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48-nm doublet microtubule from Tetrahymena thermophila strain MEC17
Yang SK, Kubo S, Black CS, Peri K, Dai D, Legal T, Valente-Paterno M, Gaertig J, Bui KH
eLife (2024) 12 [ DOI: doi:10.7554/eLife.92219 Pubmed: 38598282 ]
- Cfap112b (32 kDa, Protein from Tetrahymena thermophila)
- Stpg2 (33 kDa, Protein from Tetrahymena thermophila)
- 48-nm repeat unit of microtubule doublet from tetrahymena thermophila strain mec17 (7 MDa, Cellular component from Tetrahymena thermophila)
- Cfap210 (61 kDa, Protein from Tetrahymena thermophila)
- Cfap161a (57 kDa, Protein from Tetrahymena thermophila)
- Cfap77a (28 kDa, Protein from Tetrahymena thermophila)
- Cfap182a (20 kDa, Protein from Tetrahymena thermophila)
- Cfap115 (110 kDa, Protein from Tetrahymena thermophila)
- Cfam166b (17 kDa, Protein from Tetrahymena thermophila)
- Ij34 (34 kDa, Protein from Tetrahymena thermophila)
- Rib35 (34 kDa, Protein from Tetrahymena thermophila)
- Cfap127 (55 kDa, Protein from Tetrahymena thermophila)
- Cfam166c (25 kDa, Protein from Tetrahymena thermophila)
- Cfap143 (30 kDa, Protein from Tetrahymena thermophila)
- Rib27b (26 kDa, Protein from Tetrahymena thermophila)
- Rib38 (38 kDa, Protein from Tetrahymena thermophila)
- Cfam166a (25 kDa, Protein from Tetrahymena thermophila)
- Rib26 (26 kDa, Protein from Tetrahymena thermophila)
- Oj2 (19 kDa, Protein from Tetrahymena thermophila)
- Cfap21a (48 kDa, Protein from Tetrahymena thermophila)
- Rib27a (27 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 53 (60 kDa, Protein from Tetrahymena thermophila)
- Parkin co-regulated protein pacrga (36 kDa, Protein from Tetrahymena thermophila)
- Flagellar flij protein (12 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 45 (59 kDa, Protein from Tetrahymena thermophila)
- Rib22 (22 kDa, Protein from Tetrahymena thermophila)
- Cfap182b (11 kDa, Protein from Tetrahymena thermophila)
- Parkin co-regulated protein pacrgb (28 kDa, Protein from Tetrahymena thermophila)
- Rib57 (57 kDa, Protein from Tetrahymena thermophila)
- Nebulin (61 kDa, Protein from Tetrahymena thermophila)
- Rib72b (60 kDa, Protein from Tetrahymena thermophila)
- Dna polymerase delta c4-type zinc-finger protein (31 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 52 (73 kDa, Protein from Tetrahymena thermophila)
- Cfap129 (31 kDa, Protein from Tetrahymena thermophila)
- Flagellar microtugule protofilament ribbon protein (72 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Cfap20 (22 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Cfap107 (21 kDa, Protein from Tetrahymena thermophila)
- Cfap112a (30 kDa, Protein from Tetrahymena thermophila)
- Protofilament ribbon protein (34 kDa, Protein from Tetrahymena thermophila)
- Oj3 (19 kDa, Protein from Tetrahymena thermophila)
- Stpg1a (42 kDa, Protein from Tetrahymena thermophila)
- Tubulin beta chain (49 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Rib43a protein (17 kDa, Protein from Tetrahymena thermophila)
- Nucleoside diphosphate kinase (42 kDa, Protein from Tetrahymena thermophila)
- Tubulin alpha chain (49 kDa, Protein from Tetrahymena thermophila)
- Sb1 (17 kDa, Protein from Tetrahymena thermophila)
cryo-EM structure of sea urchin sperm doublet microtubule (48-nm periodicity)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8snb
Q-score: 0.466
Leung MR, Zeng J, Wang X, Roelofs MC, Huang W, Zenezini Chiozzi R, Hevler JF, Heck AJR, Dutcher SK, Brown A, Zhang R, Zeev-Ben-Mordehai T
Cell (2023) [ DOI: doi:10.1016/j.cell.2023.05.026 Pubmed: 37327785 ]
- Cfa20 domain-containing protein (22 kDa, Protein from purple sea urchin)
- Cfap90(c5orf49) (19 kDa, Protein from purple sea urchin)
- Tex36(cfap95, c9orf135) (25 kDa, Protein from purple sea urchin)
- Fam166c (23 kDa, Protein from purple sea urchin)
- Cilia- and flagella-associated protein 77 (27 kDa, Protein from purple sea urchin)
- Outer dense fiber protein 3 (27 kDa, Protein from purple sea urchin)
- Sea urchin sperm doublet microtubule (Cellular component from Strongylocentrotus purpuratus)
- Cilia- and flagella-associated protein 97 (27 kDa, Protein from purple sea urchin)
- Flagellar flij protein (14 kDa, Protein from purple sea urchin)
- Nucleoside diphosphate kinase (42 kDa, Protein from purple sea urchin)
- Spata48 (23 kDa, Protein from Strongylocentrotus purpuratus)
- Testicular haploid expressed gene protein-like (30 kDa, Protein from purple sea urchin)
- Sperm-associated antigen 8 (23 kDa, Protein from purple sea urchin)
- Cfap107 (27 kDa, Protein from purple sea urchin)
- Ef-hand domain-containing family member c2 (85 kDa, Protein from purple sea urchin)
- Rib35 (34 kDa, Protein from purple sea urchin)
- Trichohyalin-plectin-homology domain-containing protein (62 kDa, Protein from purple sea urchin)
- Helo_like_n(loc577943) (34 kDa, Protein from purple sea urchin)
- Tex33 (40 kDa, Protein from purple sea urchin)
- Flagellar protofilament ribbon protein rib74 (74 kDa, Protein from purple sea urchin)
- Tektin a1 (53 kDa, Protein from purple sea urchin)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta chain (50 kDa, Protein from purple sea urchin)
- Cilia- and flagella-associated protein 45 (64 kDa, Protein from purple sea urchin)
- Coiled-coil domain-containing protein 105 (49 kDa, Protein from purple sea urchin)
- Coiled-coil domain-containing protein 81 (79 kDa, Protein from purple sea urchin)
- Trichohyalin-plectin-homology domain-containing protein (65 kDa, Protein from purple sea urchin)
- Saxo3(loc115918676) (37 kDa, Protein from purple sea urchin)
- Rib43a-like with coiled-coils protein 2 (45 kDa, Protein from purple sea urchin)
- Tex43 (14 kDa, Protein from purple sea urchin)
- Tepp protein (21 kDa, Protein from purple sea urchin)
- Enkurin domain-containing protein (30 kDa, Protein from purple sea urchin)
- Tektin c1 (46 kDa, Protein from purple sea urchin)
- Outer dense fiber protein 3 (30 kDa, Protein from purple sea urchin)
- Tektin b1 (49 kDa, Protein from purple sea urchin)
- Cfap276 (19 kDa, Protein from purple sea urchin)
- C20orf85 (23 kDa, Protein from purple sea urchin)
- Tubulin alpha chain (50 kDa, Protein from purple sea urchin)
- Tex26(loc100888047) (19 kDa, Protein from purple sea urchin)
- Cilia- and flagella-associated protein 52 (70 kDa, Protein from purple sea urchin)
- Spata45 (9 kDa, Protein from purple sea urchin)
- Pacrg (26 kDa, Protein from purple sea urchin)
- Pierce1 (13 kDa, Protein from purple sea urchin)
- Cfap96(c4orf47) (33 kDa, Protein from purple sea urchin)
- Tex49_homologue(loc580808) (20 kDa, Protein from purple sea urchin)
- C4orf45 (32 kDa, Protein from purple sea urchin)
- Cfap21 (66 kDa, Protein from purple sea urchin)
- Protein phosphatase 1 regulatory subunit 32 (52 kDa, Protein from purple sea urchin)
- Tex49 (17 kDa, Protein from purple sea urchin)
- Meiosis-specific nuclear structural protein 1 (17 kDa, Protein from purple sea urchin)
- Cfap144(fam183a) (16 kDa, Protein from purple sea urchin)
- Magnesium ion (24 Da, Ligand)
- Cilia- and flagella-associated protein 126 (15 kDa, Protein from purple sea urchin)
- Cfap68(upf0686, c11orf1) (17 kDa, Protein from purple sea urchin)
- Protein fam166b (48 kDa, Protein from purple sea urchin)
- Meiosis-specific nuclear structural protein 1 (61 kDa, Protein from purple sea urchin)
- Atp6v1fnb (21 kDa, Protein from purple sea urchin)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Cilia- and flagella-associated protein 161 (32 kDa, Protein from purple sea urchin)
48-nm doublet microtubule from Tetrahymena thermophila strain CU428
Kubo S, Black CS, Joachimiak E, Yang SK, Legal T, Peri K, Khalifa AAZ, Ghanaeian A, McCafferty CL, Valente-Paterno M, De Bellis C, Huynh PM, Fan Z, Marcotte EM, Wloga D, Bui KH
Nat Commun (2023) 14 pp. 2168-2168 [ DOI: doi:10.1038/s41467-023-37868-0 Pubmed: 37061538 ]
- Cfap143 (30 kDa, Protein from Tetrahymena thermophila)
- Cfap52a (73 kDa, Protein from Tetrahymena thermophila)
- Cfap112a (45 kDa, Protein from Tetrahymena thermophila)
- Oj2 (19 kDa, Protein from Tetrahymena thermophila)
- Rib72b (60 kDa, Protein from Tetrahymena thermophila)
- Cfap77a (28 kDa, Protein from Tetrahymena thermophila)
- Tubulin beta chain (49 kDa, Protein from Tetrahymena thermophila)
- Rib27b (26 kDa, Protein from Tetrahymena thermophila)
- Parkin co-regulated protein pacrgb (28 kDa, Protein from Tetrahymena thermophila)
- Rib43a protein (17 kDa, Protein from Tetrahymena thermophila)
- Cfap21a (48 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 45 (59 kDa, Protein from Tetrahymena thermophila)
- Flagellar microtubule protofilament ribbon protein (72 kDa, Protein from Tetrahymena thermophila)
- Oj3 (14 kDa, Protein from Tetrahymena thermophila)
- Dna polymerase delta c4-type zinc-finger protein (31 kDa, Protein from Tetrahymena thermophila)
- Ij34 (34 kDa, Protein from Tetrahymena thermophila)
- B5b6_fmip (43 kDa, Protein from Tetrahymena thermophila)
- Cfam166c (25 kDa, Protein from Tetrahymena thermophila)
- Rib22 (22 kDa, Protein from Tetrahymena thermophila)
- Cfap107 (21 kDa, Protein from Tetrahymena thermophila)
- Cfap20 (22 kDa, Protein from Tetrahymena thermophila)
- Stpg2 (33 kDa, Protein from Tetrahymena thermophila)
- Protofilament ribbon protein (34 kDa, Protein from Tetrahymena thermophila)
- Tubulin alpha chain (49 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Cfap182b (11 kDa, Protein from Tetrahymena thermophila)
- B2b3_fmip (31 kDa, Protein from Tetrahymena thermophila)
- Cfap127 (55 kDa, Protein from Tetrahymena thermophila)
- 48-nm repeat unit of microtubule doublet from tetrahymena thermophila strain cu428 (7 MDa, Cellular component from Tetrahymena thermophila)
- Rib35 (34 kDa, Protein from Tetrahymena thermophila)
- Rib27a (27 kDa, Protein from Tetrahymena thermophila)
- Nucleoside diphosphate kinase (42 kDa, Protein from Tetrahymena thermophila)
- Sb1 (17 kDa, Protein from Tetrahymena thermophila)
- Rib26 (26 kDa, Protein from Tetrahymena thermophila)
- Cfam166b (17 kDa, Protein from Tetrahymena thermophila)
- Rib38 (38 kDa, Protein from Tetrahymena thermophila)
- Cfap129 (31 kDa, Protein from Tetrahymena thermophila)
- Flagellar flij protein (12 kDa, Protein from Tetrahymena thermophila)
- Rib57 (57 kDa, Protein from Tetrahymena thermophila)
- Cfap161a (57 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Parkin co-regulated protein pacrga (36 kDa, Protein from Tetrahymena thermophila)
- Cfap53 (60 kDa, Protein from Tetrahymena thermophila)
- Stpg1a (42 kDa, Protein from Tetrahymena thermophila)
- Cfap210 (61 kDa, Protein from Tetrahymena thermophila)
- Cfap115 (110 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Nebulin (61 kDa, Protein from Tetrahymena thermophila)
- Cfam166a (25 kDa, Protein from Tetrahymena thermophila)
- Cfap182a (20 kDa, Protein from Tetrahymena thermophila)
48-nm doublet microtubule from Tetrahymena thermophila strain K40R
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8g3d
Q-score: 0.375
Kubo S, Black CS, Joachimiak E, Yang SK, Legal T, Peri K, Khalifa AAZ, Ghanaeian A, McCafferty CL, Valente-Paterno M, De Bellis C, Huynh PM, Fan Z, Marcotte EM, Wloga D, Bui KH
Nat Commun (2023) 14 pp. 2168-2168 [ DOI: doi:10.1038/s41467-023-37868-0 Pubmed: 37061538 ]
- Cfap127 (55 kDa, Protein from Tetrahymena thermophila)
- Cfap115 (110 kDa, Protein from Tetrahymena thermophila)
- B2b3_fmip (31 kDa, Protein from Tetrahymena thermophila)
- Flagellar microtugule protofilament ribbon protein (72 kDa, Protein from Tetrahymena thermophila)
- B5b6_fmip (43 kDa, Protein from Tetrahymena thermophila)
- Tubulin alpha chain (49 kDa, Protein from Tetrahymena thermophila)
- Cfap107 (21 kDa, Protein from Tetrahymena thermophila)
- Cfap77a (28 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 45 (59 kDa, Protein from Tetrahymena thermophila)
- Cfap161a (57 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 52 (73 kDa, Protein from Tetrahymena thermophila)
- Rib72b (60 kDa, Protein from Tetrahymena thermophila)
- Stpg1a (42 kDa, Protein from Tetrahymena thermophila)
- Nebulin (61 kDa, Protein from Tetrahymena thermophila)
- Dna polymerase delta c4-type zinc-finger protein (31 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rib43a protein (17 kDa, Protein from Tetrahymena thermophila)
- Rib27a (27 kDa, Protein from Tetrahymena thermophila)
- Cfap143 (30 kDa, Protein from Tetrahymena thermophila)
- Parkin co-regulated protein pacrga (36 kDa, Protein from Tetrahymena thermophila)
- Cfap21a (48 kDa, Protein from Tetrahymena thermophila)
- Oj2 (19 kDa, Protein from Tetrahymena thermophila)
- Rib57 (57 kDa, Protein from Tetrahymena thermophila)
- Rib27b (26 kDa, Protein from Tetrahymena thermophila)
- Rib26 (26 kDa, Protein from Tetrahymena thermophila)
- Protofilament ribbon protein (34 kDa, Protein from Tetrahymena thermophila)
- 48-nm repeat unit of microtubule doublet from tetrahymena thermophila strain cu428 (7 MDa, Cellular component from Tetrahymena thermophila)
- Cfap210 (61 kDa, Protein from Tetrahymena thermophila)
- Cfap129 (31 kDa, Protein from Tetrahymena thermophila)
- Parkin co-regulated protein pacrgb (28 kDa, Protein from Tetrahymena thermophila)
- Tubulin beta chain (49 kDa, Protein from Tetrahymena thermophila)
- Ij34 (34 kDa, Protein from Tetrahymena thermophila)
- Sb1 (17 kDa, Protein from Tetrahymena thermophila)
- Rib22 (22 kDa, Protein from Tetrahymena thermophila)
- Rib38 (38 kDa, Protein from Tetrahymena thermophila)
- Nucleoside diphosphate kinase (42 kDa, Protein from Tetrahymena thermophila)
- Cfam166c (25 kDa, Protein from Tetrahymena thermophila)
- Cfap182b (11 kDa, Protein from Tetrahymena thermophila)
- Cfap182a (20 kDa, Protein from Tetrahymena thermophila)
- Oj3 (14 kDa, Protein from Tetrahymena thermophila)
- Cfam166b (17 kDa, Protein from Tetrahymena thermophila)
- Stpg2 (33 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Cfap112a (45 kDa, Protein from Tetrahymena thermophila)
- Rib35 (34 kDa, Protein from Tetrahymena thermophila)
- Flagellar flij protein (12 kDa, Protein from Tetrahymena thermophila)
- Cfam166a (25 kDa, Protein from Tetrahymena thermophila)
- Cfap20 (22 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 53 (60 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-diphosphate (443 Da, Ligand)
Composite cryo-EM density map of the 48-nm repeat of the human respiratory doublet microtubule
Gui M, Croft JT, Zabeo D, Acharya V, Kollman JM, Burgoyne T, Hoog JL, Brown A
PNAS (2022) 119 pp. e2207605119-e2207605119 [ Pubmed: 36191189 DOI: doi:10.1073/pnas.2207605119 ]
- Protein fam183a (16 kDa, Protein from human)
- Upf0691 protein c9orf116 (15 kDa, Protein from human)
- Cilia- and flagella-associated protein 161 (34 kDa, Protein from human)
- Tubulin alpha-1a chain (50 kDa, Protein from human)
- Uncharacterized protein c15orf65 (13 kDa, Protein from human)
- Ef-hand domain-containing protein 1 (74 kDa, Protein from human)
- Sperm-associated antigen 8 (51 kDa, Protein from human)
- Isoform 2 of cilia- and flagella-associated protein 77 (33 kDa, Protein from human)
- Rib43a-like with coiled-coils protein 2 (45 kDa, Protein from human)
- Parkin coregulated gene protein (29 kDa, Protein from human)
- Protein fam166c (23 kDa, Protein from human)
- Cilia- and flagella-associated protein 20 (22 kDa, Protein from human)
- Cilia- and flagella-associated protein 53 (61 kDa, Protein from human)
- Sperm acrosome-associated protein 9 (25 kDa, Protein from human)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Uncharacterized protein c5orf49 (17 kDa, Protein from human)
- Doublet microtubule and associated proteins (Complex from Homo sapiens)
- Protein cfap95 (26 kDa, Protein from human)
- Cilia- and flagella-associated protein 52 (68 kDa, Protein from human)
- Protein fam166b (30 kDa, Protein from human)
- Tektin-1 (48 kDa, Protein from human)
- Cilia- and flagella-associated protein 45 (65 kDa, Protein from human)
- Tektin-4 (50 kDa, Protein from human)
- Protein cfap141 (12 kDa, Protein from human)
- Meiosis-specific nuclear structural protein 1 (60 kDa, Protein from human)
- Protein cfap107 (23 kDa, Protein from human)
- Upf0686 protein c11orf1 (17 kDa, Protein from human)
- Protein cfap210 (66 kDa, Protein from human)
- Ef-hand domain-containing family member b (93 kDa, Protein from human)
- Tubulin beta-4b chain (49 kDa, Protein from human)
- Nucleoside diphosphate kinase 7 (42 kDa, Protein from human)
- Tektin-2 (49 kDa, Protein from human)
- Magnesium ion (24 Da, Ligand)
- Tektin-3 (56 kDa, Protein from human)
- Protein flattop (19 kDa, Protein from human)
- Enkurin (29 kDa, Protein from human)
- Protein cfap276 (19 kDa, Protein from human)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ef-hand domain-containing family member c2 (87 kDa, Protein from human)