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60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8ohd
Q-score: 0.531
DaRosa PA, Penchev I, Gumbin SC, Scavone F, Wachalska M, Paulo JA, Ordureau A, Peter JJ, Kulathu Y, Harper JW, Becker T, Beckmann R, Kopito RR
Nature (2024) 627 pp. 445-452 [ DOI: doi:10.1038/s41586-024-07073-0 Pubmed: 38383785 ]
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal subunit (Complex from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- E3 ufm1-protein ligase 1 (Complex from Homo sapiens)
- Ubiquitin-fold modifier 1 (9 kDa, Protein from Homo sapiens)
- 60s ribosomal subunit in complex with e3-ufm1 ligase (Complex)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- Cdk5 regulatory subunit-associated protein 3 (56 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- E3 ufm1-protein ligase 1 (89 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- Ribosomal protein ul16-like (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l10a (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- Ddrgk domain-containing protein 1 (35 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8oj0
Q-score: 0.463
DaRosa PA, Penchev I, Gumbin SC, Scavone F, Wachalska M, Paulo JA, Ordureau A, Peter JJ, Kulathu Y, Harper JW, Becker T, Beckmann R, Kopito RR
Nature (2024) 627 pp. 445-452 [ DOI: doi:10.1038/s41586-024-07073-0 Pubmed: 38383785 ]
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens environmental sample)
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal subunit bound to the e3-ufm1 complex and sec61 (Complex)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal subunit (Complex from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- E3 ufm1-protein ligase 1 (Complex from Homo sapiens)
- Ubiquitin-fold modifier 1 (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- Protein transport protein sec61 subunit beta (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- Cdk5 regulatory subunit-associated protein 3 (56 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- E3 ufm1-protein ligase 1 (89 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- Ribosomal protein ul16-like (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l10a (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- Ddrgk domain-containing protein 1 (35 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8oj5
Q-score: 0.57
DaRosa PA, Penchev I, Gumbin SC, Scavone F, Wachalska M, Paulo JA, Ordureau A, Peter JJ, Kulathu Y, Harper JW, Becker T, Beckmann R, Kopito RR
Nature (2024) 627 pp. 445-452 [ DOI: doi:10.1038/s41586-024-07073-0 Pubmed: 38383785 ]
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- E3-ufm1 complex bound to the 60s ribosome (Complex from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- Ubiquitin-fold modifier 1 (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- Cdk5 regulatory subunit-associated protein 3 (56 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- E3 ufm1-protein ligase 1 (89 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- Ribosomal protein ul16-like (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l10a (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- Ddrgk domain-containing protein 1 (35 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8oj8
Q-score: 0.468
DaRosa PA, Penchev I, Gumbin SC, Scavone F, Wachalska M, Paulo JA, Ordureau A, Peter JJ, Kulathu Y, Harper JW, Becker T, Beckmann R, Kopito RR
Nature (2024) 627 pp. 445-452 [ DOI: doi:10.1038/s41586-024-07073-0 Pubmed: 38383785 ]
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- 60s ribosomal subunit (Complex from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal subunit in complex with e3-ufm1 ligase, state 1 (Complex)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- E3 ufm1-protein ligase 1 (Complex from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- Protein transport protein sec61 subunit beta (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- E3 ufm1-protein ligase 1 (89 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- Ribosomal protein ul16-like (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l10a (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
Yeast 80S ribosome in complex with Map1 (conformation 1)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8bqd
Q-score: 0.26
Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R
PLoS Biol (2023) 21 pp. e3001995-e3001995 [ Pubmed: 37079644 DOI: doi:10.1371/journal.pbio.3001995 ]
- Rps20 isoform 1 (11 kDa, Protein from baker's yeast)
- 40s ribosomal protein s25 (9 kDa, Protein from baker's yeast)
- 60s ribosomal protein l40-a (6 kDa, Protein from baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from baker's yeast)
- 40s ribosomal protein s0-a (22 kDa, Protein from baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from baker's yeast)
- Rps5p (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
- Rpl9a isoform 1 (21 kDa, Protein from baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from baker's yeast)
- 40s ribosomal protein s12 (13 kDa, Protein from baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from baker's yeast)
- 40s ribosomal protein s19-a (15 kDa, Protein from baker's yeast)
- 40s ribosomal protein s23-a (15 kDa, Protein from baker's yeast)
- 60s ribosomal protein l1-a (24 kDa, Protein from baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
- Rps22a isoform 1 (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s15 (16 kDa, Protein from baker's yeast)
- Methionine aminopeptidase 1 (43 kDa, Protein from baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l24-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s21-a (9 kDa, Protein from baker's yeast)
- Rps3 isoform 1 (24 kDa, Protein from baker's yeast)
- 60s ribosomal protein l7-a (25 kDa, Protein from baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from baker's yeast)
- Rpl38 isoform 1 (8 kDa, Protein from baker's yeast)
- 60s ribosomal protein l14-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l34-a (12 kDa, Protein from baker's yeast)
- 40s ribosomal protein s1-a (26 kDa, Protein from baker's yeast)
- 40s ribosomal protein s16-a (15 kDa, Protein from baker's yeast)
- 40s ribosomal protein s31 (8 kDa, Protein from baker's yeast)
- 60s ribosomal protein l41 (3 kDa, Protein from baker's yeast)
- 60s ribosomal protein l43-a (9 kDa, Protein from baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from baker's yeast)
- Yeast 80s ribosome in complex with map1 (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l30 (10 kDa, Protein from baker's yeast)
- 40s ribosomal protein s10-a (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l25 (13 kDa, Protein from baker's yeast)
- 40s ribosomal protein s30-a (6 kDa, Protein from baker's yeast)
- Rps2 isoform 1 (23 kDa, Protein from baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
- Rpl5 isoform 1 (33 kDa, Protein from baker's yeast)
- Rps28a isoform 1 (7 kDa, Protein from baker's yeast)
- 40s ribosomal protein s11-a (16 kDa, Protein from baker's yeast)
- 40s ribosomal protein s8-b (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s9-a (21 kDa, Protein from baker's yeast)
- 40s ribosomal protein s17-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l22-a (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l13-a (21 kDa, Protein from baker's yeast)
- Rpl10 isoform 1 (25 kDa, Protein from baker's yeast)
- 60s ribosomal protein l42-a (11 kDa, Protein from baker's yeast)
- 25s rrna (1 MDa, RNA from baker's yeast)
- 60s ribosomal protein l8-a (25 kDa, Protein from baker's yeast)
- 5s rrna (38 kDa, RNA from baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from baker's yeast)
- Rpl4a isoform 1 (39 kDa, Protein from baker's yeast)
- 40s ribosomal protein s6-a (26 kDa, Protein from baker's yeast)
- 18s rrna (579 kDa, RNA from baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from baker's yeast)
- Rpl32 isoform 1 (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from baker's yeast)
- 40s ribosomal protein s18-a (16 kDa, Protein from baker's yeast)
- Rpl11b isoform 1 (19 kDa, Protein from baker's yeast)
- 40s ribosomal protein s14-b (13 kDa, Protein from baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from baker's yeast)
- Rps26b isoform 1 (11 kDa, Protein from baker's yeast)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l2-a (27 kDa, Protein from baker's yeast)
- 5.8s rrna (50 kDa, RNA from baker's yeast)
- 40s ribosomal protein s13 (16 kDa, Protein from baker's yeast)
- Rps29a isoform 1 (6 kDa, Protein from baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
- 60s ribosomal protein l6-b (19 kDa, Protein from baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from baker's yeast)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from baker's yeast)
Yeast 80S ribosome in complex with Map1 (conformation 2)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8bqx
Q-score: 0.264
Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R
PLoS Biol (2023) 21 pp. e3001995-e3001995 [ Pubmed: 37079644 DOI: doi:10.1371/journal.pbio.3001995 ]
- 60s ribosomal protein l40-a (6 kDa, Protein from baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from baker's yeast)
- 40s ribosomal protein s0-a (22 kDa, Protein from baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from baker's yeast)
- 40s ribosomal protein s2 (23 kDa, Protein from baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from baker's yeast)
- 40s ribosomal protein s12 (13 kDa, Protein from baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from baker's yeast)
- 40s ribosomal protein s5 (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s19-a (15 kDa, Protein from baker's yeast)
- 40s ribosomal protein s23-a (15 kDa, Protein from baker's yeast)
- 60s ribosomal protein l1-a (24 kDa, Protein from baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
- 40s ribosomal protein s15 (16 kDa, Protein from baker's yeast)
- Methionine aminopeptidase 1 (43 kDa, Protein from baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l41-a (3 kDa, Protein from baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from baker's yeast)
- 60s ribosomal protein l24-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s21-a (9 kDa, Protein from baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l7-a (25 kDa, Protein from baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from baker's yeast)
- 40s ribosomal protein s25-a (9 kDa, Protein from baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from baker's yeast)
- Rpl38 isoform 1 (8 kDa, Protein from baker's yeast)
- 60s ribosomal protein l14-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from baker's yeast)
- 40s ribosomal protein s26-b (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l34-a (12 kDa, Protein from baker's yeast)
- 40s ribosomal protein s1-a (26 kDa, Protein from baker's yeast)
- 40s ribosomal protein s16-a (15 kDa, Protein from baker's yeast)
- 40s ribosomal protein s31 (8 kDa, Protein from baker's yeast)
- 40s ribosomal protein s29-a (6 kDa, Protein from baker's yeast)
- 60s ribosomal protein l43-a (9 kDa, Protein from baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from baker's yeast)
- Yeast 80s ribosome in complex with map1 (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l30 (10 kDa, Protein from baker's yeast)
- 40s ribosomal protein s10-a (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l25 (13 kDa, Protein from baker's yeast)
- 40s ribosomal protein s30-a (6 kDa, Protein from baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
- 40s ribosomal protein s11-a (16 kDa, Protein from baker's yeast)
- 40s ribosomal protein s9-a (21 kDa, Protein from baker's yeast)
- 40s ribosomal protein s17-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l22-a (11 kDa, Protein from baker's yeast)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l13-a (21 kDa, Protein from baker's yeast)
- Rpl10 isoform 1 (25 kDa, Protein from baker's yeast)
- 60s ribosomal protein l42-a (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l8-a (25 kDa, Protein from baker's yeast)
- 5s rrna (38 kDa, RNA from baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s20 (11 kDa, Protein from baker's yeast)
- 40s ribosomal protein s6-a (26 kDa, Protein from baker's yeast)
- 18s rrna (579 kDa, RNA from baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from baker's yeast)
- Rpl32 isoform 1 (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from baker's yeast)
- 40s ribosomal protein s18-a (16 kDa, Protein from baker's yeast)
- Rpl11b isoform 1 (19 kDa, Protein from baker's yeast)
- 40s ribosomal protein s14-b (13 kDa, Protein from baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from baker's yeast)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l2-a (27 kDa, Protein from baker's yeast)
- 5.8s rrna (50 kDa, RNA from baker's yeast)
- 40s ribosomal protein s28-a (7 kDa, Protein from baker's yeast)
- 40s ribosomal protein s13 (16 kDa, Protein from baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
- 60s ribosomal protein l6-b (19 kDa, Protein from baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from baker's yeast)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from baker's yeast)
- 40s ribosomal protein s3 (24 kDa, Protein from baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from baker's yeast)
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8bip
Q-score: 0.451
Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R
PLoS Biol (2023) 21 pp. e3001995-e3001995 [ Pubmed: 37079644 DOI: doi:10.1371/journal.pbio.3001995 ]
- 60s ribosomal protein l9-a (21 kDa, Protein from baker's yeast)
- 60s ribosomal protein l40-a (6 kDa, Protein from baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from baker's yeast)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l24-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l10 (25 kDa, Protein from baker's yeast)
- N-terminal acetyltransferase b complex catalytic subunit nat3 (22 kDa, Protein from baker's yeast)
- 60s ribosomal protein l7-a (25 kDa, Protein from baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from baker's yeast)
- Nascent peptide chain (1 kDa, Protein from baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from baker's yeast)
- 60s ribosomal protein l2-a (27 kDa, Protein from baker's yeast)
- 60s ribosomal protein l22-a (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from baker's yeast)
- 5.8s rrna (50 kDa, RNA from baker's yeast)
- 60s ribosomal protein l13-a (21 kDa, Protein from baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from baker's yeast)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l42-a (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from baker's yeast)
- 25s rrna (1 MDa, RNA from baker's yeast)
- 60s ribosomal protein l14-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from baker's yeast)
- 60s ribosomal protein l8-a (25 kDa, Protein from baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from baker's yeast)
- 60s ribosomal protein l34-a (12 kDa, Protein from baker's yeast)
- 5s rrna (38 kDa, RNA from baker's yeast)
- 60s ribosomal protein l11-b (19 kDa, Protein from baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from baker's yeast)
- N-terminal acetyltransferase b complex subunit mdm20 (92 kDa, Protein from baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from baker's yeast)
- 60s ribosomal protein l43-a (9 kDa, Protein from baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from baker's yeast)
- 60s ribosomal protein l30 (10 kDa, Protein from baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l6-b (19 kDa, Protein from baker's yeast)
- 60s ribosomal protein l25 (13 kDa, Protein from baker's yeast)
- 60s ribosomal protein l41-a (3 kDa, Protein from baker's yeast)
- Large ribosomal subunit of a yeast 80s ribosome with natb-complex (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l21-a (18 kDa, Protein from baker's yeast)
- 60s ribosomal protein l38 (8 kDa, Protein from baker's yeast)
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8bjq
Q-score: 0.337
Knorr AG, Mackens-Kiani T, Musial J, Berninghausen O, Becker T, Beatrix B, Beckmann R
PLoS Biol (2023) 21 pp. e3001995-e3001995 [ Pubmed: 37079644 DOI: doi:10.1371/journal.pbio.3001995 ]
- 60s ribosomal protein l9-a (21 kDa, Protein from baker's yeast)
- 60s ribosomal protein l40-a (6 kDa, Protein from baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from baker's yeast)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l24-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l10 (25 kDa, Protein from baker's yeast)
- N-terminal acetyltransferase b complex catalytic subunit nat3 (22 kDa, Protein from baker's yeast)
- 60s ribosomal protein l7-a (25 kDa, Protein from baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from baker's yeast)
- 60s ribosomal protein l2-a (27 kDa, Protein from baker's yeast)
- 60s ribosomal protein l22-a (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from baker's yeast)
- 5.8s rrna (50 kDa, RNA from baker's yeast)
- 60s ribosomal protein l13-a (21 kDa, Protein from baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from baker's yeast)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l42-a (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from baker's yeast)
- 25s rrna (1 MDa, RNA from baker's yeast)
- 60s ribosomal protein l14-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from baker's yeast)
- 60s ribosomal protein l8-a (25 kDa, Protein from baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from baker's yeast)
- 60s ribosomal protein l34-a (12 kDa, Protein from baker's yeast)
- 5s rrna (38 kDa, RNA from baker's yeast)
- N-terminal acetyltransferase b complex subunit mdm20 (92 kDa, Protein from baker's yeast)
- 60s ribosomal protein l11-b (19 kDa, Protein from baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from baker's yeast)
- 60s ribosomal protein l43-a (9 kDa, Protein from baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from baker's yeast)
- 60s ribosomal protein l30 (10 kDa, Protein from baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l6-b (19 kDa, Protein from baker's yeast)
- 60s ribosomal protein l25 (13 kDa, Protein from baker's yeast)
- 60s ribosomal protein l41-a (3 kDa, Protein from baker's yeast)
- Large ribosomal subunit of a yeast 80s ribosome with natb-complex (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l21-a (18 kDa, Protein from baker's yeast)
- 60s ribosomal protein l38 (8 kDa, Protein from baker's yeast)
Structure of the translating Neurospora crassa ribosome arrested by cycloheximide
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7r81
Q-score: 0.539
Shen L, Su Z, Yang K, Wu C, Becker T, Bell-Pedersen D, Zhang J, Sachs MS
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2111862118 Pubmed: 34815343 ]
- 40s ribosomal protein s24 (15 kDa, Protein from Neurospora crassa)
- Trna (24 kDa, RNA from Neurospora crassa)
- 60s ribosomal protein l35 (14 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l9 (21 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l27 (el27) (15 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s13 (16 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l11 (20 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l34 (13 kDa, Protein from Neurospora crassa)
- Ribosomal protein l37 (10 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l20 (20 kDa, Protein from Neurospora crassa)
- Nascent peptide (Complex from Neurospora crassa)
- 60s ribosomal protein l44 (11 kDa, Protein from Neurospora crassa)
- Ribosomal protein l14 (15 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s20 (13 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l10 (25 kDa, Protein from Neurospora crassa)
- Probable 40s ribosomal protein s10-b (18 kDa, Protein from Neurospora crassa)
- 5.8s rrna (50 kDa, RNA from Neurospora crassa)
- 60s ribosomal protein (14 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l7 (28 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l4-a (38 kDa, Protein from Neurospora crassa)
- 18s rrna (578 kDa, RNA from Neurospora crassa)
- 40s ribosomal protein s29 (6 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l23 (14 kDa, Protein from Neurospora crassa)
- Ribosomal protein l19 (22 kDa, Protein from Neurospora crassa)
- Spermidine (145 Da, Ligand)
- 40s ribosomal protein s17 (16 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l16 (26 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l32 (15 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s19 (16 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s27 (8 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s28 (7 kDa, Protein from Neurospora crassa)
- Structure of the translating neurospora crassa ribosome arrested by cycloheximide (Complex)
- 40s ribosomal protein s16 (15 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l8 (29 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l39 (6 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s6 (27 kDa, Protein from Neurospora crassa)
- Mrna (Complex from Neurospora crassa)
- 60s ribosomal protein l18 (20 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s23 (15 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s2 (28 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s22 (14 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l28 (16 kDa, Protein from Neurospora crassa)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s0 (31 kDa, Protein from Neurospora crassa)
- 5s rrna (38 kDa, RNA from Neurospora crassa)
- 60s ribosomal protein l15 (24 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s9 (21 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s11 (18 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l38 (9 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l2 (27 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s7 (22 kDa, Protein from Neurospora crassa)
- 40s ribosomal subunit (Complex from Neurospora crassa)
- 40s ribosomal protein s12 (16 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l24 (17 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s14 (us11) (16 kDa, Protein from Neurospora crassa)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- 40s ribosomal protein s26e (13 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l5 (34 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l22 (14 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s5 (23 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s25 (10 kDa, Protein from Neurospora crassa)
- Hypothetical protein ncu16635 (el41) (3 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l29 (7 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l3 (44 kDa, Protein from Neurospora crassa)
- Trna (Complex from Neurospora crassa)
- 60s ribosomal protein l36 (11 kDa, Protein from Neurospora crassa)
- Nascent peptide (358 Da, Protein from Neurospora crassa)
- 60s ribosomal protein l13 (23 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l6 (22 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l33 (12 kDa, Protein from Neurospora crassa)
- Ribosomal protein srp1 (18 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l43 (10 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s8 (23 kDa, Protein from Neurospora crassa)
- Guanine nucleotide-binding protein subunit beta-like protein (35 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s1 (29 kDa, Protein from Neurospora crassa)
- Ribosomal_l28e domain-containing protein (16 kDa, Protein from Neurospora crassa)
- Cytoplasmic ribosomal protein 10 (28 kDa, Protein from Neurospora crassa)
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l25 (17 kDa, Protein from Neurospora crassa)
- Ribosomal protein l26 (15 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s18 (17 kDa, Protein from Neurospora crassa)
- 26s rrna (1 MDa, RNA from Neurospora crassa)
- 40s ribosomal protein s30 (6 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s4 (29 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l17 (20 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l40 (6 kDa, Protein from Neurospora crassa)
- Ribosomal protein s12 (17 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l30 (11 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s21 (9 kDa, Protein from Neurospora crassa)
- Mrna (5 kDa, RNA from Neurospora crassa)
- 60s ribosomal subunit (Complex from Neurospora crassa)
Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7p3k
Q-score: 0.541
Su T, Kudva R, Becker T, Buschauer R, Komar T, Berninghausen O, von Heijne G, Cheng J, Beckmann R
Nucleic Acids Res (2021) 49 pp. 9539-9547 [ DOI: doi:10.1093/nar/gkab665 Pubmed: 34403461 ]
- 70s ribosome (Complex from Escherichia coli K-12)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli (strain K12))
- 5s rrna (38 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli (strain K12))
- 23s rrna (893 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli (strain K12))
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- Trna (24 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli (strain K12))
- 16s rrna (492 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli (strain K12))
- Chloramphenicol (323 Da, Ligand)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
- Mrna (870 Da, RNA from Escherichia coli K-12)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli (strain K12))