Electron Microscopy Data Bank

Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research. We appreciate your responses prior to closing of the survey on Monday 17th June.

Edit your search query here and hit Return to execute it:

sample_name:"5S rRNA" AND citation_journal_name:"CELL REP"

Sort by: Download

Showing 1 - 8 of 8. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [8]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

EMD-19576

Download Map 3D View

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Release date: May 15, 2024
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8rxh
Q-score: 0.603

Rajan KS, Aryal S, Hiregange DG, Bashan A, Madmoni H, Olami M, Doniger T, Cohen-Chalamish S, Pescher P, Taoka M, Nobe Y, Fedorenko A, Bose T, Zimermann E, Prina E, Aharon-Hefetz N, Pilpel Y, Isobe T, Unger R, Spath GF, Yonath A, Michaeli S

Cell Rep (2024) 43 pp. 114203-114203 [ Pubmed: 38722744 DOI: doi:10.1016/j.celrep.2024.114203 ]

Sample:

Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
Water (18 Da, Ligand)
40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
Mrna_chain_s5 (4 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
E-site_trna_chain_s4 (24 kDa, RNA from Leishmania major strain Friedlin)
Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l13 (24 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
Cryo-em structure of leishmania major 80s ribosome with a/p/e-site trna and mrna (Complex from Leishmania major strain Friedlin)
40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
Ribosomal protein s17 family protein (20 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
Ubiquitin-60s ribosomal protein l40 (17 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
Potassium ion (39 Da, Ligand)
Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Leishmania major strain Friedlin)
(2s)-2-[2-[4-[[(2r,3s,4s)-3-acetyloxy-4-oxidanyl-pyrrolidin-2-yl]methyl]phenoxy]ethanoylamino]-6-azanyl-hexanoic acid (437 Da, Ligand)
Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l10 (24 kDa, Protein from Leishmania major strain Friedlin)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
Zinc ion (65 Da, Ligand)
Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
A-site_trna_chain_s2 (24 kDa, RNA from Leishmania major strain Friedlin)
Sodium ion (22 Da, Ligand)
40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
P-site_trna_chain_s3 (24 kDa, RNA from Leishmania major strain Friedlin)
Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)

[Show more]

EMD-19582

Composite map Download Map 3D View

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : LM32Cs3H1 sKO STRAIN

Release date: May 15, 2024
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8rxx
Q-score: 0.601

Cell Rep (2024) 43 pp. 114203-114203 [ Pubmed: 38722744 DOI: doi:10.1016/j.celrep.2024.114203 ]

Sample:

Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
Water (18 Da, Ligand)
40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
Mrna_chain_s5 (4 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
E-site_trna_chain_s4 (24 kDa, RNA from Leishmania major strain Friedlin)
Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l13 (24 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
Ribosomal protein s17 family protein (20 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
80s ribosome with a/p/e-site trna and mrna (Complex from Leishmania major strain Friedlin)
Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
Ubiquitin-60s ribosomal protein l40 (17 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
Potassium ion (39 Da, Ligand)
Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l10 (24 kDa, Protein from Leishmania major strain Friedlin)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
Zinc ion (65 Da, Ligand)
Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
A-site_trna_chain_s2 (24 kDa, RNA from Leishmania major strain Friedlin)
Sodium ion (22 Da, Ligand)
40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
P-site_trna_chain_s3 (24 kDa, RNA from Leishmania major strain Friedlin)
Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)

[Show more]

EMD-17216

Composite map Download Map 3D View

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : PARENTAL STRAIN

Release date: May 8, 2024
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8ovj
Q-score: 0.63

Cell Rep (2024) 43 pp. 114203-114203 [ Pubmed: 38722744 DOI: doi:10.1016/j.celrep.2024.114203 ]

Sample:

Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
Water (18 Da, Ligand)
Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l13 (24 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
Potassium ion (39 Da, Ligand)
Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l10 (24 kDa, Protein from Leishmania major strain Friedlin)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
Zinc ion (65 Da, Ligand)
Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
80s ribosome from leishmania major (Complex from Leishmania major strain Friedlin)
40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
Sodium ion (22 Da, Ligand)
40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s11 (20 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
E-site_trna_chain_s4 (6 kDa, RNA from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
Magnesium ion (24 Da, Ligand)
Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)

[Show more]

EMD-15272

Download Map 3D View

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : snoRNA MUTANT

Release date: Oct. 11, 2023
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8a98
Q-score: 0.653

Cell Rep (2024) 43 pp. 114203-114203 [ Pubmed: 38722744 DOI: doi:10.1016/j.celrep.2024.114203 ]

Sample:

Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
El13_chain_i (24 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
E-site_trna_chain_s4 (6 kDa, RNA from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
Water (18 Da, Ligand)
40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
Small ribosomal subunit protein rack1 (34 kDa, Protein from Leishmania major strain Friedlin)
Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
Potassium ion (39 Da, Ligand)
Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
Zinc ion (65 Da, Ligand)
Cryo-em structure of leishmania major 80s ribosome snorna mutant (Complex from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
Sodium ion (22 Da, Ligand)
40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s11 (20 kDa, Protein from Leishmania major strain Friedlin)
60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
Magnesium ion (24 Da, Ligand)
Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)

[Show more]

EMD-24652

Download Map 3D View

Structure of ribosomal complex bound with Rbg1/Tma46

Release date: Nov. 10, 2021
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 7rr5
Q-score: 0.437

Zeng F, Li X, Pires-Alves M, Chen X, Hawk CW, Jin H

Cell Rep (2021) 37 pp. 109877-109877 [ Pubmed: 34706231 DOI: doi:10.1016/j.celrep.2021.109877 ]

Sample:

40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
Rpl24a isoform 1 (17 kDa, Protein from Baker's yeast)
Rps8a isoform 1 (22 kDa, Protein from Baker's yeast)
40s ribosomal protein s14-b (14 kDa, Protein from Baker's yeast)
40s ribosomal protein s6 (27 kDa, Protein from Baker's yeast)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
Mrna (5 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s24 (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
Rpl38 isoform 1 (8 kDa, Protein from Baker's yeast)
P-trna (Complex from Saccharomyces cerevisiae)
Translation machinery-associated protein 46 (39 kDa, Protein from Baker's yeast)
40s ribosomal protein s9-a (22 kDa, Protein from Baker's yeast)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l42-a (12 kDa, Protein from Baker's yeast)
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Baker's yeast)
40s ribosomal protein s17-a (15 kDa, Protein from Baker's yeast)
Mrna (Complex from Saccharomyces cerevisiae)
40s ribosomal protein s4 (29 kDa, Protein from Baker's yeast)
60s subunit (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l34-a (13 kDa, Protein from Baker's yeast)
60s ribosomal protein l25 (15 kDa, Protein from Baker's yeast)
Rps3 isoform 1 (26 kDa, Protein from Baker's yeast)
60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)
Rps26b isoform 1 (13 kDa, Protein from Baker's yeast)
40s ribosomal protein s30 (7 kDa, Protein from Baker's yeast)
Rpl12a isoform 1 (17 kDa, Protein from Baker's yeast)
40s subunit (Complex from Saccharomyces cerevisiae)
Rps15 isoform 1 (16 kDa, Protein from Baker's yeast)
60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
Rpl4a isoform 1 (39 kDa, Protein from Baker's yeast)
Rpl29 isoform 1 (6 kDa, Protein from Baker's yeast)
60s ribosomal protein l14-a (15 kDa, Protein from Baker's yeast)
40s ribosomal protein s23 (16 kDa, Protein from Baker's yeast)
Rpl11b isoform 1 (19 kDa, Protein from Baker's yeast)
Rpp0 isoform 1 (33 kDa, Protein from Baker's yeast)
A-trna (Complex from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l6 (20 kDa, Protein from Baker's yeast)
Rps5p (25 kDa, Protein from Baker's yeast)
Rps22a isoform 1 (14 kDa, Protein from Baker's yeast)
Rpl3 isoform 1 (43 kDa, Protein from Baker's yeast)
40s ribosomal protein s11-b (17 kDa, Protein from Baker's yeast)
P-trna (24 kDa, RNA from Saccharomyces cerevisiae)
Rps1a isoform 1 (28 kDa, Protein from Baker's yeast)
60s ribosomal protein l13 (22 kDa, Protein from Baker's yeast)
60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
Rpl5 isoform 1 (33 kDa, Protein from Baker's yeast)
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l2-b (27 kDa, Protein from Baker's yeast)
Aspartic acid (133 Da, Ligand)
Eukaryotic translation initiation factor 5a (17 kDa, Protein from Baker's yeast)
Rps20 isoform 1 (13 kDa, Protein from Baker's yeast)
40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
Rps25a isoform 1 (12 kDa, Protein from Baker's yeast)
60s ribosomal protein l18-b (20 kDa, Protein from Baker's yeast)
Rpl32 isoform 1 (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l41-a (3 kDa, Protein from Baker's yeast)
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l23-b (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l22-a (13 kDa, Protein from Baker's yeast)
60s ribosomal protein l43-a (10 kDa, Protein from Baker's yeast)
Rps2 isoform 1 (27 kDa, Protein from Baker's yeast)
Zinc ion (65 Da, Ligand)
Rbg1/tma46 (Complex from Saccharomyces cerevisiae)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
60s ribosomal protein l7-a (27 kDa, Protein from Baker's yeast)
60s ribosomal protein l30 (11 kDa, Protein from Baker's yeast)
Ribosomal protein l37 (9 kDa, Protein from Baker's yeast)
40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
40s ribosomal protein s18-b (17 kDa, Protein from Baker's yeast)
Ribosomal complex with rbg1/tma46 (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
Ribosome-interacting gtpase 1 (45 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s0 (28 kDa, Protein from Baker's yeast)
40s ribosomal protein s13 (17 kDa, Protein from Baker's yeast)
60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
Rpl10 isoform 1 (25 kDa, Protein from Baker's yeast)
60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
60s ribosomal protein l27 (15 kDa, Protein from Baker's yeast)
Rps28a isoform 1 (7 kDa, Protein from Baker's yeast)
60s ribosomal protein l1 (17 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s7 (21 kDa, Protein from Baker's yeast)
60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
Eif5a (Complex from Saccharomyces cerevisiae)
A-trna (24 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (28 kDa, Protein from Baker's yeast)
40s ribosomal protein s10-a (12 kDa, Protein from Baker's yeast)
40s ribosomal protein s12 (15 kDa, Protein from Baker's yeast)
Rps29a isoform 1 (6 kDa, Protein from Baker's yeast)

[Show more]

EMD-10668

Download Map 3D View

Structure of human ribosome in classical-PRE state

Release date: April 15, 2020
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6y0g
Q-score: 0.488

Bhaskar V, Graff-Meyer A, Schenk AD, Cavadini S, von Loeffelholz O, Natchiar SK, Artus-Revel CG, Hotz HR, Bretones G, Klaholz BP, Chao JA

Cell Rep (2020) 31 pp. 107473-107473 [ Pubmed: 32268098 DOI: doi:10.1016/j.celrep.2020.03.037 ]

Sample:

Human ribosomes in the classical-pre state (4 MDa, Complex from Homo sapiens)
40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
28s ribosomal rna (1 MDa, RNA from Homo sapiens)
5.8s ribosomal rna (50 kDa, RNA from Homo sapiens)
60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
18s ribosomal rna (602 kDa, RNA from Homo sapiens)
60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
Water (18 Da, Ligand)
40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
Trna (24 kDa, RNA from Homo sapiens)
40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
Mrna (8 kDa, RNA from Homo sapiens)
60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l10-like (24 kDa, Protein from Homo sapiens)
40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
Nascent peptide (188 Da, Protein from Homo sapiens)
40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
5s rrna (38 kDa, RNA from Homo sapiens)
40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)

[Show more]

EMD-3750

Download Map 3D View

Cryo-EM reconstruction of the large subunit of the Mycobacterium smegmatis ribosome

Release date: July 12, 2017
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 5o60
Q-score: 0.487

Hentschel J, Burnside C, Mignot I, Leibundgut M, Boehringer D, Ban N

Cell Rep (2017) 20 pp. 149-160 [ Pubmed: 28683309 DOI: doi:10.1016/j.celrep.2017.06.029 ]

Sample:

50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
5s rrna (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s large ribosomal subunit (Complex from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein bl37 (2 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Phenylalanine (165 Da, Ligand from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Trna cca-end acetylated (phe) (894 Da, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l33 1 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l11 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
23s rrna (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l10 (18 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l23 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis str. MC2 155)

[Show more]

EMD-3751

Download Map 3D View

Cryo-EM reconstruction of the Mycobacterium smegmatis 70S ribosome

Release date: July 12, 2017
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 5o61

Hentschel J, Burnside C, Mignot I, Leibundgut M, Boehringer D, Ban N

Cell Rep (2017) 20 pp. 149-160 [ Pubmed: 28683309 DOI: doi:10.1016/j.celrep.2017.06.029 ]

Sample:

50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
5s rrna (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
Mrna fragment (1 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
70s ribosome (Complex from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein bl37 (2 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s19 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s14 type z (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s16 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s18 2 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Phenylalanine (165 Da, Ligand from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Lsu ribosomal protein l28p (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s3 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s11 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
16s rrna (495 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s17 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l33 1 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s13 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l11 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
23s rrna (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s9 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l10 (18 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l23 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Conserved domain protein (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
P/p-site phe-trna(phe) (24 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis str. MC2 155)

[Show more]

Sort by: Download

Showing 1 - 8 of 8. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [8]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Filter By