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HRV14 in complex with its receptor ICAM-1
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7bg7
Q-score: 0.696
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ Pubmed: 33947819 DOI: doi:10.1073/pnas.2024251118 ]
- Genome polyprotein (7 kDa, Protein from HRV-14)
- Rhinovirus (Complex from Human rhinovirus 14)
- Genome polyprotein (32 kDa, Protein from HRV-14)
- Intercellular adhesion molecule 1 (Complex from Homo sapiens)
- Genome polyprotein (26 kDa, Protein from HRV-14)
- Intercellular adhesion molecule 1 (49 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Human rhinovirus 14 (10 MDa, Virus)
- Genome polyprotein (28 kDa, Protein from HRV-14)
EV-D68 in complex with 8F12 Fab
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7ec5
Q-score: 0.548
Zhang C, Xu C, Dai W, Wang Y, Liu Z, Zhang X, Wang X, Wang H, Gong S, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 2904-2904 [ DOI: doi:10.1038/s41467-021-23199-5 Pubmed: 34006855 ]
- 8f12 fab heavy chain (23 kDa, Protein from Mus musculus)
- Capsid protein vp3 (27 kDa, Protein from EV68, EV-68)
- Enterovirus d68 (Virus from Enterovirus D68)
- Capsid protein vp1 (32 kDa, Protein from EV68, EV-68)
- 8f12 fab (Complex from Mus musculus)
- Enterovirus d68 in complex with 8f12 fab (Complex)
- Capsid protein vp4 (7 kDa, Protein from EV68, EV-68)
- 8f12 fab light chain (23 kDa, Protein from Mus musculus)
- Genome polyprotein (27 kDa, Protein from EV68, EV-68)
Native-like genome-containing particle of DWV in acidic pH
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7al3
Q-score: 0.26
Skubnik K, Sukenik L, Buchta D, Fuzik T, Prochazkova M, Moravcova J, Smerdova L, Pridal A, Vacha R, Plevka P
Sci Adv (2021) 7 [ Pubmed: 33523856 DOI: doi:10.1126/sciadv.abd7130 ]
- Genome polyprotein (28 kDa, Protein from Deformed wing virus)
- Genome polyprotein (28 kDa, Protein from Deformed wing virus)
- Genome polyprotein (46 kDa, Protein from Deformed wing virus)
- Deformed wing virus (Virus from Deformed wing virus)
Cryo-EM structure of Spondweni virus prME
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6zqi
Q-score: 0.424
Renner M, Dejnirattisai W, Carrique L, Martin IS, Karia D, Ilca SL, Ho SF, Kotecha A, Keown JR, Mongkolsapaya J, Screaton GR, Grimes JM
Nat Commun (2021) 12 pp. 1238-1238 [ DOI: doi:10.1038/s41467-021-21505-9 Pubmed: 33623019 ]
- Genome polyprotein (19 kDa, Protein from Spondweni virus)
- Genome polyprotein (54 kDa, Protein from Spondweni virus)
- Spondweni virus (Virus from Spondweni virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of trimeric prME spike of Spondweni virus
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6zqj
Q-score: 0.342
Renner M, Dejnirattisai W, Carrique L, Martin IS, Karia D, Ilca SL, Ho SF, Kotecha A, Keown JR, Mongkolsapaya J, Screaton GR, Grimes JM
Nat Commun (2021) 12 pp. 1238-1238 [ DOI: doi:10.1038/s41467-021-21505-9 Pubmed: 33623019 ]
- Genome polyprotein (54 kDa, Protein from Spondweni virus)
- Spondweni virus (Virus from Spondweni virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Prm (19 kDa, Protein from Spondweni virus)
Cryo-EM structure of mature Dengue virus 2 at 3.1 angstrom resolution
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6zqu
Q-score: 0.488
Renner M, Dejnirattisai W, Carrique L, Martin IS, Karia D, Ilca SL, Ho SF, Kotecha A, Keown JR, Mongkolsapaya J, Screaton GR, Grimes JM
Nat Commun (2021) 12 pp. 1238-1238 [ DOI: doi:10.1038/s41467-021-21505-9 Pubmed: 33623019 ]
- Genome polyprotein (8 kDa, Protein from Dengue virus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Genome polyprotein (54 kDa, Protein from Dengue virus 2)
- Dengue virus 2 (Virus from Dengue virus 2)
Cryo-EM structure of mature Spondweni virus
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 6zqv
Q-score: 0.625
Renner M, Dejnirattisai W, Carrique L, Martin IS, Karia D, Ilca SL, Ho SF, Kotecha A, Keown JR, Mongkolsapaya J, Screaton GR, Grimes JM
Nat Commun (2021) 12 pp. 1238-1238 [ DOI: doi:10.1038/s41467-021-21505-9 Pubmed: 33623019 ]
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Genome polyprotein (54 kDa, Protein from Spondweni virus)
- Spondweni virus (Virus from Spondweni virus)
- Genome polyprotein (8 kDa, Protein from Spondweni virus)
Cryo-EM structure of immature Spondweni virus
Resolution: 7.8 Å
EM Method: Single-particle
Fitted PDBs: 6zqw
Q-score: 0.154
Renner M, Dejnirattisai W, Carrique L, Martin IS, Karia D, Ilca SL, Ho SF, Kotecha A, Keown JR, Mongkolsapaya J, Screaton GR, Grimes JM
Nat Commun (2021) 12 pp. 1238-1238 [ DOI: doi:10.1038/s41467-021-21505-9 Pubmed: 33623019 ]
- Genome polyprotein (54 kDa, Protein from Spondweni virus)
- Spondweni virus (Virus from Spondweni virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Prm (19 kDa, Protein from Spondweni virus)