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Trypanosoma brucei mitochondrial F1Fo ATP synthase dimer
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8ap6
Q-score: 0.306
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Oligomycin sensitiviy conferring protein (28 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Cellular component from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
membrane region of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ap7
Q-score: 0.613
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 1a of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8apa
Q-score: 0.436
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Oscp (28 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Cellular component from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 1b of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8apb
Q-score: 0.415
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atptb14 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Subunit delta (20 kDa, Protein from Trypanosoma brucei brucei)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Subunit i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Oligomycin-sensivity-conferring protein (28 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 1c of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8apc
Q-score: 0.441
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Oligomycin sensitiviy conferring protein (28 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 1d of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8apd
Q-score: 0.396
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Oscp (28 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Cellular component from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 1e of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8ape
Q-score: 0.332
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Oscp (28 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 2a of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 8apf
Q-score: 0.311
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Oscp (28 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 2b of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8apg
Q-score: 0.437
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Oscp (28 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase from trypanosoma brucei (Complex from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
rotational state 2c of the Trypanosoma brucei mitochondrial ATP synthase dimer
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8aph
Q-score: 0.158
Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A
Nat Commun (2022) 13 pp. 5989-5989 [ DOI: doi:10.1038/s41467-022-33588-z Pubmed: 36220811 ]
- Atpase subunit 9, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit alpha, mitochondrial (63 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-f (17 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase, epsilon chain, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit p18, mitochondrial (21 kDa, Protein from Trypanosoma brucei brucei)
- Atpeg4 (7 kDa, Protein from Trypanosoma brucei brucei)
- Atptb11 (17 kDa, Protein from Trypanosoma brucei brucei)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Subunit-i/j (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb4 (17 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-k (14 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit epsilon, mitochondrial (8 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-g (16 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-b (12 kDa, Protein from Trypanosoma brucei brucei)
- Cardiolipin (1 kDa, Ligand)
- Atpeg3 (12 kDa, Protein from Trypanosoma brucei brucei)
- Atptb12 (11 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Oscp (28 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Atp synthase gamma subunit (34 kDa, Protein from Trypanosoma brucei brucei)
- Atptb3 (27 kDa, Protein from Trypanosoma brucei brucei)
- Atp synthase subunit beta, mitochondrial (55 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-8 (13 kDa, Protein from Trypanosoma brucei brucei)
- Atptb1 (46 kDa, Protein from Trypanosoma brucei brucei)
- Mitochondrial atp synthase dimer from trypanosoma brucei (Cellular component from Trypanosoma brucei brucei)
- Subunit-d (43 kDa, Protein from Trypanosoma brucei brucei)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptb6 (20 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit a (28 kDa, Protein from Trypanosoma brucei brucei)
- Subunit-e (10 kDa, Protein from Trypanosoma brucei brucei)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)