Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research. We appreciate your responses prior to closing of the survey on Monday 17th June.
Edit your search query here and hit Return to execute it:
sample_name:"Ribosomal_S10 domain-containing protein"
Small subunit of the Chlamydomonas reinhardtii mitoribosome
Release date: June 14, 2023
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7pkq
Q-score: 0.231
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7pkq
Q-score: 0.231
Waltz F, Salinas-Giege T, Englmeier R, Meichel H, Soufari H, Kuhn L, Pfeffer S, Foerster F, Engel BD, Giege P, Drouard L, Hashem Y
To Be Published
Sample:
- Us11m (23 kDa, Protein from Chlamydomonas reinhardtii)
- Us2m (53 kDa, Protein from Chlamydomonas reinhardtii)
- Us4m (43 kDa, Protein from Chlamydomonas reinhardtii)
- Ms106 (51 kDa, Protein from Chlamydomonas reinhardtii)
- Us15m (34 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein s14 (13 kDa, Protein from Chlamydomonas reinhardtii)
- S5 drbm domain-containing protein (38 kDa, Protein from Chlamydomonas reinhardtii)
- Us8m (44 kDa, Protein from Chlamydomonas reinhardtii)
- Ms29 (49 kDa, Protein from Chlamydomonas reinhardtii)
- Unk5 (9 kDa, Protein from Chlamydomonas smithii)
- Ms33 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Ms26 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Ms35 (88 kDa, Protein from Chlamydomonas reinhardtii)
- S2 rrna (68 kDa, RNA from Chlamydomonas reinhardtii)
- Us19m (12 kDa, Protein from Chlamydomonas reinhardtii)
- Ms45-insert (36 kDa, Protein from Chlamydomonas smithii)
- Unk4 (6 kDa, Protein from Chlamydomonas smithii)
- Unk3 (4 kDa, Protein from Chlamydomonas smithii)
- Bs16m (10 kDa, Protein from Chlamydomonas reinhardtii)
- 30s ribosomal protein s9, chloroplastic (45 kDa, Protein from Chlamydomonas reinhardtii)
- Bs1m (26 kDa, Protein from Chlamydomonas reinhardtii)
- Unk6 (48 kDa, Protein from Chlamydomonas smithii)
- Bs18m (36 kDa, Protein from Chlamydomonas reinhardtii)
- Ms31/46 (15 kDa, Protein from Chlamydomonas smithii)
- Unk2 (12 kDa, Protein from Chlamydomonas smithii)
- Ms34 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Ms107 (43 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_s3_c domain-containing protein (50 kDa, Protein from Chlamydomonas reinhardtii)
- S1 rrna (32 kDa, RNA from Chlamydomonas reinhardtii)
- Us7m,ribosomal_s7 domain-containing protein,ribosomal_s7 domain-containing protein,ribosomal_s7 domain-containing protein (32 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein s6 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ms23 (20 kDa, Protein from Chlamydomonas reinhardtii)
- Small subunit of the chlamydomonas reinhardtii mitochondrial ribosome (Complex from Chlamydomonas reinhardtii)
- Ms45 (102 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein s13 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_s10 domain-containing protein (61 kDa, Protein from Chlamydomonas reinhardtii)
- Plastid-specific ribosomal protein 4 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Us12m (14 kDa, Protein from Chlamydomonas reinhardtii)
- S3 rrna (126 kDa, RNA from Chlamydomonas reinhardtii)
- S4 rrna (133 kDa, RNA from Chlamydomonas smithii)
- Unk1 (2 kDa, Protein from Chlamydomonas smithii)
- Us17m (22 kDa, Protein from Chlamydomonas reinhardtii)
- Ms105 (28 kDa, Protein from Chlamydomonas reinhardtii)
Specific features and methylation sites of a plant 80S ribosome
Release date: Aug. 3, 2022
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 7qiz
Q-score: 0.666
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 7qiz
Q-score: 0.666
Cottilli P, Itoh Y, Nobe Y, Petrov AS, Lison P, Taoka M, Amunts A
Plant Commun. (2022) 3 pp. 100342-100342 [ Pubmed: 35643637 DOI: doi:10.1016/j.xplc.2022.100342 ]
Sample:
- 60s ribosomal protein el31 (13 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s30 (6 kDa, Protein from Solanum lycopersicum)
- Spermine (202 Da, Ligand)
- 60s ribosomal protein el42 (12 kDa, Protein from Solanum lycopersicum)
- Beta-d-glucopyranose (180 Da, Ligand)
- Kow domain-containing protein (16 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l38 (8 kDa, Protein from Solanum lycopersicum)
- Pectinesterase (23 kDa, Protein from Solanum lycopersicum)
- 40s body ribosomal protein us4 (23 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s24 (15 kDa, Protein from Solanum lycopersicum)
- 40s body ribosomal protein us12 (15 kDa, Protein from Solanum lycopersicum)
- S5 drbm domain-containing protein (30 kDa, Protein from Solanum lycopersicum)
- 50s ribosomal protein l22, chloroplastic (19 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein ul5 (20 kDa, Protein from Solanum lycopersicum)
- Trna (589 Da, RNA from Solanum lycopersicum)
- Trash domain-containing protein (18 kDa, Protein from Solanum lycopersicum)
- Ribos_l4_asso_c domain-containing protein (44 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l18e/l15p domain-containing protein (20 kDa, Protein from Solanum lycopersicum)
- 5s rrna (38 kDa, RNA from Solanum lycopersicum)
- Spermidine (145 Da, Ligand)
- Similar to 60s ribosomal protein l35 (14 kDa, Protein from Solanum lycopersicum)
- Water (18 Da, Ligand)
- 60s ribosomal protein l10 (24 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s3a (29 kDa, Protein from Solanum lycopersicum)
- Mitogen-activated protein kinase (35 kDa, Protein from Solanum lycopersicum)
- Thaliana 60s ribosomal protein l7 (28 kDa, Protein from Solanum lycopersicum)
- Ribosomal_s10 domain-containing protein (13 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l8 (28 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l18a (21 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el32 (15 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein us9 (16 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l13 (23 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s7 (22 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el22 (13 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l36 (12 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l6e_n domain-containing protein (25 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s25 (11 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el34 (13 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein es28 (7 kDa, Protein from Solanum lycopersicum)
- Potassium ion (39 Da, Ligand)
- 60s ribosomal protein el30 (12 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein us19 (17 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l18e/l15p domain-containing protein (16 kDa, Protein from Solanum lycopersicum)
- 5.8s rrna (53 kDa, RNA from Solanum lycopersicum)
- 40s ribosomal protein s6 (28 kDa, Protein from Solanum lycopersicum)
- Ubiquitin (14 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el21 (18 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l14e domain-containing protein (15 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el39 (6 kDa, Protein from Solanum lycopersicum)
- 25s rrna (1 MDa, RNA from Solanum lycopersicum)
- 40s ribosomal protein us13 (17 kDa, Protein from Solanum lycopersicum)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s27 (9 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l15 (24 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l28e domain-containing protein (16 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el43 (10 kDa, Protein from Solanum lycopersicum)
- Kh type-2 domain-containing protein (26 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l27 (15 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l41 (3 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein sa (32 kDa, Protein from Solanum lycopersicum)
- 80s ribosome (Complex from Solanum lycopersicum)
- Ribosomal_l7ae domain-containing protein (29 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Solanum lycopersicum)
- Ribosomal_s17_n domain-containing protein (17 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s17 (16 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein us14 (6 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein es19 (16 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l3 (44 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s21 (9 kDa, Protein from Solanum lycopersicum)
- S10_plectin domain-containing protein (19 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el33 (12 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s8 (24 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein ul6 (22 kDa, Protein from Solanum lycopersicum)
- 30s ribosomal protein s15, chloroplastic (17 kDa, Protein from Solanum lycopersicum)
- 1,4-diaminobutane (88 Da, Ligand)
- Ribosomal protein l19 (24 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l37 (10 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein s14 (16 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein ul14 (15 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l29 (6 kDa, Protein from Solanum lycopersicum)
- 18s (583 kDa, RNA from Solanum lycopersicum)
- Trna_1 (4 kDa, RNA from Solanum lycopersicum)
- 40s ribosomal protein s15a-1 (14 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s4 (29 kDa, Protein from Solanum lycopersicum)
- Magnesium ion (24 Da, Ligand)
- Ribosomal_s7 domain-containing protein (23 kDa, Protein from Solanum lycopersicum)
- Mrna (895 Da, RNA from Solanum lycopersicum)
- 40s ribosomal protein s26 (14 kDa, Protein from Solanum lycopersicum)
Specific features and methylation sites of a plant ribosome
Release date: June 15, 2022
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 7qiy
Q-score: 0.646
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 7qiy
Q-score: 0.646
Cottilli P, Itoh Y, Nobe Y, Petrov AS, Lison P, Taoka M, Amunts A
Plant Commun. (2022) 3 pp. 100342-100342 [ Pubmed: 35643637 DOI: doi:10.1016/j.xplc.2022.100342 ]
Sample:
- 40s head ribosomal protein es19 (16 kDa, Protein from Solanum lycopersicum)
- 40s head ribosomal subunit (Complex from Solanum lycopersicum)
- 40s ribosomal protein s29 (6 kDa, Protein from Solanum lycopersicum)
- Water (18 Da, Ligand)
- Beta-d-glucopyranose (180 Da, Ligand)
- 40s ribosomal protein s25 (11 kDa, Protein from Solanum lycopersicum)
- Mitogen-activated protein kinase (35 kDa, Protein from Solanum lycopersicum)
- Potassium ion (39 Da, Ligand)
- 40s head ribosomal protein es28 (7 kDa, Protein from Solanum lycopersicum)
- 40s head ribosomal protein us19 (17 kDa, Protein from Solanum lycopersicum)
- S10_plectin domain-containing protein (19 kDa, Protein from Solanum lycopersicum)
- 40s head ribosomal protein us13 (17 kDa, Protein from Solanum lycopersicum)
- Trna (4 kDa, RNA from Solanum lycopersicum)
- Ribosomal_s10 domain-containing protein (13 kDa, Protein from Solanum lycopersicum)
- 1,4-diaminobutane (88 Da, Ligand)
- 40s head ribosomal protein us9 (16 kDa, Protein from Solanum lycopersicum)
- Zinc ion (65 Da, Ligand)
- 18s rrna head (582 kDa, RNA from Solanum lycopersicum)
- 40s ribosomal protein s17 (16 kDa, Protein from Solanum lycopersicum)
- Magnesium ion (24 Da, Ligand)
- Kh type-2 domain-containing protein (26 kDa, Protein from Solanum lycopersicum)
- Ribosomal_s7 domain-containing protein (23 kDa, Protein from Solanum lycopersicum)
- Mrna (895 Da, RNA from Solanum lycopersicum)
Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
Release date: July 7, 2021
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7nwi
Q-score: 0.5
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7nwi
Q-score: 0.5
Powers KT, Stevenson-Jones F, Yadav SKN, Amthor B, Bufton JC, Borucu U, Shen D, Becker JP, Lavysh D, Hentze MW, Kulozik AE, Neu-Yilik G, Schaffitzel C
Nucleic Acids Res (2021) 49 pp. 7665-7679 [ Pubmed: 34157102 DOI: doi:10.1093/nar/gkab532 ]
Sample:
- Ribosomal protein s15a (15 kDa, Protein from Rabbit)
- Ribosomal protein s23 (15 kDa, Protein from Rabbit)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Rabbit)
- Ribosomal protein us14 (6 kDa, Protein from Rabbit)
- 40s ribosomal protein s8 (24 kDa, Protein from Rabbit)
- Blasticidin s (422 Da, Ligand)
- S21 (9 kDa, Protein from Rabbit)
- S4 (29 kDa, Protein from Rabbit)
- 60s ribosomal protein l6 (33 kDa, Protein from Rabbit)
- 60s ribosomal protein l4 (47 kDa, Protein from Rabbit)
- Ul23 (17 kDa, Protein from Rabbit)
- Ribosomal protein l14 (23 kDa, Protein from Rabbit)
- 60s ribosomal protein l10 (24 kDa, Protein from Rabbit)
- 40s ribosomal protein s25 (13 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Rabbit)
- Ul30 (29 kDa, Protein from Rabbit)
- 40s ribosomal protein sa (32 kDa, Protein from Rabbit)
- 40s ribosomal protein s11 (18 kDa, Protein from Rabbit)
- Ribosomal_s10 domain-containing protein (11 kDa, Protein from Rabbit)
- 60s ribosomal protein l7a (27 kDa, Protein from Rabbit)
- Ribosomal protein s5 (23 kDa, Protein from Rabbit)
- S17 (14 kDa, Protein from Rabbit)
- 60s ribosomal protein l19 (23 kDa, Protein from Rabbit)
- 60s ribosomal protein l29 (26 kDa, Protein from Rabbit)
- Ul15 (17 kDa, Protein from Rabbit)
- 40s ribosomal protein s30 (14 kDa, Protein from Rabbit)
- S27a (7 kDa, Protein from Rabbit)
- Ribosomal protein el39 (6 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Rabbit)
- Ribosomal protein l37 (11 kDa, Protein from Rabbit)
- Ribosomal protein us15 (17 kDa, Protein from Rabbit)
- Sec61beta (1 kDa, Protein from Rabbit)
- 28s ribosomal rna+blas (1 MDa, RNA from Rabbit)
- 40s ribosomal protein s9 (22 kDa, Protein from Rabbit)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- S14 (18 kDa, Protein from Rabbit)
- Low quality protein: 60s ribosomal protein l36a (16 kDa, Protein from Rabbit)
- El32 (15 kDa, Protein from Rabbit)
- Ribosomal protein el43 (10 kDa, Protein from Rabbit)
- 40s ribosomal protein s28 (7 kDa, Protein from Rabbit)
- Ribosomal_l18e/l15p domain-containing protein (21 kDa, Protein from Rabbit)
- Ribosomal protein rack1 (34 kDa, Protein from Rabbit)
- 40s ribosomal protein s24 (17 kDa, Protein from Rabbit)
- 60s ribosomal protein l36 (13 kDa, Protein from Rabbit)
- L13 (24 kDa, Protein from Rabbit)
- Mammalian pre-termination 80s ribosome with empty-a site bound by blasticidin s (3 MDa, Complex from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Rabbit)
- S19 (15 kDa, Protein from Rabbit)
- L18a (20 kDa, Protein from Rabbit)
- El14 (13 kDa, Protein from Rabbit)
- 40s ribosomal protein us19 (17 kDa, Protein from Rabbit)
- Ribosomal protein es7 (21 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Ul3 (46 kDa, Protein from Rabbit)
- S10_plectin domain-containing protein (11 kDa, Protein from Rabbit)
- El21 (18 kDa, Protein from Rabbit)
- 18s ribosomal rna (573 kDa, RNA from Rabbit)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- 40s ribosomal protein s3a (29 kDa, Protein from Rabbit)
- L13a (23 kDa, Protein from Rabbit)
- Ul29 (14 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- P-site trna (24 kDa, RNA from Rabbit)
- L38 (8 kDa, Protein from Rabbit)
- L12 (17 kDa, Protein from Rabbit)
- Mrna (3 kDa, RNA from Rabbit)
- El31 (12 kDa, Protein from Rabbit)
- 40s ribosomal protein s2 (27 kDa, Protein from Rabbit)
- El30 (12 kDa, Protein from Rabbit)
- 40s ribosomal protein s26 (13 kDa, Protein from Rabbit)
- L17 (17 kDa, Protein from Rabbit)
- 60s ribosomal protein l40 (14 kDa, Protein from Rabbit)
- Ribosomal protein us13 (16 kDa, Protein from Rabbit)
- El33 (12 kDa, Protein from Rabbit)
- L9 (21 kDa, Protein from Rabbit)
- Ribosomal protein l11 (20 kDa, Protein from Rabbit)
- 60s ribosomal protein l34 (14 kDa, Protein from Rabbit)
- 60s ribosomal protein l24-like protein (15 kDa, Protein from Rabbit)
- 60s ribosomal protein l22 (14 kDa, Protein from Rabbit)
- L8 (26 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (30 kDa, Protein from Rabbit)
- Ribosomal protein l26 (15 kDa, Protein from Rabbit)
- 40s ribosomal protein s3 (31 kDa, Protein from Rabbit)
- El28 (15 kDa, Protein from Rabbit)
- 40s ribosomal protein s12 (13 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- Rps16 protein (17 kDa, Protein from Rabbit)
Release date: Dec. 30, 2020
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7a01
Q-score: 0.37
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7a01
Q-score: 0.37
Abaeva IS, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova TV, Hashem Y, Hellen CUT
Cell Rep (2020) 33 pp. 108476-108476 [ DOI: doi:10.1016/j.celrep.2020.108476 Pubmed: 33296660 ]
Sample:
- Ribosomal protein s23 (15 kDa, Protein from Rabbit)
- Ribosomal protein us14 (6 kDa, Protein from Rabbit)
- Uncharacterized protein (14 kDa, Protein from Rabbit)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (7 kDa, Protein from Rabbit)
- Ribosomal protein us19 (15 kDa, Protein from Rabbit)
- Complex between 80s ribosome and halv igr ires (Complex)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- Ribosomal protein l10 (predicted) (11 kDa, Protein from Rabbit)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Rabbit)
- 40s ribosomal protein s27a (21 kDa, Protein from Rabbit)
- Ribosomal protein l24 (7 kDa, Protein from Rabbit)
- Ul4 (41 kDa, Protein from Rabbit)
- Ribosomal protein el39 (6 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Rabbit)
- 40s ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_s10 domain-containing protein (11 kDa, Protein from Rabbit)
- Ul3 (45 kDa, Protein from Rabbit)
- Ribosomal protein s3 (25 kDa, Protein from Rabbit)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- S5 drbm domain-containing protein (24 kDa, Protein from Rabbit)
- Halastavi arva rna virus (Complex from Halastavi arva RNA virus)
- 40s ribosomal protein s24 (14 kDa, Protein from Rabbit)
- Uncharacterized protein (17 kDa, Protein from Rabbit)
- 60s ribosomal protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Rabbit)
- Ribosomal protein s11 (17 kDa, Protein from Rabbit)
- Ribosomal protein rack1 (34 kDa, Protein from Rabbit)
- 60s ribosomal protein el8 (27 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Rabbit)
- El32 (15 kDa, Protein from Rabbit)
- Ribosomal protein el43 (10 kDa, Protein from Rabbit)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Rabbit)
- 60s ribosomal protein l6 (22 kDa, Protein from Rabbit)
- Uncharacterized protein (8 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (8 kDa, Protein from Rabbit)
- Ribosomal protein us15 (17 kDa, Protein from Rabbit)
- Uncharacterized protein (14 kDa, Protein from Rabbit)
- Ul30 (26 kDa, Protein from Rabbit)
- Ribosomal protein l11 (19 kDa, Protein from Rabbit)
- Ribosomal protein (24 kDa, Protein from Rabbit)
- S10_plectin domain-containing protein (11 kDa, Protein from Rabbit)
- 60s ribosomal protein l13 (24 kDa, Protein from Rabbit)
- Ribosomal protein l10 (predicted) (11 kDa, Protein from Rabbit)
- 40s ribosomal protein es26 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Rabbit)
- Uncharacterized protein (15 kDa, Protein from Rabbit)
- 40s ribosomal protein s8 (24 kDa, Protein from Rabbit)
- Uncharacterized protein (13 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Rabbit)
- Ribosomal protein l37 (10 kDa, Protein from Rabbit)
- Ribosomal protein l14 (16 kDa, Protein from Rabbit)
- 40s ribosomal protein s4,40s ribosomal protein s4 (29 kDa, Protein from Rabbit)
- Ribosomal protein s15a (14 kDa, Protein from Rabbit)
- 40s_sa_c domain-containing protein (23 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (27 kDa, Protein from Rabbit)
- Ul29 (14 kDa, Protein from Rabbit)
- 40s ribosomal protein s12 (13 kDa, Protein from Rabbit)
- 60s ribosomal protein l36 (11 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Uncharacterized protein (15 kDa, Protein from Rabbit)
- Uncharacterized protein (14 kDa, Protein from Rabbit)
- Uncharacterized protein (21 kDa, Protein from Rabbit)
- Internal ribosome entry site (48 kDa, RNA from Halastavi arva RNA virus)
- Complex between 80s ribosome and halv igr ires (Complex from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Rabbit)
- El34 (12 kDa, Protein from Rabbit)
- El31 (12 kDa, Protein from Rabbit)
- 60s ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Rabbit)
- Ribosomal protein l30 (10 kDa, Protein from Rabbit)
- Ribosomal protein us13 (16 kDa, Protein from Rabbit)
- 40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Rabbit)
- El42 (12 kDa, Protein from Rabbit)
- Ribosomal_l6e_n domain-containing protein (4 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- 40s ribosomal protein es30 (5 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Rabbit)
- El14 (13 kDa, Protein from Rabbit)
- Ribosomal protein s5 (21 kDa, Protein from Rabbit)
- 60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (26 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- 18s ribosomal rna (580 kDa, RNA from Rabbit)
- Ul15 (16 kDa, Protein from Rabbit)
Release date: Dec. 23, 2020
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6zvk
Q-score: 0.421
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6zvk
Q-score: 0.421
Abaeva IS, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova TV, Hashem Y, Hellen CUT
Cell Rep (2020) 33 pp. 108476-108476 [ DOI: doi:10.1016/j.celrep.2020.108476 Pubmed: 33296660 ]
Sample:
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Internal ribosome entry site (48 kDa, RNA from Halastavi arva RNA virus)
- 60s ribosomal protein l29 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (11 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el8 (27 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_s10 domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosome (Complex from Oryctolagus cuniculus)
- Uncharacterized protein (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us19 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es31 (8 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein es26 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Complex between 870s ribosome and halv igr ires (Complex)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- Halv igr ires (Complex from Halastavi arva RNA virus)
- Ribosomal_l6e_n domain-containing protein (4 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us9 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es30 (5 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el28 (14 kDa, Protein from Oryctolagus cuniculus)
- S5 drbm domain-containing protein (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us13 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s_sa_c domain-containing protein (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
Release date: April 8, 2020
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 6yan
Q-score: 0.351
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 6yan
Q-score: 0.351
Simonetti A, Guca E, Bochler A, Kuhn L, Hashem Y
Cell Rep (2020) 31 pp. 107497-107497 [ Pubmed: 32268096 DOI: doi:10.1016/j.celrep.2020.03.061 ]
Sample:
- Ribosomal protein us14 (6 kDa, Protein from Rabbit)
- Ribosomal protein es31 (8 kDa, Protein from Rabbit)
- Ribosomal protein s11 (18 kDa, Protein from Rabbit)
- Ribosomal protein es7 (21 kDa, Protein from Rabbit)
- Ribosomal protein es25 (8 kDa, Protein from Rabbit)
- 40s ribosomal protein sa (23 kDa, Protein from Rabbit)
- Ribosomal protein es28 (7 kDa, Protein from Rabbit)
- Ribosomal protein rack1 (34 kDa, Protein from Rabbit)
- Ribosomal protein s15 (15 kDa, Protein from Rabbit)
- 40s ribosomal protein s4 (29 kDa, Protein from Rabbit)
- 18s ribosomal rna (601 kDa, RNA from Rabbit)
- Ls48s ic (Complex from Oryctolagus cuniculus)
- 40s ribosomal protein us13 (16 kDa, Protein from Rabbit)
- 40s ribosomal protein us11 (14 kDa, Protein from Rabbit)
- Ribosomal protein es17 (14 kDa, Protein from Rabbit)
- 40s ribosomal protein es26 (11 kDa, Protein from Rabbit)
- 40s ribosomal protein us5 (24 kDa, Protein from Rabbit)
- Histone 4 mrna (Complex from Mus musculus)
- 40s ribosomal protein es30 (6 kDa, Protein from Rabbit)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Rabbit)
- Eukaryotic translation initiation factor 2 subunit 1 (30 kDa, Protein from Rabbit)
- 40s ribosomal protein s21 (8 kDa, Protein from Rabbit)
- Initiator methionylated trna (24 kDa, RNA from Rabbit)
- Ribosomal protein s15a (14 kDa, Protein from Rabbit)
- 40s ribosomal protein es10 (11 kDa, Protein from Rabbit)
- Eukaryotic translation initiation factor 2 subunit gamma (45 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (27 kDa, Protein from Rabbit)
- 40s ribosomal protein es19 (15 kDa, Protein from Rabbit)
- Ls48s ic with histone 4 mrna (Complex)
- 40s ribosomal protein s12 (13 kDa, Protein from Rabbit)
- Ribosomal protein s5 (21 kDa, Protein from Rabbit)
- Histone 4 (h4) mrna (11 kDa, RNA from Mus musculus)
- 40s ribosomal protein us12 (15 kDa, Protein from Rabbit)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- Ribosomal protein us15 (17 kDa, Protein from Rabbit)
- Ribosomal_s10 domain-containing protein (11 kDa, Protein from Rabbit)
- Ribosomal protein us9 (15 kDa, Protein from Rabbit)
- 40s ribosomal protein s24 (14 kDa, Protein from Rabbit)
- Ribosomal protein s3 (25 kDa, Protein from Rabbit)
- Ribosomal protein es1 (24 kDa, Protein from Rabbit)
- 40s ribosomal protein s27 (9 kDa, Protein from Rabbit)
- 40s ribosomal protein s8 (23 kDa, Protein from Rabbit)
Rabbit 80S ribosome stalled on a poly(A) tail
Release date: Dec. 4, 2019
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6sgc
Q-score: 0.575
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6sgc
Q-score: 0.575
Chandrasekaran V, Juszkiewicz S, Choi J, Puglisi JD, Brown A, Shao S, Ramakrishnan V, Hegde RS
Nat Struct Mol Biol (2019) 26 pp. 1132-1140 [ DOI: doi:10.1038/s41594-019-0331-x Pubmed: 31768042 ]
Sample:
- Poly-lysine nascent chain (2 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- Es17 (15 kDa, Protein from Rabbit)
- 40s ribosomal protein s7 (22 kDa, Protein from Rabbit)
- Ribosome (Complex from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l14 (23 kDa, Protein from Rabbit)
- 60s ribosomal protein l10 (24 kDa, Protein from Rabbit)
- 60s ribosomal protein l36 (12 kDa, Protein from Rabbit)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Rabbit)
- Ribosomal protein s5 (22 kDa, Protein from Rabbit)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Rabbit)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Rabbit)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- Es13 (17 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- 40s ribosomal protein s30 (14 kDa, Protein from Rabbit)
- Polya mrna (Complex from Homo sapiens)
- El21 (18 kDa, Protein from Rabbit)
- Ribosomal protein l37 (11 kDa, Protein from Rabbit)
- Ribosomal protein s28 (7 kDa, Protein from Rabbit)
- Spermidine (145 Da, Ligand)
- Ribosomal protein s27a (18 kDa, Protein from Rabbit)
- Trash domain-containing protein (17 kDa, Protein from Rabbit)
- Ribosomal protein s15a (14 kDa, Protein from Rabbit)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Rabbit)
- Rabbit 80s ribosome stalled on polya mrna (4 MDa, Complex)
- 40s ribosomal protein s6 (28 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (22 kDa, Protein from Rabbit)
- Ribosomal protein (24 kDa, Protein from Rabbit)
- Ribosomal_s10 domain-containing protein (13 kDa, Protein from Rabbit)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- Ribosomal_s13_n domain-containing protein (17 kDa, Protein from Rabbit)
- Us5 (26 kDa, Protein from Rabbit)
- 40s ribosomal protein s27 (9 kDa, Protein from Rabbit)
- 40s ribosomal protein s12 (14 kDa, Protein from Rabbit)
- Es25 (13 kDa, Protein from Rabbit)
- Us14 (6 kDa, Protein from Rabbit)
- Ribosomal protein s11 (18 kDa, Protein from Rabbit)
- Us19 (17 kDa, Protein from Rabbit)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l8 (28 kDa, Protein from Rabbit)
- 40s ribosomal protein s4 (29 kDa, Protein from Rabbit)
- Ul3 (46 kDa, Protein from Rabbit)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Trna (lys3) (24 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Rabbit)
- Ul22 (21 kDa, Protein from Rabbit)
- El43 (10 kDa, Protein from Rabbit)
- Ul6 (21 kDa, Protein from Rabbit)
- El31 (14 kDa, Protein from Rabbit)
- S10_plectin domain-ontaining protein (18 kDa, Protein from Rabbit)
- Wd_repeats_region domain-containing protein (35 kDa, Protein from Rabbit)
- Ul30 (29 kDa, Protein from Rabbit)
- El34 (13 kDa, Protein from Rabbit)
- Ribosomal_l18e/l15p domain-containing protein (16 kDa, Protein from Rabbit)
- 40s ribosomal protein s3a (30 kDa, Protein from Rabbit)
- Ribosomal_l7ae domain-containing protein (12 kDa, Protein from Rabbit)
- 40s ribosomal protein s8 (24 kDa, Protein from Rabbit)
- El33 (12 kDa, Protein from Rabbit)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Rabbit)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Rabbit)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l28e domain-containing protein (15 kDa, Protein from Rabbit)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Rabbit)
- Ul29 (14 kDa, Protein from Rabbit)
- Ribosomal protein l12 (17 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- Polya mrna (3 kDa, RNA from Homo sapiens)