ml85 (27 kDa, Protein from Leishmania major)
- Ml70 (50 kDa, Protein from Leishmania major)
- Bl35m (18 kDa, Protein from Leishmania major)
- Ribosomal protein l3-like protein (53 kDa, Protein from Leishmania major)
- Ml68 (65 kDa, Protein from Leishmania major)
- Ml69 (54 kDa, Protein from Leishmania major)
- Ms65 (30 kDa, Protein from Leishmania major)
- Ud (8 kDa, Protein from Leishmania major)
- Ml80 (27 kDa, Protein from Leishmania major)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Ms70 (21 kDa, Protein from Leishmania major)
- Ml72 (56 kDa, Protein from Leishmania major)
- Peptidyl-prolyl cis-trans isomerase (28 kDa, Protein from Leishmania major)
- 30s ribosomal protein s17-like protein (36 kDa, Protein from Leishmania major)
- Ml98 (13 kDa, Protein from Leishmania major)
- Ms47 (131 kDa, Protein from Leishmania major)
- Ms71 (19 kDa, Protein from Leishmania major)
- Ms55 (65 kDa, Protein from Leishmania major)
- Ms58 (36 kDa, Protein from Leishmania major)
- Ml76 (38 kDa, Protein from Leishmania major)
- Rhodanese domain-containing protein (30 kDa, Protein from Leishmania major)
- Magnesium ion (24 Da, Ligand)
- Uc (12 kDa, Protein from Leishmania major)
- Ms49 (133 kDa, Protein from Leishmania major)