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Tissue biology and disease modelling

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sample_name:"70S ribosome" AND xref_links:"uniprot" AND natural_source_ncbi_code:"3562"

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EMD-6709

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Structure of the 70S chloroplast ribosome from spinach

Release date: June 14, 2017
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 5x8p
Q-score: 0.377

Ahmed T, Shi J, Bhushan S

Nucleic Acids Res (2017) 45 pp. 8581-8595 [ DOI: doi:10.1093/nar/gkx499 Pubmed: 28582576 ]

Sample:

Protein l9 (17 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l35, chloroplastic (8 kDa, Protein from Spinacia oleracea)
Protein l27 (15 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l20, chloroplastic (15 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l34, chloroplastic (6 kDa, Protein from Spinacia oleracea)
Protein cl37 (15 kDa, Protein from Spinacia oleracea)
Protein l3 (24 kDa, Protein from Spinacia oleracea)
Protein l17 (13 kDa, Protein from Spinacia oleracea)
Protein l15 (20 kDa, Protein from Spinacia oleracea)
23s rrna (911 kDa, RNA from Spinacia oleracea)
Protein s21 (16 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s6 alpha, chloroplastic (16 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s4, chloroplastic (23 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l13, chloroplastic (22 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s11, chloroplastic (14 kDa, Protein from Spinacia oleracea)
Protein cs23 (13 kDa, Protein from Spinacia oleracea)
Protein cs22 (21 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l33, chloroplastic (7 kDa, Protein from Spinacia oleracea)
Chloroplast 70s ribosome from spinach (1 MDa, Complex from Spinacia oleracea)
5s rrna (39 kDa, RNA from Spinacia oleracea)
50s ribosomal protein l31 (10 kDa, Protein from Spinacia oleracea)
Protein bthxc (5 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l23, chloroplastic (13 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s13, chloroplastic (14 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l32, chloroplastic (6 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s18, chloroplastic (12 kDa, Protein from Spinacia oleracea)
Protein s20 (12 kDa, Protein from Spinacia oleracea)
Chloroplast ribosome 30s small subunit (Complex)
50s ribosomal protein l14, chloroplastic (13 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s14, chloroplastic (11 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l16, chloroplastic (15 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l24, chloroplastic (16 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s16, chloroplastic (10 kDa, Protein from Spinacia oleracea)
Protein l18 (13 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l21, chloroplastic (22 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s12, chloroplastic (13 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s15, chloroplastic (10 kDa, Protein from Spinacia oleracea)
4.8s rrna (34 kDa, RNA from Spinacia oleracea)
50s ribosomal protein l4, chloroplastic (27 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
Protein l29 (12 kDa, Protein from Spinacia oleracea)
Chloroplast ribosome 50s large subunit (Complex)
30s ribosomal protein s8, chloroplastic (15 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l5, chloroplastic (24 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s7, chloroplastic (17 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s9, chloroplastic (17 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s2, chloroplastic (26 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l36, chloroplastic (4 kDa, Protein from Spinacia oleracea)
Protein s17 (12 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s19 alpha, chloroplastic (10 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l19, chloroplastic (17 kDa, Protein from Spinacia oleracea)
16s rrna (483 kDa, RNA from Spinacia oleracea)
Protein s10 (13 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s1, chloroplastic (40 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s5, chloroplastic (27 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l2, chloroplastic (29 kDa, Protein from Spinacia oleracea)
Protein l28 (9 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l22, chloroplastic (23 kDa, Protein from Spinacia oleracea)
Protein plastid py (26 kDa, Protein from Spinacia oleracea)
Protein l6 (20 kDa, Protein from Spinacia oleracea)
Protein cl38 (12 kDa, Protein from Spinacia oleracea)

[Show more]

EMD-3531

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Cryo-EM reconstruction of the large subunit of the chloroplast ribosome

Release date: Jan. 11, 2017
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 5mmi
Q-score: 0.469

Bieri P, Leibundgut M, Saurer M, Boehringer D, Ban N

EMBO J (2017) 36 pp. 475-486 [ DOI: doi:10.15252/embj.201695959 Pubmed: 28007896 ]

Sample:

50s ribosomal protein l31 (14 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l19, chloroplastic (26 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l32, chloroplastic (6 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l13, chloroplastic (28 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l21, chloroplastic (28 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bl27c (21 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul3c (33 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bl9c (22 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l11, chloroplastic (23 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul24c (21 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l20, chloroplastic (15 kDa, Protein from Spinacia oleracea)
23s ribosomal rna (911 kDa, RNA from Spinacia oleracea)
Plastid ribosomal protein ul29c (19 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l14, chloroplastic (13 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul5c (28 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l16, chloroplastic (15 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul4c (32 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul6c (24 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul10c (26 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l34, chloroplastic (16 kDa, Protein from Spinacia oleracea)
E-site trna (589 Da, RNA from Spinacia oleracea)
Chloroplast 70s ribosome (2 MDa, Complex from Spinacia oleracea)
4.5s ribosomal rna (34 kDa, RNA from Spinacia oleracea)
Plastid ribosomal protein ul18c (18 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l2, chloroplastic (29 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bl28c (16 kDa, Protein from Spinacia oleracea)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l23, chloroplastic (21 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l36, chloroplastic (4 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l35, chloroplastic (17 kDa, Protein from Spinacia oleracea)
5s ribosomal rna (39 kDa, RNA from Spinacia oleracea)
Plastid ribosomal protein cl37, psrp5 (15 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bl17c (14 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l33, chloroplastic (7 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul15c (29 kDa, Protein from Spinacia oleracea)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l22, chloroplastic (23 kDa, Protein from Spinacia oleracea)
50s ribosomal protein 6, chloroplastic (12 kDa, Protein from Spinacia oleracea)

[Show more]

EMD-3532

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Cryo-EM reconstruction of the small subunit of the chloroplast ribosome

Release date: Jan. 11, 2017
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5mmj
Q-score: 0.395

Bieri P, Leibundgut M, Saurer M, Boehringer D, Ban N

EMBO J (2017) 36 pp. 475-486 [ DOI: doi:10.15252/embj.201695959 Pubmed: 28007896 ]

Sample:

50s ribosomal protein l31 (14 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein us10c (21 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bs20c (20 kDa, Protein from Spinacia oleracea)
Ribosome-binding factor psrp1, chloroplastic (33 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s5, chloroplastic (33 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s4, chloroplastic (23 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s11, chloroplastic (14 kDa, Protein from Spinacia oleracea)
16s ribosomal rna (483 kDa, RNA from Spinacia oleracea)
Plastid ribosomal protein us17c (18 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s18, chloroplastic (12 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bs21c (20 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s14, chloroplastic (11 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein us9c (22 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s16, chloroplastic (10 kDa, Protein from Spinacia oleracea)
30s ribosomal protein 2, chloroplastic (28 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s12, chloroplastic (13 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s15, chloroplastic (10 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein us13c (19 kDa, Protein from Spinacia oleracea)
Chloroplast 70s ribosome (2 MDa, Complex from Spinacia oleracea)
30s ribosomal protein s3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
30s ribosomal protein 3, chloroplastic (20 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s8, chloroplastic (15 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s7, chloroplastic (17 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s19 alpha, chloroplastic (10 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s2, chloroplastic (26 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s31, chloroplastic (10 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bs1c (14 kDa, Protein from Spinacia oleracea)
Magnesium ion (24 Da, Ligand)
Plastid ribosomal protein bs6c (23 kDa, Protein from Spinacia oleracea)

[Show more]

EMD-3533

Download Map 3D View

Cryo-EM reconstruction of the 70S chloroplast ribosome

Release date: Jan. 11, 2017
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 5mmm
Q-score: 0.406

Bieri P, Leibundgut M, Saurer M, Boehringer D, Ban N

EMBO J (2017) 36 pp. 475-486 [ DOI: doi:10.15252/embj.201695959 Pubmed: 28007896 ]

Sample:

50s ribosomal protein l31 (14 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein us10c (21 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bs20c (20 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l19, chloroplastic (26 kDa, Protein from Spinacia oleracea)
Ribosome-binding factor psrp1, chloroplastic (33 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l32, chloroplastic (6 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l13, chloroplastic (28 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l21, chloroplastic (28 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bl27c (21 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul3c (33 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s5, chloroplastic (33 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bs6c (23 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s4, chloroplastic (23 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bl9c (22 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s11, chloroplastic (14 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l11, chloroplastic (23 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul24c (21 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l20, chloroplastic (15 kDa, Protein from Spinacia oleracea)
16s ribosomal rna (483 kDa, RNA from Spinacia oleracea)
Plastid ribosomal protein us17c (18 kDa, Protein from Spinacia oleracea)
23s ribosomal rna (911 kDa, RNA from Spinacia oleracea)
Plastid ribosomal protein ul29c (19 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s18, chloroplastic (12 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l14, chloroplastic (13 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul5c (28 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein us9c (22 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s14, chloroplastic (11 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l16, chloroplastic (15 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s16, chloroplastic (10 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul4c (32 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul6c (24 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bs21c (20 kDa, Protein from Spinacia oleracea)
30s ribosomal protein 2, chloroplastic (28 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul14c (14 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul10c (26 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l34, chloroplastic (16 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s12, chloroplastic (13 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s15, chloroplastic (10 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein us13c (19 kDa, Protein from Spinacia oleracea)
Trna-phe (24 kDa, RNA from Spinacia oleracea)
Chloroplast 70s ribosome (2 MDa, Complex from Spinacia oleracea)
30s ribosomal protein s3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
4.5s ribosomal rna (34 kDa, RNA from Spinacia oleracea)
30s ribosomal protein 3, chloroplastic (20 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul18c (18 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s8, chloroplastic (15 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l2, chloroplastic (29 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bl28c (16 kDa, Protein from Spinacia oleracea)
Zinc ion (65 Da, Ligand)
30s ribosomal protein s7, chloroplastic (17 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s19 alpha, chloroplastic (10 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l23, chloroplastic (21 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l36, chloroplastic (4 kDa, Protein from Spinacia oleracea)
30s ribosomal protein s2, chloroplastic (26 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l35, chloroplastic (17 kDa, Protein from Spinacia oleracea)
5s ribosomal rna (39 kDa, RNA from Spinacia oleracea)
30s ribosomal protein s31, chloroplastic (10 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein cl37, psrp5 (15 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein bs1c (14 kDa, Protein from Spinacia oleracea)
50s ribosomal protein l33, chloroplastic (7 kDa, Protein from Spinacia oleracea)
Plastid ribosomal protein ul15c (29 kDa, Protein from Spinacia oleracea)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l22, chloroplastic (23 kDa, Protein from Spinacia oleracea)
50s ribosomal protein 6, chloroplastic (12 kDa, Protein from Spinacia oleracea)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: