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Structure of PSII-ACPII supercomplex from cryptophyte algae
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 8wb4
Q-score: 0.539
Mao Z, Li X, Li Z, Shen L, Li X, Yang Y, Wang W, Kuang T, Shen JR, Han G
Nat Commun (2024) 15 pp. 4535-4535 [ Pubmed: 38806516 DOI: doi:10.1038/s41467-024-48878-x ]
- Photosystem ii reaction center m (11 kDa, Protein from Chroomonas placoidea)
- Chloride ion (35 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Chroomonas placoidea)
- Ccpii-s (30 kDa, Protein from Chroomonas placoidea)
- Fe (ii) ion (55 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Acpii-6 (23 kDa, Protein from Chroomonas placoidea)
- Photosystem ii d2 protein (39 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Chroomonas placoidea)
- Photosystem ii cp43 reaction center protein (50 kDa, Protein from Chroomonas placoidea)
- Photosystem ii cytochrome c550 (17 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center x protein (4 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein h (7 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein l (4 kDa, Protein from Chroomonas placoidea)
- Acpii-1 (25 kDa, Protein from Chroomonas placoidea)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Chroomonas placoidea)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem ii reaction center protein g (5 kDa, Protein from Chroomonas placoidea)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Photosystem ii reaction center protein w (11 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein q (1 kDa, Protein from Chroomonas placoidea)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{r},4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii reaction center protein u (15 kDa, Protein from Chroomonas placoidea)
- Acpii-5 (23 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein z (6 kDa, Protein from Chroomonas placoidea)
- Acpii-3 (24 kDa, Protein from Chroomonas placoidea)
- Cytochrome b559 subunit beta (4 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein r (2 kDa, Protein from Chroomonas placoidea)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Photosystem ii reaction center protein k (5 kDa, Protein from Chroomonas placoidea)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
- Acpii-4 (23 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein j (3 kDa, Protein from Chroomonas placoidea)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- Photosystem ii reaction center protein i (4 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein t (3 kDa, Protein from Chroomonas placoidea)
- Bicarbonate ion (61 Da, Ligand)
- Photosystem ii protein d1 (39 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein o (34 kDa, Protein from Chroomonas placoidea)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Acpii-2 (23 kDa, Protein from Chroomonas placoidea)
- Structure of psii-acpii supercomplex from cryptophyte algae (Complex from Chroomonas placoidea)
- Protoporphyrin ix containing fe (616 Da, Ligand)
Structure of ACPII-CCPII from cryptophyte algae
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8xkl
Q-score: 0.49
Mao Z, Li X, Li Z, Shen L, Li X, Yang Y, Wang W, Kuang T, Shen JR, Han G
Nat Commun (2024) 15 pp. 4535-4535 [ Pubmed: 38806516 DOI: doi:10.1038/s41467-024-48878-x ]
- Acpii-1 (25 kDa, Protein from Chroomonas placoidea)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{r},4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Acpii-3 (24 kDa, Protein from Chroomonas placoidea)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Ccpii-s (30 kDa, Protein from Chroomonas placoidea)
- Acpii-4 (23 kDa, Protein from Chroomonas placoidea)
- Chlorophyll c2 (608 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Acpii-5 (23 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein g (5 kDa, Protein from Chroomonas placoidea)
- Chlorophyll a (893 Da, Ligand)
- Acpii-6 (23 kDa, Protein from Chroomonas placoidea)
- Structure of acpii-ccpii from cryptophyte algae (Complex from Chroomonas placoidea)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Acpii-2 (23 kDa, Protein from Chroomonas placoidea)
The structure of PSI-CAC(L-14)of R.salina at 2.7 angstroms resolution
Zhang S, Si L, Su X, Zhao X, An X, Li M
Commun Biol (2024) 7 pp. 560-560 [ Pubmed: 38734819 DOI: doi:10.1038/s42003-024-06268-5 ]
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Rhodomonas salina)
- 1,3,3-trimethyl-2-[(1e,3e,5e,7e,9e,11e,13e,15e,17e)-3,7,12,16-tetramethyl-18-[(1r)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene (536 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Cac-b (23 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Rhodomonas salina)
- Cac-k (25 kDa, Protein from Rhodomonas salina)
- Cac-e (21 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Rhodomonas salina)
- Water (18 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Rhodomonas salina)
- Cac-h (23 kDa, Protein from Rhodomonas salina)
- Cac-c (23 kDa, Protein from Rhodomonas salina)
- Cac-d (22 kDa, Protein from Rhodomonas salina)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Cac-f (22 kDa, Protein from Rhodomonas salina)
- Cac-a (23 kDa, Protein from Rhodomonas salina)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Rhodomonas salina)
- Psaq (23 kDa, Protein from Rhodomonas salina)
- Psar (13 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Rhodomonas salina)
- Cac-l (25 kDa, Protein from Rhodomonas salina)
- Psao (15 kDa, Protein from Rhodomonas salina)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Rhodomonas salina)
- Cac-n (22 kDa, Protein from Rhodomonas salina)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Rhodomonas salina)
- Chain s (27 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Rhodomonas salina)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Cac-g (26 kDa, Protein from Rhodomonas salina)
- Cac-i (23 kDa, Protein from Rhodomonas salina)
- Chlorophyll c2 (608 Da, Ligand)
- Psi-cac (800 kDa, Complex from Rhodomonas salina)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
structure of PSI-11CAC complex at Logrithmic growth phase
Zhang S, Si L, Su X, Zhao X, An X, Li M
Commun Biol (2024) 7 pp. 560-560 [ Pubmed: 38734819 DOI: doi:10.1038/s42003-024-06268-5 ]
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Rhodomonas salina)
- Cac-h (23 kDa, Protein from Rhodomonas salina)
- Cac-k (25 kDa, Protein from Rhodomonas salina)
- Cac-i (23 kDa, Protein from Rhodomonas salina)
- 1,3,3-trimethyl-2-[(1e,3e,5e,7e,9e,11e,13e,15e,17e)-3,7,12,16-tetramethyl-18-[(1r)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene (536 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Rhodomonas salina)
- Cac-d (22 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Rhodomonas salina)
- Water (18 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Rhodomonas salina)
- Cac-a (23 kDa, Protein from Rhodomonas salina)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Cac-c (23 kDa, Protein from Rhodomonas salina)
- Cac-n (22 kDa, Protein from Rhodomonas salina)
- Cac-j (22 kDa, Protein from Rhodomonas salina)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Rhodomonas salina)
- Psaq (23 kDa, Protein from Rhodomonas salina)
- Psar (13 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Rhodomonas salina)
- Psi-cac (Complex from Rhodomonas salina)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Rhodomonas salina)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Rhodomonas salina)
- Chain s (27 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Rhodomonas salina)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Cac-l (25 kDa, Protein from Rhodomonas salina)
- Chlorophyll c2 (608 Da, Ligand)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- Cac-b (23 kDa, Protein from Rhodomonas salina)
The structure of PSI-14CAC complex at stationary growth phase
Zhang S, Si L, Su X, Zhao X, An X, Li M
Commun Biol (2024) 7 pp. 560-560 [ Pubmed: 38734819 DOI: doi:10.1038/s42003-024-06268-5 ]
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Rhodomonas salina)
- Cac-h (23 kDa, Protein from Rhodomonas salina)
- Cac-k (25 kDa, Protein from Rhodomonas salina)
- Cac-i (23 kDa, Protein from Rhodomonas salina)
- 1,3,3-trimethyl-2-[(1e,3e,5e,7e,9e,11e,13e,15e,17e)-3,7,12,16-tetramethyl-18-[(1r)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene (536 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psi-14cac(l-phase) (Complex from Rhodomonas salina)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Rhodomonas salina)
- Cac-e (21 kDa, Protein from Rhodomonas salina)
- Cac-d (22 kDa, Protein from Rhodomonas salina)
- Cac-g (26 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Rhodomonas salina)
- Water (18 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Rhodomonas salina)
- Cac-a (23 kDa, Protein from Rhodomonas salina)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Cac-c (23 kDa, Protein from Rhodomonas salina)
- Cac-n (22 kDa, Protein from Rhodomonas salina)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Rhodomonas salina)
- Psar (13 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Rhodomonas salina)
- Psao (15 kDa, Protein from Rhodomonas salina)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Rhodomonas salina)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Rhodomonas salina)
- Chain s (27 kDa, Protein from Rhodomonas salina)
- Cac-m, cac-f (22 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Rhodomonas salina)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Cac-l (25 kDa, Protein from Rhodomonas salina)
- Chlorophyll c2 (608 Da, Ligand)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- Cac-b (23 kDa, Protein from Rhodomonas salina)
The structure of PSI-11CAC at the stationary growth phase
Zhang S, Si L, Su X, Zhao X, An X, Li M
Commun Biol (2024) 7 pp. 560-560 [ Pubmed: 38734819 DOI: doi:10.1038/s42003-024-06268-5 ]
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Rhodomonas salina)
- Cac-h (23 kDa, Protein from Rhodomonas salina)
- Cac-k (25 kDa, Protein from Rhodomonas salina)
- Cac-i (23 kDa, Protein from Rhodomonas salina)
- 1,3,3-trimethyl-2-[(1e,3e,5e,7e,9e,11e,13e,15e,17e)-3,7,12,16-tetramethyl-18-[(1r)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene (536 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Rhodomonas salina)
- Cac-e (21 kDa, Protein from Rhodomonas salina)
- Cac-d (22 kDa, Protein from Rhodomonas salina)
- Cac-g (26 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Rhodomonas salina)
- Water (18 Da, Ligand)
- Cac-f (22 kDa, Protein from Rhodomonas salina)
- Photosystem i iron-sulfur center (8 kDa, Protein from Rhodomonas salina)
- Cac-a (23 kDa, Protein from Rhodomonas salina)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Cac-c (23 kDa, Protein from Rhodomonas salina)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Rhodomonas salina)
- Pigment binding protein complex (Complex from Rhodomonas salina)
- Psar (13 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Rhodomonas salina)
- Psao (15 kDa, Protein from Rhodomonas salina)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Rhodomonas salina)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Rhodomonas salina)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Rhodomonas salina)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Rhodomonas salina)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- Cac-b (23 kDa, Protein from Rhodomonas salina)
Cryo-EM structure of DltB homo-tetramer
Nat Commun (2024) 15 pp. 3404-3404 [ DOI: doi:10.1038/s41467-024-47783-7 Pubmed: 38649359 ]
- Apo dltb tetramer in ddm. (48 MDa, Cellular component from Streptococcus thermophilus)
- Diacyl glycerol (625 Da, Ligand)
- Teichoic acid d-alanyltransferase (51 kDa, Protein from Streptococcus thermophilus LMG 18311)
- (1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Cryo-EM structure of tetrameric DltB/DltC complex
Nat Commun (2024) 15 pp. 3404-3404 [ DOI: doi:10.1038/s41467-024-47783-7 Pubmed: 38649359 ]
- D-alanyl carrier protein (8 kDa, Protein from Streptococcus thermophilus LMG 18311)
- Diacyl glycerol (625 Da, Ligand)
- Teichoic acid d-alanyltransferase (51 kDa, Protein from Streptococcus thermophilus LMG 18311)
- Tetrameric dltb/dltc complex in ddm. (8 MDa, Cellular component from Streptococcus thermophilus)
- (1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
DltB tetramer in complex with inhibitor m-AMSA
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8jem
Q-score: 0.502
Nat Commun (2024) 15 pp. 3404-3404 [ DOI: doi:10.1038/s41467-024-47783-7 Pubmed: 38649359 ]
- Diacyl glycerol (625 Da, Ligand)
- Dltb tetramer in complex with inhibitor m-amsa. (48 MDa, Complex from Streptococcus thermophilus)
- Teichoic acid d-alanyltransferase (51 kDa, Protein from Streptococcus thermophilus LMG 18311)
- N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide (393 Da, Ligand)
- (1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Cryo-EM structure of Symbiodinium photosystem I
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8jjr
Q-score: 0.575
Zhao LS, Wang N, Li K, Li CY, Guo JP, He FY, Liu GM, Chen XL, Gao J, Liu LN, Zhang YZ
Nat Commun (2024) 15 pp. 2392-2392 [ DOI: doi:10.1038/s41467-024-46791-x Pubmed: 38493166 ]
- Pcpi-3 (27 kDa, Protein from Symbiodinium sp.)
- Pcpi-13 (23 kDa, Protein from Symbiodinium sp.)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Pcpi-12 (21 kDa, Protein from Symbiodinium sp.)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psam (14 kDa, Protein from Symbiodinium sp.)
- Psar (17 kDa, Protein from Symbiodinium sp.)
- Pcpi-8 (30 kDa, Protein from Symbiodinium sp.)
- [(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
- Psat (13 kDa, Protein from Symbiodinium sp.)
- Pcpi-7 (27 kDa, Protein from Symbiodinium sp.)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Pcpi-1 (28 kDa, Protein from Symbiodinium sp.)
- Pcpi-6 (19 kDa, Protein from Symbiodinium sp.)
- Psal (38 kDa, Protein from Symbiodinium sp.)
- Pcpi-4 (24 kDa, Protein from Symbiodinium sp.)
- Pcpi-5 (26 kDa, Protein from Symbiodinium sp.)
- Phylloquinone (450 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Psab (74 kDa, Protein from Symbiodinium sp.)
- Pcp-11 (21 kDa, Protein from Symbiodinium sp.)
- Iron/sulfur cluster (351 Da, Ligand)
- Psae (13 kDa, Protein from Symbiodinium sp.)
- Peridinin (630 Da, Ligand)
- Psac (16 kDa, Protein from Symbiodinium sp.)
- Pcpi-2 (15 kDa, Protein from Symbiodinium sp.)
- Psai (19 kDa, Protein from Symbiodinium sp.)
- Pcpi-9 (22 kDa, Protein from Symbiodinium sp.)
- Psad (32 kDa, Protein from Symbiodinium sp.)
- Psaj (15 kDa, Protein from Symbiodinium sp.)
- Psau (24 kDa, Protein from Symbiodinium sp.)
- Chlorophyll a (893 Da, Ligand)
- Pcpi-10 (27 kDa, Protein from Symbiodinium sp.)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i of symbiodinium (Complex from Symbiodinium sp.)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Psaa (76 kDa, Protein from Symbiodinium sp.)
- Psaf (29 kDa, Protein from Symbiodinium sp.)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)