Electron Microscopy Data Bank

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EMD-28610

Download Map 3D View

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Release date: Sept. 6, 2023
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8eub
Q-score: 0.319

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ Pubmed: 37595043 DOI: doi:10.1126/sciadv.adg8190 ]

Sample:

Rps1a isoform 1 (28 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
Rps2 isoform 1 (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae)
Rps25a isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rps15 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl24a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps5p (25 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
Rpl29 isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae)
Hypopseudouridylated ribosome with tsv ires, eef2 and gdp (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
Taura syndrome virus (tsv) internal ribosome entry site (ires) rna (64 kDa, RNA from Taura syndrome virus)
60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae)
Elongation factor 2 (93 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
Guanosine-5'-diphosphate (443 Da, Ligand)
40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
28s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
Rps3 isoform 1 (26 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
Rps20 isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rpl10 isoform 1 (25 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s0-a (28 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae)
Rpl1a isoform 1 (24 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
60s acidic ribosomal protein p0 (33 kDa, Protein from Saccharomyces cerevisiae)
Rps26b isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl11a isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20 (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)

[Show more]

EMD-28632

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Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Release date: Sept. 6, 2023
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 8evp
Q-score: 0.565

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ Pubmed: 37595043 DOI: doi:10.1126/sciadv.adg8190 ]

Sample:

Rps1a isoform 1 (28 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
Rps2 isoform 1 (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae)
Rps25a isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rps15 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl24a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps5p (25 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
Rpl29 isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae)
Hypopseudouridylated ribosome with tsv ires, eef2 and gdp (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
Rps3 isoform 1 (26 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
Rps20 isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rpl10 isoform 1 (25 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s0-a (28 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae)
Rpl1a isoform 1 (24 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
Internal ribosome entry site (64 kDa, RNA from Taura syndrome virus)
40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
5.8 s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
Rps26b isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl11a isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20 (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)

[Show more]

EMD-28633

Download Map 3D View

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Release date: Sept. 6, 2023
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 8evq
Q-score: 0.487

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ Pubmed: 37595043 DOI: doi:10.1126/sciadv.adg8190 ]

Sample:

Rps1a isoform 1 (28 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
Rps2 isoform 1 (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae)
Rps25a isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rps15 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl24a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps5p (25 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
Rpl29 isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae)
Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae)
Elongation factor 2 (93 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
Guanosine-5'-diphosphate (443 Da, Ligand)
40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
Rps3 isoform 1 (26 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
Rps20 isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
Ribosome (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rpl10 isoform 1 (25 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s0-a (28 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae)
Rpl1a isoform 1 (24 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
[1r-(1.alpha.,3a.beta.,4.beta.,4a.beta.,7.beta.,7a.alpha.,8a.beta.)]8a-[(6-deoxy-4-o-methyl-beta-d-altropyranosyloxy)methyl]-4-formyl-4,4a,5,6,7,7a,8,8a-octahydro-7-methyl-3-(1-methylethyl)-1,4-methano-s-indacene-3a(1h)-carboxylic acid (494 Da, Ligand)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
Taura syndrome virus (tsv) internal ribosome entry site (ires) rna (64 kDa, RNA from Taura syndrome virus)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
60s acidic ribosomal protein p0 (33 kDa, Protein from Saccharomyces cerevisiae)
5.8 s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
Rps26b isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl11a isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20 (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)

[Show more]

EMD-28634

Download Map 3D View

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Release date: Sept. 6, 2023
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8evr
Q-score: 0.47

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ Pubmed: 37595043 DOI: doi:10.1126/sciadv.adg8190 ]

Sample:

Rps1a isoform 1 (28 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
Rps2 isoform 1 (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae)
Rps25a isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rps15 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl24a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps5p (25 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
(1s,3s,3ar,4s,4ar,7r,7ar,8as)-8a-{[(6-deoxy-4-o-methyl-alpha-d-altropyranosyl)oxy]methyl}-4-formyl-7-methyl-3-(propan-2-yl)decahydro-1,4-methano-s-indacene-3a(1h)-carboxylate (493 Da, Ligand)
Rpl29 isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae)
Hypopseudouridylated ribosome with tsv ires, eef2 and gdp (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae)
Elongation factor 2 (93 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
Guanosine-5'-diphosphate (443 Da, Ligand)
40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
Rps3 isoform 1 (26 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
Rps20 isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rpl10 isoform 1 (25 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s0-a (28 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae)
Rpl1a isoform 1 (24 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
60s acidic ribosomal protein p0 (33 kDa, Protein from Saccharomyces cerevisiae)
5.8 s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
Rps26b isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl11a isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
Tsv ires (64 kDa, RNA from Taura syndrome virus)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20 (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)

[Show more]

EMD-28635

Download Map 3D View

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Release date: Sept. 6, 2023
Resolution: 2.62 Å
EM Method: Single-particle
Fitted PDBs: 8evs
Q-score: 0.513

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ Pubmed: 37595043 DOI: doi:10.1126/sciadv.adg8190 ]

Sample:

Rps1a isoform 1 (28 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
Rps2 isoform 1 (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae)
Rps25a isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rps15 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl24a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps5p (25 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
Rpl29 isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae)
Hypopseudouridylated ribosome with tsv ires, eef2 and gdp (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae)
Elongation factor 2 (93 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
Guanosine-5'-diphosphate (443 Da, Ligand)
40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
Rps3 isoform 1 (26 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
Rps20 isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rpl10 isoform 1 (25 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s0-a (28 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae)
Rpl1a isoform 1 (24 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
Tsv ires (64 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
60s acidic ribosomal protein p0 (33 kDa, Protein from Saccharomyces cerevisiae)
5.8 s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
Rps26b isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl11a isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20 (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)

[Show more]

EMD-28636

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Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Release date: Sept. 6, 2023
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8evt
Q-score: 0.626

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ Pubmed: 37595043 DOI: doi:10.1126/sciadv.adg8190 ]

Sample:

Rps1a isoform 1 (28 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
Rps2 isoform 1 (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae)
Rps25a isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rps15 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl24a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps5p (25 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
Rpl29 isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae)
Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
Rps3 isoform 1 (26 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
Rps20 isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rpl10 isoform 1 (25 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s0-a (28 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae)
Rpl1a isoform 1 (24 kDa, Protein from Saccharomyces cerevisiae)
Hypopseudouridylated ribosome (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
Tsv ires (64 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
5.8 s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
Rps26b isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl11a isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20 (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)

[Show more]

EMD-28642

Download Map 3D View

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Release date: Sept. 6, 2023
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8ewb
Q-score: 0.515

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ Pubmed: 37595043 DOI: doi:10.1126/sciadv.adg8190 ]

Sample:

Rps1a isoform 1 (28 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
Rps2 isoform 1 (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae)
Rps25a isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rps15 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl24a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps5p (25 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
Rpl29 isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae)
Hypopseudouridylated ribosome with tsv ires, eef2 and gdp (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae)
Elongation factor 2 (93 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
Guanosine-5'-diphosphate (443 Da, Ligand)
40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
Rps3 isoform 1 (26 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
Rps20 isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rpl10 isoform 1 (25 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s0-a (28 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae)
Rpl1a isoform 1 (24 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
Taura syndrome virus (tsv) internal ribosome entry site (ires) rna (64 kDa, RNA from Taura syndrome virus)
60s acidic ribosomal protein p0 (33 kDa, Protein from Saccharomyces cerevisiae)
5.8 s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
Rps26b isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl11a isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20 (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)

[Show more]

EMD-28643

Download Map 3D View

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Release date: Sept. 6, 2023
Resolution: 2.45 Å
EM Method: Single-particle
Fitted PDBs: 8ewc
Q-score: 0.532

Zhao Y, Rai J, Li H

Sci Adv (2023) 9 pp. eadg8190-eadg8190 [ Pubmed: 37595043 DOI: doi:10.1126/sciadv.adg8190 ]

Sample:

Rps1a isoform 1 (28 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
Rps2 isoform 1 (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae)
Rps25a isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rps15 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl24a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps5p (25 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
Rpl29 isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae)
Hypopseudouridylated ribosome with tsv ires, eef2 and gdp (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
Rps3 isoform 1 (26 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
Rps20 isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
Internal ribosome entry site (ires) (64 kDa, RNA from Taura syndrome virus)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
Rpl10 isoform 1 (25 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s0-a (28 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae)
Rpl1a isoform 1 (24 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
5.8 s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
Rps26b isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl11a isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20 (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)

[Show more]

EMD-23934

Download Map 3D View

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Release date: May 11, 2022
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7mpi
Q-score: 0.538

Zhao Y, Rai J, Yu H, Li H

Structure (2022) 30 pp. 983- [ DOI: doi:10.1016/j.str.2022.04.002 Pubmed: 35489333 ]

Sample:

60s ribosomal protein l7-a (25 kDa, Protein from Baker's yeast)
60s ribosomal protein l14-a (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l10 (23 kDa, Protein from Baker's yeast)
60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
40s ribosomal protein s2 (23 kDa, Protein from Baker's yeast)
25s rrna (1 MDa, RNA from Baker's yeast)
40s ribosomal protein s5 (22 kDa, Protein from Baker's yeast)
40s ribosomal protein s8-a (21 kDa, Protein from Baker's yeast)
60s ribosomal protein l2-a (26 kDa, Protein from Baker's yeast)
40s ribosomal protein s15 (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l24-a (7 kDa, Protein from Baker's yeast)
5s rrna (38 kDa, RNA from Baker's yeast)
40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)
40s ribosomal protein s31 (6 kDa, Protein from Baker's yeast)
40s ribosomal protein s12 (13 kDa, Protein from Baker's yeast)
60s ribosomal protein l13-a (21 kDa, Protein from Baker's yeast)
40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
60s ribosomal protein l34-a (12 kDa, Protein from Baker's yeast)
40s ribosomal protein s11-a (17 kDa, Protein from Baker's yeast)
40s ribosomal protein s20 (12 kDa, Protein from Baker's yeast)
40s ribosomal protein s9-a (21 kDa, Protein from Baker's yeast)
40s ribosomal protein s26-b (11 kDa, Protein from Baker's yeast)
60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
40s ribosomal protein s6-a (25 kDa, Protein from Baker's yeast)
60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
40s ribosomal protein s14-a (13 kDa, Protein from Baker's yeast)
60s ribosomal protein l17-a (19 kDa, Protein from Baker's yeast)
60s ribosomal protein l25 (13 kDa, Protein from Baker's yeast)
60s ribosomal protein l22-a (11 kDa, Protein from Baker's yeast)
60s ribosomal protein l8-a (25 kDa, Protein from Baker's yeast)
40s ribosomal protein s25-a (7 kDa, Protein from Baker's yeast)
40s ribosomal protein s18-a (16 kDa, Protein from Baker's yeast)
60s ribosomal protein l41-a (3 kDa, Protein from Baker's yeast)
60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
40s ribosomal protein s1-a (24 kDa, Protein from Baker's yeast)
Composite map of stm1 bound vacant 80s structure isolated from cbf5-d95a (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
60s ribosomal protein l30 (10 kDa, Protein from Baker's yeast)
40s ribosomal protein s13 (16 kDa, Protein from Baker's yeast)
60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
18s rrna (574 kDa, RNA from Baker's yeast)
Zinc ion (65 Da, Ligand)
5.8 s rrna (50 kDa, RNA from Baker's yeast)
40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
60s ribosomal protein l43-a (9 kDa, Protein from Baker's yeast)
60s subunit of stm1 bound vacant 80s structure isolated from cbf5-d95a (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l6-a (17 kDa, Protein from Baker's yeast)
40s ribosomal protein s0-a (22 kDa, Protein from Baker's yeast)
Suppressor protein stm1 (9 kDa, Protein from Baker's yeast)
40s-body of stm1 bound vacant 80s structure isolated from cbf5-d95a (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l11-a (19 kDa, Protein from Baker's yeast)
40s ribosomal protein s3 (24 kDa, Protein from Baker's yeast)
40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
40s ribosomal protein s23-a (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
40s ribosomal protein s30-a (6 kDa, Protein from Baker's yeast)
60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
40s ribosomal protein s17-a (13 kDa, Protein from Baker's yeast)
60s ribosomal protein l40-a (6 kDa, Protein from Baker's yeast)
60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
40s ribosomal protein s10-a (11 kDa, Protein from Baker's yeast)
40s ribosomal protein s29-a (6 kDa, Protein from Baker's yeast)
60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
60s ribosomal protein l29 (6 kDa, Protein from Baker's yeast)
40s-head of stm1 bound vacant 80s structure isolated from cbf5-d95a (Complex from Saccharomyces cerevisiae)
40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
60s ribosomal protein l42-a (12 kDa, Protein from Baker's yeast)
40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)

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EMD-23935

Download Map 3D View

Stm1 bound vacant 80S structure isolated from wild-type

Release date: May 11, 2022
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7mpj
Q-score: 0.613

Zhao Y, Rai J, Yu H, Li H

Structure (2022) 30 pp. 983- [ DOI: doi:10.1016/j.str.2022.04.002 Pubmed: 35489333 ]

Sample:

18s rrna (574 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
40s-body of stm1 bound vacant 80s structure isolated from nop1-d243a. (Complex from Saccharomyces cerevisiae)
40s ribosomal protein s6-a (25 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s23-a (15 kDa, Protein from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
Composite map (Cellular component from Saccharomyces cerevisiae)
60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s17-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (19 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s18-a (16 kDa, Protein from Saccharomyces cerevisiae)
60s subnit of stm1 bound vacant 80s structure isolated from nop1-d243a. (Complex from Saccharomyces cerevisiae)
40s ribosomal protein s22-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s28-a (7 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l40-a (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l24-a (7 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l43-a (9 kDa, Protein from Saccharomyces cerevisiae)
Suppressor protein stm1 (9 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s26-a (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s12 (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l2-a (26 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s10-a (11 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (21 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s31 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s1-a (24 kDa, Protein from Saccharomyces cerevisiae)
40s head of stm1 bound vacant 80s structure isolated from nop1-d243a. (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l6-a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l10 (23 kDa, Protein from Saccharomyces cerevisiae)
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s5 (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s15 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s25-a (7 kDa, Protein from Saccharomyces cerevisiae)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s20 (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s2 (23 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (11 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s9-a (21 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s0-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l30 (10 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l25 (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (25 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s30-a (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l34-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s8-a (21 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s14-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s13 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (25 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s29-a (6 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s3 (24 kDa, Protein from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l14-a (14 kDa, Protein from Saccharomyces cerevisiae)

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