Electron Microscopy Data Bank

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sample_name:"5S rRNA" AND author_name:"Mackens-kiani T"

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EMD-18901

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Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Release date: Jan. 17, 2024
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 8r55
Q-score: 0.386

Park EN, Mackens-Kiani T, Berhane R, Esser H, Erdenebat C, Burroughs AM, Berninghausen O, Aravind L, Beckmann R, Green R, Buskirk AR

EMBO J (2024) 43 pp. 484-506 [ DOI: doi:10.1038/s44318-023-00010-3 Pubmed: 38177497 ]

Sample:

B. subtilis endonuclease muts2 binding the collided ribosome interface (Complex from Bacillus subtilis)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis)
Trna (73-mer) (23 kDa, RNA from Bacillus subtilis)
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl33 (5 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis)
Trna (77-mer) (24 kDa, RNA from Bacillus subtilis)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul23 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl28 (6 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl27 (8 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul2 (30 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis)
Endonuclease muts2 (87 kDa, Protein from Bacillus subtilis)
Muts2-disome complex from b. subtilis, focus refined, collided 70s (Complex from Bacillus subtilis)
Large ribosomal subunit protein bl17 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis)
5s rrna (112-mer) (36 kDa, RNA from Bacillus subtilis)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl34 (5 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl31 (7 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul24 (10 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis)
16s rrna (1533-mer) (496 kDa, RNA from Bacillus subtilis)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s14 type z (7 kDa, Protein from Bacillus subtilis)
Mrna (33-mer) (10 kDa, RNA from Bacillus subtilis)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul6 (19 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Bacillus subtilis)
23s rna (2887-mer) (949 kDa, RNA from Bacillus subtilis)
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis)

[Show more]

EMD-18558

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Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Release date: Dec. 27, 2023
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8qpp
Q-score: 0.415

Park EN, Mackens-Kiani T, Berhane R, Esser H, Erdenebat C, Burroughs AM, Berninghausen O, Aravind L, Beckmann R, Green R, Buskirk AR

EMBO J (2024) 43 pp. 484-506 [ DOI: doi:10.1038/s44318-023-00010-3 Pubmed: 38177497 ]

Sample:

Large ribosomal subunit protein ul16 (15 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis)
23s ribosomal rna (949 kDa, RNA from Bacillus subtilis)
50s ribosomal protein l9 (16 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl33 (5 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis)
Trna (77-mer) (24 kDa, RNA from Bacillus subtilis)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul23 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl28 (6 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl27 (8 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul2 (30 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis)
Endonuclease muts2 (87 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl17 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis)
5s rrna (112-mer) (36 kDa, RNA from Bacillus subtilis)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl34 (5 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein bl31 (7 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul24 (10 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis)
16s rrna (1533-mer) (496 kDa, RNA from Bacillus subtilis)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s14 type z (7 kDa, Protein from Bacillus subtilis)
Mrna (33-mer) (10 kDa, RNA from Bacillus subtilis)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul6 (19 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Bacillus subtilis)
Muts2-disome complex from b. subtilis, focus refined, stalled 70s (Complex from Bacillus subtilis)
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis)

[Show more]

EMD-16182

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Yeast 80S ribosome in complex with Map1 (conformation 1)

Release date: March 22, 2023
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8bqd
Q-score: 0.26

Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R

PLoS Biol (2023) 21 pp. e3001995-e3001995 [ Pubmed: 37079644 DOI: doi:10.1371/journal.pbio.3001995 ]

Sample:

40s ribosomal protein s12 (13 kDa, Protein from baker's yeast)
60s ribosomal protein l21-a (18 kDa, Protein from baker's yeast)
60s ribosomal protein l34-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l42-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l14-a (14 kDa, Protein from baker's yeast)
Rps5p (22 kDa, Protein from baker's yeast)
60s ribosomal protein l22-a (11 kDa, Protein from baker's yeast)
5.8s rrna (50 kDa, RNA from baker's yeast)
40s ribosomal protein s18-a (16 kDa, Protein from baker's yeast)
Rpl11b isoform 1 (19 kDa, Protein from baker's yeast)
40s ribosomal protein s9-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l15-a (24 kDa, Protein from baker's yeast)
Rpl38 isoform 1 (8 kDa, Protein from baker's yeast)
40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
25s rrna (1 MDa, RNA from baker's yeast)
Rpl5 isoform 1 (33 kDa, Protein from baker's yeast)
Rps28a isoform 1 (7 kDa, Protein from baker's yeast)
60s ribosomal protein l30 (10 kDa, Protein from baker's yeast)
40s ribosomal protein s8-b (22 kDa, Protein from baker's yeast)
60s ribosomal protein l37-a (9 kDa, Protein from baker's yeast)
60s ribosomal protein l16-a (22 kDa, Protein from baker's yeast)
60s ribosomal protein l1-a (24 kDa, Protein from baker's yeast)
60s ribosomal protein l8-a (25 kDa, Protein from baker's yeast)
60s ribosomal protein l2-a (27 kDa, Protein from baker's yeast)
60s ribosomal protein l27-a (15 kDa, Protein from baker's yeast)
40s ribosomal protein s25 (9 kDa, Protein from baker's yeast)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from baker's yeast)
Rpl32 isoform 1 (14 kDa, Protein from baker's yeast)
40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
60s ribosomal protein l23-a (14 kDa, Protein from baker's yeast)
40s ribosomal protein s6-a (26 kDa, Protein from baker's yeast)
Rps29a isoform 1 (6 kDa, Protein from baker's yeast)
60s ribosomal protein l13-a (21 kDa, Protein from baker's yeast)
40s ribosomal protein s31 (8 kDa, Protein from baker's yeast)
40s ribosomal protein s30-a (6 kDa, Protein from baker's yeast)
40s ribosomal protein s1-a (26 kDa, Protein from baker's yeast)
60s ribosomal protein l3 (43 kDa, Protein from baker's yeast)
40s ribosomal protein s14-b (13 kDa, Protein from baker's yeast)
60s ribosomal protein l31-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l24-a (14 kDa, Protein from baker's yeast)
Rpl4a isoform 1 (39 kDa, Protein from baker's yeast)
60s ribosomal protein l40-a (6 kDa, Protein from baker's yeast)
60s ribosomal protein l20-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l6-b (19 kDa, Protein from baker's yeast)
40s ribosomal protein s23-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l33-a (12 kDa, Protein from baker's yeast)
Rps3 isoform 1 (24 kDa, Protein from baker's yeast)
60s ribosomal protein l29 (6 kDa, Protein from baker's yeast)
60s ribosomal protein l26-a (14 kDa, Protein from baker's yeast)
40s ribosomal protein s13 (16 kDa, Protein from baker's yeast)
40s ribosomal protein s15 (16 kDa, Protein from baker's yeast)
40s ribosomal protein s21-a (9 kDa, Protein from baker's yeast)
Rps26b isoform 1 (11 kDa, Protein from baker's yeast)
40s ribosomal protein s0-a (22 kDa, Protein from baker's yeast)
18s rrna (579 kDa, RNA from baker's yeast)
60s ribosomal protein l39 (6 kDa, Protein from baker's yeast)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s10-a (11 kDa, Protein from baker's yeast)
Methionine aminopeptidase 1 (43 kDa, Protein from baker's yeast)
Rps22a isoform 1 (14 kDa, Protein from baker's yeast)
60s ribosomal protein l17-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l28 (16 kDa, Protein from baker's yeast)
Yeast 80s ribosome in complex with map1 (Complex from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from baker's yeast)
60s ribosomal protein l18-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l36-a (11 kDa, Protein from baker's yeast)
Rpl10 isoform 1 (25 kDa, Protein from baker's yeast)
Rps20 isoform 1 (11 kDa, Protein from baker's yeast)
40s ribosomal protein s19-a (15 kDa, Protein from baker's yeast)
40s ribosomal protein s11-a (16 kDa, Protein from baker's yeast)
60s ribosomal protein l43-a (9 kDa, Protein from baker's yeast)
40s ribosomal protein s16-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l41 (3 kDa, Protein from baker's yeast)
40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
60s ribosomal protein l7-a (25 kDa, Protein from baker's yeast)
60s ribosomal protein l35-a (13 kDa, Protein from baker's yeast)
40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l19-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l25 (13 kDa, Protein from baker's yeast)
40s ribosomal protein s17-a (14 kDa, Protein from baker's yeast)
Rps2 isoform 1 (23 kDa, Protein from baker's yeast)
Rpl9a isoform 1 (21 kDa, Protein from baker's yeast)

[Show more]

EMD-16191

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Yeast 80S ribosome in complex with Map1 (conformation 2)

Release date: March 22, 2023
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8bqx
Q-score: 0.264

Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R

PLoS Biol (2023) 21 pp. e3001995-e3001995 [ Pubmed: 37079644 DOI: doi:10.1371/journal.pbio.3001995 ]

Sample:

40s ribosomal protein s12 (13 kDa, Protein from baker's yeast)
60s ribosomal protein l21-a (18 kDa, Protein from baker's yeast)
60s ribosomal protein l34-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l4-a (39 kDa, Protein from baker's yeast)
60s ribosomal protein l42-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l14-a (14 kDa, Protein from baker's yeast)
40s ribosomal protein s22-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l22-a (11 kDa, Protein from baker's yeast)
5.8s rrna (50 kDa, RNA from baker's yeast)
40s ribosomal protein s18-a (16 kDa, Protein from baker's yeast)
Rpl11b isoform 1 (19 kDa, Protein from baker's yeast)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s3 (24 kDa, Protein from baker's yeast)
40s ribosomal protein s9-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l15-a (24 kDa, Protein from baker's yeast)
Rpl38 isoform 1 (8 kDa, Protein from baker's yeast)
40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l30 (10 kDa, Protein from baker's yeast)
60s ribosomal protein l37-a (9 kDa, Protein from baker's yeast)
60s ribosomal protein l16-a (22 kDa, Protein from baker's yeast)
60s ribosomal protein l1-a (24 kDa, Protein from baker's yeast)
60s ribosomal protein l8-a (25 kDa, Protein from baker's yeast)
60s ribosomal protein l2-a (27 kDa, Protein from baker's yeast)
60s ribosomal protein l27-a (15 kDa, Protein from baker's yeast)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from baker's yeast)
Rpl32 isoform 1 (14 kDa, Protein from baker's yeast)
40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
60s ribosomal protein l23-a (14 kDa, Protein from baker's yeast)
40s ribosomal protein s6-a (26 kDa, Protein from baker's yeast)
40s ribosomal protein s28-a (7 kDa, Protein from baker's yeast)
60s ribosomal protein l13-a (21 kDa, Protein from baker's yeast)
40s ribosomal protein s31 (8 kDa, Protein from baker's yeast)
40s ribosomal protein s30-a (6 kDa, Protein from baker's yeast)
40s ribosomal protein s8-a (22 kDa, Protein from baker's yeast)
40s ribosomal protein s1-a (26 kDa, Protein from baker's yeast)
60s ribosomal protein l3 (43 kDa, Protein from baker's yeast)
40s ribosomal protein s25-a (9 kDa, Protein from baker's yeast)
40s ribosomal protein s14-b (13 kDa, Protein from baker's yeast)
60s ribosomal protein l31-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l24-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l40-a (6 kDa, Protein from baker's yeast)
60s ribosomal protein l20-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l6-b (19 kDa, Protein from baker's yeast)
40s ribosomal protein s23-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l33-a (12 kDa, Protein from baker's yeast)
40s ribosomal protein s2 (23 kDa, Protein from baker's yeast)
60s ribosomal protein l29 (6 kDa, Protein from baker's yeast)
40s ribosomal protein s20 (11 kDa, Protein from baker's yeast)
60s ribosomal protein l26-a (14 kDa, Protein from baker's yeast)
40s ribosomal protein s13 (16 kDa, Protein from baker's yeast)
40s ribosomal protein s5 (22 kDa, Protein from baker's yeast)
40s ribosomal protein s15 (16 kDa, Protein from baker's yeast)
40s ribosomal protein s21-a (9 kDa, Protein from baker's yeast)
40s ribosomal protein s0-a (22 kDa, Protein from baker's yeast)
18s rrna (579 kDa, RNA from baker's yeast)
60s ribosomal protein l39 (6 kDa, Protein from baker's yeast)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s29-a (6 kDa, Protein from baker's yeast)
Methionine aminopeptidase 1 (43 kDa, Protein from baker's yeast)
40s ribosomal protein s10-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l9-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l17-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l28 (16 kDa, Protein from baker's yeast)
Yeast 80s ribosome in complex with map1 (Complex from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from baker's yeast)
60s ribosomal protein l18-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l36-a (11 kDa, Protein from baker's yeast)
Rpl10 isoform 1 (25 kDa, Protein from baker's yeast)
40s ribosomal protein s19-a (15 kDa, Protein from baker's yeast)
40s ribosomal protein s11-a (16 kDa, Protein from baker's yeast)
60s ribosomal protein l43-a (9 kDa, Protein from baker's yeast)
40s ribosomal protein s26-b (11 kDa, Protein from baker's yeast)
40s ribosomal protein s16-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l41-a (3 kDa, Protein from baker's yeast)
40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
60s ribosomal protein l7-a (25 kDa, Protein from baker's yeast)
60s ribosomal protein l35-a (13 kDa, Protein from baker's yeast)
40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l5 (33 kDa, Protein from baker's yeast)
60s ribosomal protein l19-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l25 (13 kDa, Protein from baker's yeast)
40s ribosomal protein s17-a (14 kDa, Protein from baker's yeast)

[Show more]

EMD-16086

Download Map 3D View

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Release date: Feb. 8, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8bip
Q-score: 0.451

Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R

PLoS Biol (2023) 21 pp. e3001995-e3001995 [ Pubmed: 37079644 DOI: doi:10.1371/journal.pbio.3001995 ]

Sample:

60s ribosomal protein l21-a (18 kDa, Protein from baker's yeast)
60s ribosomal protein l34-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l2-a (27 kDa, Protein from baker's yeast)
60s ribosomal protein l4-a (39 kDa, Protein from baker's yeast)
5s rrna (38 kDa, RNA from baker's yeast)
60s ribosomal protein l27-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l38 (8 kDa, Protein from baker's yeast)
60s ribosomal protein l18-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l36-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l42-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l29 (6 kDa, Protein from baker's yeast)
60s ribosomal protein l14-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l11-b (19 kDa, Protein from baker's yeast)
60s ribosomal protein l23-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l6-b (19 kDa, Protein from baker's yeast)
5.8s rrna (50 kDa, RNA from baker's yeast)
60s ribosomal protein l22-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l26-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l43-a (9 kDa, Protein from baker's yeast)
Nascent peptide chain (1 kDa, Protein from baker's yeast)
Large ribosomal subunit of a yeast 80s ribosome with natb-complex (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l24-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l41-a (3 kDa, Protein from baker's yeast)
60s ribosomal protein l15-a (24 kDa, Protein from baker's yeast)
60s ribosomal protein l3 (43 kDa, Protein from baker's yeast)
N-terminal acetyltransferase b complex subunit mdm20 (92 kDa, Protein from baker's yeast)
60s ribosomal protein l7-a (25 kDa, Protein from baker's yeast)
60s ribosomal protein l35-a (13 kDa, Protein from baker's yeast)
60s ribosomal protein l39 (6 kDa, Protein from baker's yeast)
Zinc ion (65 Da, Ligand)
25s rrna (1 MDa, RNA from baker's yeast)
60s ribosomal protein l31-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l5 (33 kDa, Protein from baker's yeast)
60s ribosomal protein l19-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l30 (10 kDa, Protein from baker's yeast)
60s ribosomal protein l32 (14 kDa, Protein from baker's yeast)
60s ribosomal protein l9-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l10 (25 kDa, Protein from baker's yeast)
60s ribosomal protein l17-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l28 (16 kDa, Protein from baker's yeast)
N-terminal acetyltransferase b complex catalytic subunit nat3 (22 kDa, Protein from baker's yeast)
60s ribosomal protein l16-a (22 kDa, Protein from baker's yeast)
60s ribosomal protein l25 (13 kDa, Protein from baker's yeast)
60s ribosomal protein l20-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l37-a (9 kDa, Protein from baker's yeast)
60s ribosomal protein l40-a (6 kDa, Protein from baker's yeast)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l8-a (25 kDa, Protein from baker's yeast)
60s ribosomal protein l33-a (12 kDa, Protein from baker's yeast)

[Show more]

EMD-16090

Download Map 3D View

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Release date: Feb. 8, 2023
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8bjq
Q-score: 0.337

Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R

PLoS Biol (2023) 21 pp. e3001995-e3001995 [ Pubmed: 37079644 DOI: doi:10.1371/journal.pbio.3001995 ]

Sample:

60s ribosomal protein l21-a (18 kDa, Protein from baker's yeast)
60s ribosomal protein l34-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l2-a (27 kDa, Protein from baker's yeast)
60s ribosomal protein l4-a (39 kDa, Protein from baker's yeast)
5s rrna (38 kDa, RNA from baker's yeast)
60s ribosomal protein l27-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l38 (8 kDa, Protein from baker's yeast)
60s ribosomal protein l18-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l36-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l42-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l29 (6 kDa, Protein from baker's yeast)
60s ribosomal protein l14-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l11-b (19 kDa, Protein from baker's yeast)
60s ribosomal protein l23-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l6-b (19 kDa, Protein from baker's yeast)
5.8s rrna (50 kDa, RNA from baker's yeast)
60s ribosomal protein l22-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l26-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l43-a (9 kDa, Protein from baker's yeast)
Large ribosomal subunit of a yeast 80s ribosome with natb-complex (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l24-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l41-a (3 kDa, Protein from baker's yeast)
60s ribosomal protein l15-a (24 kDa, Protein from baker's yeast)
N-terminal acetyltransferase b complex subunit mdm20 (92 kDa, Protein from baker's yeast)
60s ribosomal protein l3 (43 kDa, Protein from baker's yeast)
60s ribosomal protein l7-a (25 kDa, Protein from baker's yeast)
60s ribosomal protein l35-a (13 kDa, Protein from baker's yeast)
60s ribosomal protein l39 (6 kDa, Protein from baker's yeast)
Zinc ion (65 Da, Ligand)
25s rrna (1 MDa, RNA from baker's yeast)
60s ribosomal protein l31-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l5 (33 kDa, Protein from baker's yeast)
60s ribosomal protein l19-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l30 (10 kDa, Protein from baker's yeast)
60s ribosomal protein l32 (14 kDa, Protein from baker's yeast)
60s ribosomal protein l9-a (21 kDa, Protein from baker's yeast)
N-terminal acetyltransferase b complex catalytic subunit nat3 (22 kDa, Protein from baker's yeast)
60s ribosomal protein l10 (25 kDa, Protein from baker's yeast)
60s ribosomal protein l17-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l28 (16 kDa, Protein from baker's yeast)
60s ribosomal protein l16-a (22 kDa, Protein from baker's yeast)
60s ribosomal protein l25 (13 kDa, Protein from baker's yeast)
60s ribosomal protein l20-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l37-a (9 kDa, Protein from baker's yeast)
60s ribosomal protein l40-a (6 kDa, Protein from baker's yeast)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l8-a (25 kDa, Protein from baker's yeast)
60s ribosomal protein l33-a (12 kDa, Protein from baker's yeast)

[Show more]

EMD-11096

Download Map 3D View

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Release date: July 29, 2020
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6z6j
Q-score: 0.482

Wells JN, Buschauer R, Mackens-Kiani T, Best K, Kratzat H, Berninghausen O, Becker T, Gilbert W, Cheng J, Beckmann R

PLoS Biol (2020) 18 pp. e3000780-e3000780 [ DOI: doi:10.1371/journal.pbio.3000780 Pubmed: 32687489 ]

Sample:

60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s2 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s29-a (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s5 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Lso2-80s ribosome (Complex from Saccharomyces cerevisiae ATCC 204508 / S288c)
40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s20 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s22-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s26-b (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l10 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s1-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s3 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Protein lso2 (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Zinc ion (65 Da, Ligand)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s0-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s15 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l24-a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s25-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s28-a (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l41-b (3 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))

[Show more]

EMD-11097

Download Map 3D View

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Release date: July 29, 2020
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6z6k
Q-score: 0.494

Wells JN, Buschauer R, Mackens-Kiani T, Best K, Kratzat H, Berninghausen O, Becker T, Gilbert W, Cheng J, Beckmann R

PLoS Biol (2020) 18 pp. e3000780-e3000780 [ DOI: doi:10.1371/journal.pbio.3000780 Pubmed: 32687489 ]

Sample:

60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Lso2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Lso2-80s ribosome (Complex)
40s ribosomal protein s2 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s29-a (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Protein lso2 (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
80s ribosome (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s20 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s22-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s26-b (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l10 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s1-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s3 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Rps5p (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Zinc ion (65 Da, Ligand)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s0-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s15 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l24-a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s25-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s28-a (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))

[Show more]

EMD-11098

Download Map 3D View

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Release date: July 29, 2020
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6z6l
Q-score: 0.499

Wells JN, Buschauer R, Mackens-Kiani T, Best K, Kratzat H, Berninghausen O, Becker T, Gilbert W, Cheng J, Beckmann R

PLoS Biol (2020) 18 pp. e3000780-e3000780 [ DOI: doi:10.1371/journal.pbio.3000780 Pubmed: 32687489 ]

Sample:

40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l10a (24 kDa, Protein from Homo sapiens)
40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
Coiled-coil domain-containing protein 124 (25 kDa, Protein from Homo sapiens)
40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
Proliferation-associated protein 2g4 (43 kDa, Protein from Homo sapiens)
60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
5.8s rrna (50 kDa, RNA from Homo sapiens)
60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
18s rrna (602 kDa, RNA from Homo sapiens)
60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
5s rrna (38 kDa, RNA from Homo sapiens)
60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
28s rrna (1 MDa, RNA from Homo sapiens)
60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l10-like (24 kDa, Protein from Homo sapiens)
40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
Trna (24 kDa, RNA from Homo sapiens)
60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
Ccdc124-80s ribosome (Complex from Homo sapiens)

[Show more]

EMD-11099

Download Map 3D View

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Release date: July 29, 2020
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6z6m
Q-score: 0.474

Wells JN, Buschauer R, Mackens-Kiani T, Best K, Kratzat H, Berninghausen O, Becker T, Gilbert W, Cheng J, Beckmann R

PLoS Biol (2020) 18 pp. e3000780-e3000780 [ DOI: doi:10.1371/journal.pbio.3000780 Pubmed: 32687489 ]

Sample:

40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
Trna (27 kDa, RNA from Homo sapiens)
40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l10a (24 kDa, Protein from Homo sapiens)
40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
Plasminogen activator inhibitor 1 rna-binding protein (45 kDa, Protein from Homo sapiens)
40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
28s rrna (1 MDa, RNA from Homo sapiens)
Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
Proliferation-associated protein 2g4 (43 kDa, Protein from Homo sapiens)
60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
80s ribosome bound to ebp1, eef2 and serbp1 (Complex from Homo sapiens)
40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
5.8s rrna (50 kDa, RNA from Homo sapiens)
60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
18s rrna (602 kDa, RNA from Homo sapiens)
60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
5s rrna (38 kDa, RNA from Homo sapiens)
60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l10-like (24 kDa, Protein from Homo sapiens)
40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
Elongation factor 2 (95 kDa, Protein from Homo sapiens)
40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)

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