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Subcomplexes B,M and L in the Cylic electron transfer supercomplex NDH-PSI from Arabidopsis
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 7wff
Q-score: 0.442
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Photosynthetic ndh subunit of subcomplex b 2, chloroplastic (38 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (40 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from thale cress)
- Isoform 2 of photosynthetic ndh subunit of lumenal location 5, chloroplastic (27 kDa, Protein from thale cress)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b 3, chloroplastic (22 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 5, chloroplastic (85 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 4, chloroplastic (23 kDa, Protein from thale cress)
- Cylic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Photosynthetic ndh subunit of lumenal location 3, chloroplastic (24 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 2, chloroplastic (22 kDa, Protein from thale cress)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ndh dependent flow 6 (18 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of subcomplex b 1, chloroplastic (51 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 1, chloroplastic (26 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (57 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of subcomplex b 5, chloroplastic (23 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from thale cress)
Cyclic electron transport supercomplex NDH-PSI from Arabidopsis
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7wg5
Q-score: 0.278
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of subcomplex b 2, chloroplastic (38 kDa, Protein from thale cress)
- Chlorophyll a (893 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (40 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from thale cress)
- Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (21 kDa, Protein from thale cress)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
- Isoform 2 of photosynthetic ndh subunit of lumenal location 5, chloroplastic (27 kDa, Protein from thale cress)
- Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b 3, chloroplastic (22 kDa, Protein from thale cress)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 5, chloroplastic (85 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from thale cress)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 4, chloroplastic (23 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 3, chloroplastic (24 kDa, Protein from thale cress)
- Ndht (10 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (23 kDa, Protein from thale cress)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosynthetic ndh subunit of lumenal location 2, chloroplastic (22 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (25 kDa, Protein from thale cress)
- Ndho (17 kDa, Protein from thale cress)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
- Cyclic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
- Ndh dependent flow 6 (18 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of subcomplex b 1, chloroplastic (51 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from thale cress)
- Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 1, chloroplastic (26 kDa, Protein from thale cress)
- Beta-carotene (536 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (57 kDa, Protein from thale cress)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b 5, chloroplastic (23 kDa, Protein from thale cress)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (20 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from thale cress)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7eu3
Q-score: 0.402
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ Pubmed: 34879391 DOI: doi:10.1038/s41586-021-04277-6 ]
- Photosynthetic ndh subunit of subcomplex l1 (17 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b4 (9 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b5 (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit f (87 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l5 (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (53 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Unidentified stromal protein (5 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (19 kDa, Protein from Hordeum vulgare)
- Photosynthetic ndh subunit of subcomplex l3 (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Hordeum vulgare)
- Nad(p)h-quinone oxidoreductase subunit l (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chloroplast ndh complex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit n (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b2 (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l2 (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b1 (51 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (44 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit j (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (38 kDa, Protein from Hordeum vulgare)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l4 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b3 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit m (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
PSI-NDH supercomplex of Barley
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7f9o
Q-score: 0.153
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ Pubmed: 34879391 DOI: doi:10.1038/s41586-021-04277-6 ]
- Chlorophyll b (907 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex l1 (17 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit iv, chloroplastic (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a (893 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b4 (9 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit xi, chloroplastic (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b5 (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l5 (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (53 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Unidentified stromal protein (5 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nadh-plastoquinone oxidoreductase subunit 5 (87 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca4 (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Psi-ndh supercomplex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l2 (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i iron-sulfur center (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b2 (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l2 (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (44 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b1 (51 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca5 (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l4 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca1 (26 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b3 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)