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Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7m5d
Q-score: 0.526
To Be Published
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- Mrna (4 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- Peptide chain release factor 1 (40 kDa, Protein from Escherichia coli)
- Cryo-em structure of a non-rotated e.coli 70s ribosome in complex with rf3-gtp, rf1 and p-trna (state i) (Complex)
- 30s ribosomal protein s2 (25 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (12 kDa, Protein from Escherichia coli)
- Fme-phe-phe (471 Da, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- Peptide chain release factor 3 (58 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- Mrna (Complex from Escherichia coli)
- P-trna (24 kDa, RNA from Escherichia coli)
- E.coli 70s ribosome in complex with rf3-gtp, rf1 and p-trna (state i) (Complex from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7nwh
Q-score: 0.348
Powers KT, Stevenson-Jones F, Yadav SKN, Amthor B, Bufton JC, Borucu U, Shen D, Becker JP, Lavysh D, Hentze MW, Kulozik AE, Neu-Yilik G, Schaffitzel C
Nucleic Acids Res (2021) 49 pp. 7665-7679 [ DOI: doi:10.1093/nar/gkab532 Pubmed: 34157102 ]
- L38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Rabbit)
- 40s ribosomal protein s3a (29 kDa, Protein from Rabbit)
- 40s ribosomal protein s4 (29 kDa, Protein from Rabbit)
- Mrna (4 kDa, RNA from Oryctolagus cuniculus)
- Ul4 (42 kDa, Protein from Rabbit)
- S29 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Rabbit)
- 60s ribosomal protein l11 (20 kDa, Protein from Rabbit)
- 40s_sa_c domain-containing protein (32 kDa, Protein from Rabbit)
- 40s ribosomal protein s25 (13 kDa, Protein from Rabbit)
- 60s ribosomal protein l6 (33 kDa, Protein from Rabbit)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- S7 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Rabbit)
- El42 (16 kDa, Protein from Rabbit)
- Epididymis tissue sperm binding protein li 3a (34 kDa, Protein from Rabbit)
- 40s ribosomal protein s24 (17 kDa, Protein from Rabbit)
- El18 (21 kDa, Protein from Rabbit)
- Ribosomal protein s5 (22 kDa, Protein from Rabbit)
- 60s ribosomal protein el40 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Ribosomal protein us15 (17 kDa, Protein from Rabbit)
- Ribosomal protein s16 (17 kDa, Protein from Rabbit)
- 40s ribosomal protein s28 (7 kDa, Protein from Rabbit)
- Eukaryotic peptide chain release factor subunit 1 (49 kDa, Protein from Rabbit)
- Ribosomal protein l14 (23 kDa, Protein from Rabbit)
- Es19 (16 kDa, Protein from Rabbit)
- El33 (12 kDa, Protein from Rabbit)
- Mammalian pre-termination 80s ribosome with erf1 and erf3 bound by blasticidin s. (3 MDa, Complex from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s20 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- L9 (21 kDa, Protein from Rabbit)
- 60s ribosomal protein l19 (23 kDa, Protein from Rabbit)
- El30 (12 kDa, Protein from Rabbit)
- El21 (18 kDa, Protein from Rabbit)
- Erf3a (48 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Rabbit)
- 40s ribosomal protein s27a (7 kDa, Protein from Rabbit)
- Ul23 (17 kDa, Protein from Rabbit)
- Ribosomal protein s15a (15 kDa, Protein from Rabbit)
- El28 (15 kDa, Protein from Rabbit)
- Ribosomal protein el43 (12 kDa, Protein from Rabbit)
- 40s ribosomal protein s27 (9 kDa, Protein from Rabbit)
- 60s ribosomal protein l36 (12 kDa, Protein from Rabbit)
- Ul22 (23 kDa, Protein from Rabbit)
- 40s ribosomal protein s2 (27 kDa, Protein from Bovine)
- El31 (12 kDa, Protein from Rabbit)
- 60s ribosomal protein l8 (27 kDa, Protein from Rabbit)
- El29 (24 kDa, Protein from Rabbit)
- Ribosomal protein l37 (11 kDa, Protein from Rabbit)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Us11 (16 kDa, Protein from Rabbit)
- 40s ribosomal protein s17 (16 kDa, Protein from Rabbit)
- 40s ribosomal protein us13 (17 kDa, Protein from Rabbit)
- Ribosomal protein l32 (15 kDa, Protein from Rabbit)
- Blasticidin s (422 Da, Ligand)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- L22 (14 kDa, Protein from Oryctolagus cuniculus)
- L7a (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s10 (17 kDa, Protein from Rabbit)
- 60s ribosomal protein l24-like protein (15 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s30 (14 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- Ul12 (21 kDa, Protein from Rabbit)
- Ribosomal protein l26 (15 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Rabbit)
- 40s ribosomal protein s26 (13 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (30 kDa, Protein from Rabbit)
- Ul30 (29 kDa, Protein from Rabbit)
- 40s ribosomal protein us12 (15 kDa, Protein from Rabbit)
- El14 (14 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Rabbit)
- 60s ribosomal protein l13 (24 kDa, Protein from Rabbit)
- Ul29 (14 kDa, Protein from Rabbit)
- 18s ribosomal rna (573 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Rabbit)
- 60s ribosomal protein l34 (14 kDa, Protein from Rabbit)
- El39 (6 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s12 (13 kDa, Protein from Rabbit)
- 40s ribosomal protein s8 (24 kDa, Protein from Rabbit)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Rabbit)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6gxm
Q-score: 0.319
Graf M, Huter P, Maracci C, Peterek M, Rodnina MV, Wilson DN
Nat Commun (2018) 9 pp. 3053-3053 [ Pubmed: 30076302 DOI: doi:10.1038/s41467-018-05465-1 ]
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- Peptide chain release factor rf1 (27 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- In-vitro reconstitution of e. coli 70s ribosomes with rf3-gdpcp, rf1(gaq) and pint-fmet-trna (Complex from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- Peptide chain release factor rf3 (59 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- Apidaecin (1 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- Fmet-trna (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- Mrna (2 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6gwt
Q-score: 0.33
Graf M, Huter P, Maracci C, Peterek M, Rodnina MV, Wilson DN
Nat Commun (2018) 9 pp. 3053-3053 [ Pubmed: 30076302 DOI: doi:10.1038/s41467-018-05465-1 ]
- Ribosome (Complex from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- Fmet-trna (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- Apidaecin (Complex from Apis mellifera)
- Peptide chain release factor rf1 (27 kDa, Protein from Escherichia coli)
- Release factors (Complex from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- Peptide chain release factor 3 (59 kDa, Protein from Escherichia coli)
- Apidaecin (1 kDa, Protein from Apis mellifera)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- Mrna (2 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- In-vitro reconstitution of e. coli 70s ribosomes with rf3-gdpcp, rf1(gaq) and pint-fmet-trna (Complex)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- Mrna (Complex from Escherichia coli)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6gxn
Q-score: 0.307
Graf M, Huter P, Maracci C, Peterek M, Rodnina MV, Wilson DN
Nat Commun (2018) 9 pp. 3053-3053 [ Pubmed: 30076302 DOI: doi:10.1038/s41467-018-05465-1 ]
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 70s ribosome (Complex from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- Apidaecin (Complex from Apis mellifera)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- Peptide chain release factor rf3 (59 kDa, Protein from Escherichia coli)
- Peptide chain release factor rf1 (39 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- Fmet-trna (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- Mrna (2 kDa, RNA from Escherichia coli)
- In-vitro reconstitution of e. coli 70s ribosomes with rf3-gdpcp, rf1(gaq) and pint-fmet-trna (Complex)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- Apidaecin (1 kDa, Protein from Apis mellifera)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6gxo
Q-score: 0.308
Graf M, Huter P, Maracci C, Peterek M, Rodnina MV, Wilson DN
Nat Commun (2018) 9 pp. 3053-3053 [ Pubmed: 30076302 DOI: doi:10.1038/s41467-018-05465-1 ]
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- 70s ribosome (Complex from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- Apidaecin (Complex from Apis mellifera)
- Peptide chain release factor rf1 (27 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- Peptide chain release factor rf3 (59 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- Apidaecin (1 kDa, Protein from Apis mellifera)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- Mrna (2 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- In-vitro reconstitution of e. coli 70s ribosomes with rf3-gdpcp, rf1(gaq) and pint-fmet-trna (Complex)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- Mrna (Complex from Escherichia coli)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Fmet-trna (24 kDa, RNA from Escherichia coli)
Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6gxp
Q-score: 0.217
Graf M, Huter P, Maracci C, Peterek M, Rodnina MV, Wilson DN
Nat Commun (2018) 9 pp. 3053-3053 [ Pubmed: 30076302 DOI: doi:10.1038/s41467-018-05465-1 ]
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- 70s ribosome (Complex from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- Apidaecin (Complex from Apis mellifera)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- Peptide chain release factor rf3 (59 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- Apidaecin (1 kDa, Protein from Apis mellifera)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- In-vitro reconstitution of e. coli 70s ribosomes with rf3-gdpcp, rf1(gaq) and pint-fmet-trna (Complex)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 5lzt
Q-score: 0.434
Shao S, Murray J, Brown A, Taunton J, Ramakrishnan V, Hegde RS
Cell (2016) 167 pp. 1229-1240.e15 [ Pubmed: 27863242 DOI: doi:10.1016/j.cell.2016.10.046 ]
- Es10 (18 kDa, Protein from Rabbit)
- Us5 (31 kDa, Protein from Rabbit)
- Affinity-purified 80s ribosome-nascent chain complex reconstituted with erf1 and erf3. (3 MDa, Complex from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Rabbit)
- Us13 (17 kDa, Protein from Rabbit)
- El14 (23 kDa, Protein from Rabbit)
- El36 (12 kDa, Protein from Rabbit)
- El41 (3 kDa, Protein from Rabbit)
- El13 (24 kDa, Protein from Rabbit)
- Ul6 (21 kDa, Protein from Rabbit)
- Es6 (28 kDa, Protein from Rabbit)
- Es21 (9 kDa, Protein from Rabbit)
- Es1 (30 kDa, Protein from Rabbit)
- Us14 (6 kDa, Protein from Rabbit)
- Ul3 (46 kDa, Protein from Rabbit)
- Ul18 (34 kDa, Protein from Rabbit)
- Us2 (32 kDa, Protein from Rabbit)
- Es30 (14 kDa, Protein from Rabbit)
- E-site trna (24 kDa, RNA from Rabbit)
- El24 (17 kDa, Protein from Rabbit)
- El6 (33 kDa, Protein from Rabbit)
- El38 (8 kDa, Protein from Rabbit)
- El40 (11 kDa, Protein from Rabbit)
- El42 (12 kDa, Protein from Rabbit)
- El28 (15 kDa, Protein from Rabbit)
- El37 (11 kDa, Protein from Rabbit)
- Es27 (9 kDa, Protein from Rabbit)
- Ul14 (14 kDa, Protein from Rabbit)
- El32 (15 kDa, Protein from Rabbit)
- Ul22 (21 kDa, Protein from Rabbit)
- Nascent chain (1 kDa, Protein from Rabbit)
- Erf1 (51 kDa, Protein from Homo sapiens)
- Es31 (18 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Rabbit)
- Ul16 (24 kDa, Protein from Rabbit)
- Es25 (13 kDa, Protein from Rabbit)
- Mrna (uga stop codon) (4 kDa, RNA from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Rabbit)
- Rack1 (35 kDa, Protein from Rabbit)
- Ul5 (20 kDa, Protein from Rabbit)
- Es19 (16 kDa, Protein from Rabbit)
- Erf3a (68 kDa, Protein from Homo sapiens)
- Us19 (17 kDa, Protein from Rabbit)
- Us3 (26 kDa, Protein from Rabbit)
- Es7 (22 kDa, Protein from Rabbit)
- Es28 (7 kDa, Protein from Rabbit)
- El8 (36 kDa, Protein from Rabbit)
- El30 (12 kDa, Protein from Rabbit)
- El20 (20 kDa, Protein from Rabbit)
- El21 (18 kDa, Protein from Rabbit)
- El15 (24 kDa, Protein from Rabbit)
- Ul15 (16 kDa, Protein from Rabbit)
- Ul10 (34 kDa, Protein from Rabbit)
- Us7 (22 kDa, Protein from Rabbit)
- Ul23 (17 kDa, Protein from Rabbit)
- Es8 (24 kDa, Protein from Rabbit)
- El33 (12 kDa, Protein from Rabbit)
- Es26 (13 kDa, Protein from Rabbit)
- Ul4 (47 kDa, Protein from Rabbit)
- Us15 (17 kDa, Protein from Rabbit)
- El29 (26 kDa, Protein from Rabbit)
- Us8 (14 kDa, Protein from Rabbit)
- Us12 (15 kDa, Protein from Rabbit)
- Es17 (15 kDa, Protein from Rabbit)
- El22 (14 kDa, Protein from Rabbit)
- Us17 (18 kDa, Protein from Rabbit)
- El19 (23 kDa, Protein from Rabbit)
- Es24 (15 kDa, Protein from Rabbit)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 28s ribosomal rna (1 MDa, RNA from Rabbit)
- Us9 (16 kDa, Protein from Rabbit)
- Us10 (13 kDa, Protein from Rabbit)
- El31 (14 kDa, Protein from Rabbit)
- El43 (10 kDa, Protein from Rabbit)
- Es4 (29 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Ul24 (17 kDa, Protein from Rabbit)
- Es12 (14 kDa, Protein from Rabbit)
- Ul13 (23 kDa, Protein from Rabbit)
- Us4 (22 kDa, Protein from Rabbit)
- Ul2 (28 kDa, Protein from Rabbit)
- Ul11 (17 kDa, Protein from Rabbit)
- P-site trna (24 kDa, RNA from Rabbit)
- Ul29 (14 kDa, Protein from Rabbit)
- El27 (15 kDa, Protein from Rabbit)
- El39 (6 kDa, Protein from Rabbit)
- 18s ribosomal rna (602 kDa, RNA from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Rabbit)
- Magnesium ion (24 Da, Ligand)
- El18 (21 kDa, Protein from Rabbit)
- El34 (13 kDa, Protein from Rabbit)
Resolution: 8.9 Å
EM Method: Single-particle
Fitted PDBs: 4d61, 4d67
Q-score: 0.1345
Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu KY, Pestova TV, Spahn CM
Mol Cell (2015) 57 pp. 422-432 [ Pubmed: 25601755 DOI: doi:10.1016/j.molcel.2014.12.016 ]
- Ribosomal 80s termination complex with crpv ires-rna, erf1 and erf3 (4 MDa, Sample)
- 80s ribosome (4 MDa, Complex from Oryctolagus cuniculus)
- Eukaryotic release factor 3 (68 kDa, Protein from Homo sapiens)
- Cricket paralysis virus ires rna (RNA from Cricket paralysis virus)
- Eukaryoric release factor 1 (50 kDa, Protein from Homo sapiens)
Cryo-EM of a pretermination complex with eRF1 and eRF3
Resolution: 9.15 Å
EM Method: Single-particle
Fitted PDBs: 4crn
Q-score: 0.075
Preis A, Heuer A, Barrio-Garcia C, Hauser A, Eyler DE, Berninghausen O, Green R, Becker T, Beckmann R
Cell Rep (2014) 8 pp. 59-65 [ Pubmed: 25001285 DOI: doi:10.1016/j.celrep.2014.04.058 ]
- 80s ribosome (Complex from Triticum aestivum)
- "cmv"-stalled wheat germ 80s-rnc bound to erf1 and erf3-gdpnp (Sample)
- Sup45 (49 kDa, Protein from Saccharomyces cerevisiae)
- Sup35 (76 kDa, Protein from Saccharomyces cerevisiae)