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Purification of Enterovirus A71, strain 4643, WT capsid
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 8e2y
Q-score: 0.148
Catching A, Te Yeh M, Bianco S, Capponi S, Andino R
Nat Commun (2023) 14 pp. 7450-7450 [ DOI: doi:10.1038/s41467-023-43029-0 Pubmed: 37978288 ]
- Vp2 (25 kDa, Protein from Enterovirus A71)
- Vp1 (25 kDa, Protein from Enterovirus A71)
- Human enterovirus 71 (Virus from Human enterovirus 71)
- Genome polyprotein (25 kDa, Protein from Enterovirus A71)
Purification of Enterovirus A71, strain 4643, WT capsid
Resolution: 14.0 Å
EM Method: Single-particle
Fitted PDBs: 8e31
Q-score: 0.084
Catching A, Te Yeh M, Bianco S, Capponi S, Andino R
Nat Commun (2023) 14 pp. 7450-7450 [ DOI: doi:10.1038/s41467-023-43029-0 Pubmed: 37978288 ]
- Vp1 (25 kDa, Protein from Enterovirus A71)
- Human enterovirus 71 (Virus from Human enterovirus 71)
- Genome polyprotein (24 kDa, Protein from Enterovirus A71)
- Vp3 (23 kDa, Protein from Enterovirus A71)
Cryo-EM structure of compact CA16 empty particle in complex with a neutralizing antibody 8C4
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 7yrf
Q-score: 0.433
Zhang C, Liu C, Shi J, Wang Y, Xu C, Ye X, Liu Q, Li X, Qiao W, Yin Y, Cong Y, Huang Z
Nat Commun (2022) 13 pp. 7854-7854 [ Pubmed: 36543790 DOI: doi:10.1038/s41467-022-35575-w ]
- Genome polyprotein (33 kDa, Protein from Coxsackievirus A16)
- Sphingosine (299 Da, Ligand)
- Cryo-em structure of compact ca16 empty particle in complex with a neutralizing antibody 8c4 (Complex from Coxsackievirus A16)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A16)
- Light chain of chain (23 kDa, Protein from Coxsackievirus A16)
- The heavy chain of the antibody 8c4 (22 kDa, Protein from Coxsackievirus A16)
- Genome polyprotein (25 kDa, Protein from Coxsackievirus A16)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7yrh
Q-score: 0.405
Zhang C, Liu C, Shi J, Wang Y, Xu C, Ye X, Liu Q, Li X, Qiao W, Yin Y, Cong Y, Huang Z
Nat Commun (2022) 13 pp. 7854-7854 [ Pubmed: 36543790 DOI: doi:10.1038/s41467-022-35575-w ]
- Genome polyprotein (33 kDa, Protein from Coxsackievirus A16)
- The light chain of the antibody 9b5 (23 kDa, Protein from Coxsackievirus A16)
- Sphingosine (299 Da, Ligand)
- Cryo-em structure of compact coxsackievirus a16 empty particle in complex with a neutralizing antibody 9b5 (Complex from Coxsackievirus A16)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A16)
- The heavy chain of the antibody 9b5 (23 kDa, Protein from Coxsackievirus A16)
- Capsid protein vp1 (33 kDa, Protein from Coxsackievirus A16)
EV-D68 in complex with 8F12 Fab
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7ec5
Q-score: 0.548
Zhang C, Xu C, Dai W, Wang Y, Liu Z, Zhang X, Wang X, Wang H, Gong S, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 2904-2904 [ DOI: doi:10.1038/s41467-021-23199-5 Pubmed: 34006855 ]
- Enterovirus d68 in complex with 8f12 fab (Complex)
- Genome polyprotein (27 kDa, Protein from EV68, EV-68)
- 8f12 fab heavy chain (23 kDa, Protein from Mus musculus)
- 8f12 fab light chain (23 kDa, Protein from Mus musculus)
- Enterovirus d68 (Virus from Enterovirus D68)
- Capsid protein vp1 (32 kDa, Protein from EV68, EV-68)
- Capsid protein vp3 (27 kDa, Protein from EV68, EV-68)
- Capsid protein vp4 (7 kDa, Protein from EV68, EV-68)
- 8f12 fab (Complex from Mus musculus)
Cryo-EM structure of Spondweni virus prME
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6zqi
Q-score: 0.424
Renner M, Dejnirattisai W, Carrique L, Martin IS, Karia D, Ilca SL, Ho SF, Kotecha A, Keown JR, Mongkolsapaya J, Screaton GR, Grimes JM
Nat Commun (2021) 12 pp. 1238-1238 [ DOI: doi:10.1038/s41467-021-21505-9 Pubmed: 33623019 ]
- Genome polyprotein (54 kDa, Protein from Spondweni virus)
- Spondweni virus (Virus from Spondweni virus)
- Genome polyprotein (19 kDa, Protein from Spondweni virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of trimeric prME spike of Spondweni virus
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6zqj
Q-score: 0.342
Renner M, Dejnirattisai W, Carrique L, Martin IS, Karia D, Ilca SL, Ho SF, Kotecha A, Keown JR, Mongkolsapaya J, Screaton GR, Grimes JM
Nat Commun (2021) 12 pp. 1238-1238 [ DOI: doi:10.1038/s41467-021-21505-9 Pubmed: 33623019 ]
- Prm (19 kDa, Protein from Spondweni virus)
- Genome polyprotein (54 kDa, Protein from Spondweni virus)
- Spondweni virus (Virus from Spondweni virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of mature Dengue virus 2 at 3.1 angstrom resolution
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6zqu
Q-score: 0.488
Renner M, Dejnirattisai W, Carrique L, Martin IS, Karia D, Ilca SL, Ho SF, Kotecha A, Keown JR, Mongkolsapaya J, Screaton GR, Grimes JM
Nat Commun (2021) 12 pp. 1238-1238 [ DOI: doi:10.1038/s41467-021-21505-9 Pubmed: 33623019 ]
- Dengue virus 2 (Virus from Dengue virus 2)
- Genome polyprotein (54 kDa, Protein from Dengue virus 2)
- Genome polyprotein (8 kDa, Protein from Dengue virus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of mature Spondweni virus
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 6zqv
Q-score: 0.625
Renner M, Dejnirattisai W, Carrique L, Martin IS, Karia D, Ilca SL, Ho SF, Kotecha A, Keown JR, Mongkolsapaya J, Screaton GR, Grimes JM
Nat Commun (2021) 12 pp. 1238-1238 [ DOI: doi:10.1038/s41467-021-21505-9 Pubmed: 33623019 ]
- Genome polyprotein (8 kDa, Protein from Spondweni virus)
- Genome polyprotein (54 kDa, Protein from Spondweni virus)
- Spondweni virus (Virus from Spondweni virus)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
Cryo-EM structure of immature Spondweni virus
Resolution: 7.8 Å
EM Method: Single-particle
Fitted PDBs: 6zqw
Q-score: 0.154
Renner M, Dejnirattisai W, Carrique L, Martin IS, Karia D, Ilca SL, Ho SF, Kotecha A, Keown JR, Mongkolsapaya J, Screaton GR, Grimes JM
Nat Commun (2021) 12 pp. 1238-1238 [ DOI: doi:10.1038/s41467-021-21505-9 Pubmed: 33623019 ]
- Prm (19 kDa, Protein from Spondweni virus)
- Genome polyprotein (54 kDa, Protein from Spondweni virus)
- Spondweni virus (Virus from Spondweni virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)