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Tissue biology and disease modelling

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Structural biology

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Structural biology

Heidelberg

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EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"70S ribosome" AND xref_links:"uniprot" AND author_orcid:"0000-0002-7973-2639"

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EMD-10284

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Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Release date: Oct. 23, 2019
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 6spf
Q-score: 0.461

Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A

PNAS (2019) 116 pp. 22275-22281 [ DOI: doi:10.1073/pnas.1909831116 Pubmed: 31611393 ]

Sample:

Pseudomonas aeruginosa strain pao1 23s ribosomal rna (935 kDa, RNA from Pseudomonas aeruginosa)
50s ribosomal protein l25 (20 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s7 (17 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s18 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l34 (5 kDa, Protein from Pseudomonas aeruginosa)
5s rrna (37 kDa, RNA from Pseudomonas aeruginosa)
30s ribosomal protein s2 (25 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l36 (4 kDa, Protein from Pseudomonas aeruginosa)
Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
50s ribosomal protein l4 (21 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s15 (9 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l9 (8 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s8 (14 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l31 (3 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l18 (12 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l22 (11 kDa, Protein from Pseudomonas aeruginosa)
Ribosomal protein ul29 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l30 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l14 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l20 (13 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s21 (4 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l2 (29 kDa, Protein from Pseudomonas aeruginosa)
16s rrna (493 kDa, RNA from Pseudomonas aeruginosa)
30s ribosomal protein s4 (23 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s17 (8 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s20 (9 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l19 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s16 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l15 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l24 (11 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s9 (14 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l28 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l17 (13 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s13 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s6 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l23 (10 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s10 (10 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s14 (11 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s12 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l35 (7 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l16 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l3 (22 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l32 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l27 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l6 (18 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l5 (19 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s19 (9 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l11 (14 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l13 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l21 (11 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s11 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s5 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l33 (5 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s3 (23 kDa, Protein from Pseudomonas aeruginosa)

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EMD-10280

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Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Release date: Oct. 16, 2019
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 6spb
Q-score: 0.573

Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A

PNAS (2019) 116 pp. 22275-22281 [ DOI: doi:10.1073/pnas.1909831116 Pubmed: 31611393 ]

Sample:

50s ribosomal protein l25 (20 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l34 (5 kDa, Protein from Pseudomonas aeruginosa)
5s rrna (37 kDa, RNA from Pseudomonas aeruginosa)
50s ribosomal protein l36 (4 kDa, Protein from Pseudomonas aeruginosa)
Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
50s ribosomal protein l4 (21 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l9 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l23 (10 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l31 (3 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l18 (12 kDa, Protein from Pseudomonas aeruginosa)
23s ribosomal rna (935 kDa, RNA from Pseudomonas aeruginosa)
50s ribosomal protein l22 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l29 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l30 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l14 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l20 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l19 (12 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l2 (29 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l15 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l24 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l28 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l5 (19 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l17 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l35 (7 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l16 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l3 (22 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l32 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l27 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l6 (18 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l11 (14 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l13 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l21 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l33 (5 kDa, Protein from Pseudomonas aeruginosa)

[Show more]

EMD-10281

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Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate

Release date: Oct. 16, 2019
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 6spc
Q-score: 0.444

Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A

PNAS (2019) 116 pp. 22275-22281 [ DOI: doi:10.1073/pnas.1909831116 Pubmed: 31611393 ]

Sample:

30s ribosomal protein s7 (17 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s18 (6 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s13 (12 kDa, Protein from Pseudomonas aeruginosa)
Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
30s ribosomal protein s15 (9 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s2 (24 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s8 (13 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s21 (4 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s17 (8 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s20 (9 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s16 (8 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s9 (14 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s4 (23 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s5 (15 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s6 (11 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s10 (10 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s14 (11 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s12 (13 kDa, Protein from Pseudomonas aeruginosa)
16s rrna (492 kDa, RNA from Pseudomonas aeruginosa)
30s ribosomal protein s19 (9 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s11 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s3 (23 kDa, Protein from Pseudomonas aeruginosa)

[Show more]

EMD-10282

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Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Release date: Oct. 16, 2019
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 6spd
Q-score: 0.249

Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A

PNAS (2019) 116 pp. 22275-22281 [ DOI: doi:10.1073/pnas.1909831116 Pubmed: 31611393 ]

Sample:

50s ribosomal protein l5 (19 kDa, Protein from Pseudomonas aeruginosa)
5s ribosomal rna (37 kDa, RNA from Pseudomonas aeruginosa)
50s ribosomal protein l25 (20 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l34 (5 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l36 (4 kDa, Protein from Pseudomonas aeruginosa)
Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
50s ribosomal protein l4 (21 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l31 (3 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l18 (12 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l30 (6 kDa, Protein from Pseudomonas aeruginosa)
Ribosomal protein ul29 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l14 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l23 (10 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l20 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l2 (29 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l19 (12 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l22 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l24 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l9 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l28 (8 kDa, Protein from Pseudomonas aeruginosa)
23s ribosomal rna (935 kDa, RNA from Pseudomonas aeruginosa)
50s ribosomal protein l16 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l17 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l35 (7 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l6 (18 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l3 (22 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l15 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l32 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l27 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l21 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l11 (14 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l13 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l33 (5 kDa, Protein from Pseudomonas aeruginosa)

[Show more]

EMD-10283

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Pseudomonas aeruginosa 30s ribosome from a clinical isolate

Release date: Oct. 16, 2019
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6spe
Q-score: 0.46

Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A

PNAS (2019) 116 pp. 22275-22281 [ DOI: doi:10.1073/pnas.1909831116 Pubmed: 31611393 ]

Sample:

30s ribosomal protein s7 (17 kDa, Protein from Pseudomonas aeruginosa)
Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
30s ribosomal protein s6 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s21 (7 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s15 (9 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s17 (8 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s16 (8 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s9 (14 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s4 (23 kDa, Protein from Pseudomonas aeruginosa)
16s ribosomal rna (494 kDa, RNA from Pseudomonas aeruginosa)
30s ribosomal protein s18 (8 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s13 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s10 (10 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s8 (14 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s14 (11 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s5 (16 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s19 (9 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s12 (13 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s11 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s3 (23 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s20 (9 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s2 (26 kDa, Protein from Pseudomonas aeruginosa)

[Show more]

EMD-10285

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Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Release date: Oct. 16, 2019
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 6spg
Q-score: 0.468

Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A

PNAS (2019) 116 pp. 22275-22281 [ DOI: doi:10.1073/pnas.1909831116 Pubmed: 31611393 ]

Sample:

50s ribosomal protein l25 (20 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s7 (17 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l34 (5 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l36 (4 kDa, Protein from Pseudomonas aeruginosa)
Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
50s ribosomal protein l4 (21 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l9 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l31 (3 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l18 (12 kDa, Protein from Pseudomonas aeruginosa)
23s ribosomal rna (935 kDa, RNA from Pseudomonas aeruginosa)
Ribosomal protein ul29 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l30 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l33 (5 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s6 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s21 (7 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l14 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l20 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l2 (29 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l23 (10 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s15 (9 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l19 (12 kDa, Protein from Pseudomonas aeruginosa)
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s17 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l22 (11 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s16 (8 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s9 (14 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s4 (23 kDa, Protein from Pseudomonas aeruginosa)
16s ribosomal rna (494 kDa, RNA from Pseudomonas aeruginosa)
50s ribosomal protein l24 (11 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s18 (8 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l28 (8 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s13 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s10 (10 kDa, Protein from Pseudomonas aeruginosa)
5s ribosomal rna (37 kDa, RNA from Pseudomonas aeruginosa)
50s ribosomal protein l16 (15 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s8 (14 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s14 (11 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l17 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l35 (7 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s5 (16 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l6 (18 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l3 (22 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l15 (15 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l32 (6 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l27 (8 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s19 (9 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l5 (19 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s12 (13 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l11 (14 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l13 (15 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s11 (12 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s3 (23 kDa, Protein from Pseudomonas aeruginosa)
50s ribosomal protein l21 (11 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s20 (9 kDa, Protein from Pseudomonas aeruginosa)
30s ribosomal protein s2 (26 kDa, Protein from Pseudomonas aeruginosa)

[Show more]

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Showing 1 - 6 of 6. Page 1 of 1

Display: Statistics

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Select database:

EMDB [6]

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